FFCP PHASE1:Hg19::chr2:65159616..65159630,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:65159616..65159630,- to FFCP PHASE1:Hg19::chr2:65159616..65159630,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=400958 | |EntrezGene=400958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-35bp_to_NR_036586_5end | |||
|cluster_id=chr2:65159616..65159630,- | |||
|coexpression_cluster_id=C782 | |||
|description=CAGE_peak_4_at_LOC400958_5end | |||
|id=chr2:65159616..65159630,- | |||
|ontology_enrichment_celltype=CL:0000945!5.60e-65!24;CL:0000826!5.60e-65!24;CL:0000542!6.20e-32!53;CL:0000051!6.20e-32!53;CL:0000838!1.77e-28!52;CL:0002087!3.97e-18!119;CL:0000738!1.10e-16!140;CL:0000785!1.45e-15!2;CL:0000955!1.45e-15!2;CL:0000818!1.45e-15!2;CL:0000954!1.45e-15!2;CL:0000816!1.45e-15!2;CL:0002031!3.10e-15!124;CL:0000037!6.84e-13!172;CL:0000566!6.84e-13!172;CL:0000236!6.91e-13!14;CL:0002032!4.58e-12!165;CL:0000837!4.58e-12!165;CL:0000988!5.60e-12!182;CL:0000817!1.11e-10!3;CL:0000946!1.18e-08!1;CL:0000786!1.18e-08!1;CL:0000980!1.18e-08!1;CL:0000819!1.27e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.09e-44;24!CL:0000542;1.21e-11;53!CL:0000236;1.09e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,9.57e-45,24;CL:0000826,9.57e-45,24;CL:0000838,1.08e-20,52;CL:0000542,2.65e-20,53;CL:0000051,2.65e-20,53;CL:0002087,5.66e-12,115;CL:0002031,1.81e-11,120;CL:0000738,4.23e-10,136;CL:0002032,1.70e-08,161;CL:0000837,1.70e-08,161;CL:0000037,3.94e-08,168;CL:0000988,1.06e-07,177;CL:0000236,3.24e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;1.21e-11;53 | |||
|ontology_enrichment_disease=DOID:0060058!9.64e-26!10;DOID:12603!1.10e-08!1;DOID:0060073!1.27e-08!1;DOID:8675!1.27e-08!1;DOID:630!2.29e-08!1;DOID:0050177!2.29e-08!1;DOID:0050427!2.29e-08!1;DOID:4960!3.53e-08!1;DOID:0070004!3.53e-08!1;DOID:2355!4.07e-08!1;DOID:2531!5.82e-08!51;DOID:0060083!5.82e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.91e-20;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.67e-20,10 | |||
|ontology_enrichment_uberon=UBERON:0002106!6.22e-22!3;UBERON:0004854!6.22e-22!3;UBERON:0009034!6.22e-22!3;UBERON:0002095!6.22e-22!3;UBERON:0004782!6.22e-22!3;UBERON:0003281!6.22e-22!3;UBERON:0009664!6.22e-22!3;UBERON:0002296!6.22e-22!3;UBERON:0005602!6.22e-22!3;UBERON:0001179!6.22e-22!3;UBERON:0006293!6.22e-22!3;UBERON:0004177!1.01e-09!7;UBERON:0000945!1.45e-08!8;UBERON:0010039!1.45e-08!8;UBERON:0001736!1.71e-08!1;UBERON:0006298!1.71e-08!1;UBERON:0001154!2.64e-08!1;UBERON:0001153!2.64e-08!1;UBERON:0002372!3.79e-08!1;UBERON:0001961!3.79e-08!1;UBERON:0001744!3.79e-08!1;UBERON:0001735!3.79e-08!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.30e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.30e-08,3;UBERON:0004854,1.30e-08,3;UBERON:0009034,1.30e-08,3;UBERON:0002095,1.30e-08,3;UBERON:0004782,1.30e-08,3;UBERON:0003281,1.30e-08,3;UBERON:0009664,1.30e-08,3;UBERON:0002296,1.30e-08,3;UBERON:0005602,1.30e-08,3;UBERON:0001179,1.30e-08,3;UBERON:0006293,1.30e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36218985290986,2.70931945184821,3.69940672174292,0,0,0,0,0,0,0.619737604642413,1.42169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,1.14950487990897,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,1.0404181360211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.929015875628594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91227394607833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.77557054980777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.921871900446234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281951753939561,0.257831551894309,1.39917618294901,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36218985290986,2.70931945184821,3.69940672174292,0,0,0,0,0,0,0.619737604642413,1.42169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,1.14950487990897,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,1.0404181360211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.929015875628594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91227394607833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.77557054980777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.921871900446234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281951753939561,0.257831551894309,1.39917618294901,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p4@LOC400958 | |||
}} | }} |
Latest revision as of 00:13, 18 September 2015
Short description: | p4@LOC400958 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LOC400958_5end |
Coexpression cluster: | C782_B_Burkitt_lymphoma_splenic_acute_CD19_xeroderma |
Association with transcript: | -35bp_to_NR_036586_5end |
EntrezGene: | LOC400958 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 9.57e-45 | 24 |
pro-B cell | 9.57e-45 | 24 |
lymphoid lineage restricted progenitor cell | 1.08e-20 | 52 |
lymphocyte | 2.65e-20 | 53 |
common lymphoid progenitor | 2.65e-20 | 53 |
nongranular leukocyte | 5.66e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.81e-11 | 120 |
leukocyte | 4.23e-10 | 136 |
hematopoietic oligopotent progenitor cell | 1.70e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.70e-08 | 161 |
hematopoietic stem cell | 3.94e-08 | 168 |
hematopoietic cell | 1.06e-07 | 177 |
B cell | 3.24e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.30e-08 | 3 |
gastrointestinal system mesentery | 1.30e-08 | 3 |
stomach region | 1.30e-08 | 3 |
mesentery | 1.30e-08 | 3 |
gastrointestinal system serosa | 1.30e-08 | 3 |
mesentery of stomach | 1.30e-08 | 3 |
gut mesentery | 1.30e-08 | 3 |
dorsal mesentery | 1.30e-08 | 3 |
dorsal mesogastrium | 1.30e-08 | 3 |
peritoneal cavity | 1.30e-08 | 3 |
spleen primordium | 1.30e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.67e-20 | 10 |