FFCP PHASE1:Hg19::chr2:64751433..64751472,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:64751433..64751472,+ to FFCP PHASE1:Hg19::chr2:64751433..64751472,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54812 | |EntrezGene=54812 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25951 | |HGNC=25951 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ULP2,Q53GW0 | |UniProt=Q6ULP2,Q53GW0 | ||
|association_with_transcript=0bp_to_ENST00000238855,ENST00000238856,ENST00000422803,NM_001002243,NM_017657,NM_203437,uc002scz.2,uc002sda.2,uc002sdb.2_5end | |||
|cluster_id=chr2:64751433..64751472,+ | |||
|description=CAGE_peak_2_at_AFTPH_5end | |||
|id=chr2:64751433..64751472,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.47e-22!76;CL:0000763!4.62e-21!112;CL:0000049!4.62e-21!112;CL:0000839!2.48e-20!70;CL:0000557!8.91e-20!71;CL:0002032!3.26e-18!165;CL:0000837!3.26e-18!165;CL:0000037!5.62e-18!172;CL:0000566!5.62e-18!172;CL:0002009!5.94e-18!65;CL:0002194!6.85e-18!63;CL:0000576!6.85e-18!63;CL:0000040!6.85e-18!63;CL:0000559!6.85e-18!63;CL:0000738!1.98e-17!140;CL:0002057!3.39e-17!42;CL:0000860!3.53e-17!45;CL:0002031!4.21e-16!124;CL:0000988!1.44e-14!182;CL:0002087!7.87e-14!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.79e-15;33!CL:0002057;4.79e-15;33!CL:0000473;6.36e-13;39!CL:0000234;6.36e-13;39!CL:0000576;2.51e-12;48!CL:0000766;2.20e-10;69!CL:0000763;7.54e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.10e-22,72;CL:0000763,3.74e-21,108;CL:0000049,3.74e-21,108;CL:0000839,9.40e-21,66;CL:0000557,3.70e-20,67;CL:0002009,1.48e-18,61;CL:0002194,1.66e-18,59;CL:0000576,1.66e-18,59;CL:0000040,1.66e-18,59;CL:0000559,1.66e-18,59;CL:0000473,5.38e-18,48;CL:0000234,5.38e-18,48;CL:0000860,6.57e-18,42;CL:0002057,6.57e-18,42;CL:0002032,8.53e-18,161;CL:0000837,8.53e-18,161;CL:0000037,1.32e-17,168;CL:0000738,3.42e-17,136;CL:0002031,7.47e-16,120;CL:0000988,9.23e-15,177;CL:0002087,1.24e-13,115 | |||
|ontology_enrichment_development_v019=CL:0002057;2.93e-13;42!CL:0000049;4.87e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.87e-40!115;UBERON:0002390!3.01e-18!102;UBERON:0003061!3.01e-18!102;UBERON:0001049!3.00e-17!57;UBERON:0005068!3.00e-17!57;UBERON:0006241!3.00e-17!57;UBERON:0007135!3.00e-17!57;UBERON:0002193!1.55e-16!112;UBERON:0003080!2.81e-16!42;UBERON:0002780!4.03e-16!41;UBERON:0001890!4.03e-16!41;UBERON:0006240!4.03e-16!41;UBERON:0002371!2.03e-15!80;UBERON:0002616!1.49e-14!59;UBERON:0001474!3.75e-13!86;UBERON:0002020!4.67e-13!34;UBERON:0003528!4.67e-13!34;UBERON:0001893!5.03e-13!34;UBERON:0001869!1.78e-12!32;UBERON:0002791!1.99e-12!33;UBERON:0002619!6.43e-12!22;UBERON:0004765!2.19e-11!101;UBERON:0001434!2.19e-11!101;UBERON:0000955!3.90e-11!69;UBERON:0006238!3.90e-11!69;UBERON:0001950!5.40e-11!20;UBERON:0003075!3.99e-09!86;UBERON:0007284!3.99e-09!86;UBERON:0000956!4.48e-09!25;UBERON:0000203!4.48e-09!25;UBERON:0002405!8.82e-09!115;UBERON:0002346!2.58e-08!90;UBERON:0001017!3.52e-08!82;UBERON:0003056!1.71e-07!61;UBERON:0005743!2.08e-07!86;UBERON:0000153!5.53e-07!129;UBERON:0007811!5.53e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.49e-12;22!UBERON:0002780;3.62e-12;41!UBERON:0001890;3.62e-12;41!UBERON:0001869;1.67e-11;32!UBERON:0007023;1.99e-11;114!UBERON:0001893;2.07e-11;34!UBERON:0003528;2.16e-11;34!UBERON:0002020;2.16e-11;34!UBERON:0001950;2.31e-11;20!UBERON:0002791;2.92e-11;32!UBERON:0000073;2.00e-10;53!UBERON:0002616;2.00e-10;53!UBERON:0000956;2.99e-09;25!UBERON:0000203;2.99e-09;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.66e-41,114;UBERON:0002390,1.42e-18,98;UBERON:0003061,1.42e-18,98;UBERON:0001049,4.26e-18,56;UBERON:0005068,4.26e-18,56;UBERON:0006241,4.26e-18,56;UBERON:0007135,4.26e-18,56;UBERON:0000073,5.26e-18,53;UBERON:0002616,5.26e-18,53;UBERON:0002780,1.12e-16,41;UBERON:0001890,1.12e-16,41;UBERON:0003080,1.12e-16,41;UBERON:0006240,1.12e-16,41;UBERON:0002193,4.01e-16,108;UBERON:0002371,6.17e-16,76;UBERON:0003528,1.78e-13,34;UBERON:0002020,1.78e-13,34;UBERON:0001893,1.93e-13,34;UBERON:0002405,2.20e-13,93;UBERON:0001474,3.21e-13,82;UBERON:0001869,7.21e-13,32;UBERON:0002791,1.53e-12,32;UBERON:0002619,2.17e-12,22;UBERON:0000955,1.65e-11,68;UBERON:0006238,1.65e-11,68;UBERON:0001950,2.01e-11,20;UBERON:0004765,6.92e-11,90;UBERON:0001434,9.42e-10,100;UBERON:0003075,1.50e-09,82;UBERON:0007284,1.50e-09,82;UBERON:0000956,2.56e-09,25;UBERON:0000203,2.56e-09,25;UBERON:0002346,8.27e-09,86;UBERON:0001017,1.49e-08,81;UBERON:0003056,5.20e-08,61;UBERON:0001016,1.87e-07,89 | |||
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| ||
|short_description=p2@AFTPH | |||
}} | }} |
Latest revision as of 23:43, 17 September 2015
Short description: | p2@AFTPH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_AFTPH_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000238855, ENST00000238856, ENST00000422803, NM_001002243, NM_017657, NM_203437, uc002scz.2, uc002sda.2, uc002sdb.2_5end |
EntrezGene: | AFTPH |
HGNC: | 25951 |
UniProt: | Q6ULP2Q53GW0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.10e-22 | 72 |
myeloid cell | 3.74e-21 | 108 |
common myeloid progenitor | 3.74e-21 | 108 |
myeloid lineage restricted progenitor cell | 9.40e-21 | 66 |
granulocyte monocyte progenitor cell | 3.70e-20 | 67 |
macrophage dendritic cell progenitor | 1.48e-18 | 61 |
monopoietic cell | 1.66e-18 | 59 |
monocyte | 1.66e-18 | 59 |
monoblast | 1.66e-18 | 59 |
promonocyte | 1.66e-18 | 59 |
defensive cell | 5.38e-18 | 48 |
phagocyte | 5.38e-18 | 48 |
classical monocyte | 6.57e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.57e-18 | 42 |
hematopoietic oligopotent progenitor cell | 8.53e-18 | 161 |
hematopoietic multipotent progenitor cell | 8.53e-18 | 161 |
hematopoietic stem cell | 1.32e-17 | 168 |
leukocyte | 3.42e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 7.47e-16 | 120 |
hematopoietic cell | 9.23e-15 | 177 |
nongranular leukocyte | 1.24e-13 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.66e-41 | 114 |
hematopoietic system | 1.42e-18 | 98 |
blood island | 1.42e-18 | 98 |
neural tube | 4.26e-18 | 56 |
neural rod | 4.26e-18 | 56 |
future spinal cord | 4.26e-18 | 56 |
neural keel | 4.26e-18 | 56 |
regional part of nervous system | 5.26e-18 | 53 |
regional part of brain | 5.26e-18 | 53 |
regional part of forebrain | 1.12e-16 | 41 |
forebrain | 1.12e-16 | 41 |
anterior neural tube | 1.12e-16 | 41 |
future forebrain | 1.12e-16 | 41 |
hemolymphoid system | 4.01e-16 | 108 |
bone marrow | 6.17e-16 | 76 |
brain grey matter | 1.78e-13 | 34 |
gray matter | 1.78e-13 | 34 |
telencephalon | 1.93e-13 | 34 |
immune system | 2.20e-13 | 93 |
bone element | 3.21e-13 | 82 |
cerebral hemisphere | 7.21e-13 | 32 |
regional part of telencephalon | 1.53e-12 | 32 |
regional part of cerebral cortex | 2.17e-12 | 22 |
brain | 1.65e-11 | 68 |
future brain | 1.65e-11 | 68 |
neocortex | 2.01e-11 | 20 |
skeletal element | 6.92e-11 | 90 |
skeletal system | 9.42e-10 | 100 |
neural plate | 1.50e-09 | 82 |
presumptive neural plate | 1.50e-09 | 82 |
cerebral cortex | 2.56e-09 | 25 |
pallium | 2.56e-09 | 25 |
neurectoderm | 8.27e-09 | 86 |
central nervous system | 1.49e-08 | 81 |
pre-chordal neural plate | 5.20e-08 | 61 |
nervous system | 1.87e-07 | 89 |