FFCP PHASE1:Hg19::chr2:174828836..174828885,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:174828836..174828885,- to FFCP PHASE1:Hg19::chr2:174828836..174828885,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6670 | |EntrezGene=6670 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11208 | |HGNC=11208 | ||
|TSSclassifier=strong | |||
|UniProt=Q02447,Q59FX5 | |UniProt=Q02447,Q59FX5 | ||
|association_with_transcript=61bp_to_ENST00000418194,NM_001017371,uc002uie.2_5end | |||
|cluster_id=chr2:174828836..174828885,- | |||
|description=CAGE_peak_5_at_SP3_5end | |||
|id=chr2:174828836..174828885,- | |||
|ontology_enrichment_celltype=CL:0000766!3.44e-19!76;CL:0002057!1.36e-17!42;CL:0000738!2.28e-17!140;CL:0000839!1.90e-16!70;CL:0000557!1.42e-15!71;CL:0000037!1.98e-15!172;CL:0000566!1.98e-15!172;CL:0002031!7.90e-15!124;CL:0000860!1.25e-14!45;CL:0002087!1.75e-14!119;CL:0002194!3.80e-14!63;CL:0000576!3.80e-14!63;CL:0000040!3.80e-14!63;CL:0000559!3.80e-14!63;CL:0002032!2.09e-13!165;CL:0000837!2.09e-13!165;CL:0002009!2.74e-13!65;CL:0000988!1.22e-12!182;CL:0000763!1.26e-12!112;CL:0000049!1.26e-12!112;CL:0002320!7.75e-10!365;CL:0000219!1.09e-09!390;CL:0000134!1.28e-09!358 | |||
|ontology_enrichment_celltype_v019=CL:0000576;7.77e-12;48!CL:0000860;4.68e-11;33!CL:0002057;4.68e-11;33!CL:0000766;5.50e-10;69!CL:0000473;2.30e-08;39!CL:0000234;2.30e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.03e-22,72;CL:0000738,6.05e-19,136;CL:0000839,6.08e-19,66;CL:0000557,6.01e-18,67;CL:0000860,1.26e-17,42;CL:0002057,1.26e-17,42;CL:0000037,9.75e-17,168;CL:0002194,1.47e-16,59;CL:0000576,1.47e-16,59;CL:0000040,1.47e-16,59;CL:0000559,1.47e-16,59;CL:0002031,2.08e-16,120;CL:0002087,4.44e-16,115;CL:0002009,1.53e-15,61;CL:0000473,3.09e-15,48;CL:0000234,3.09e-15,48;CL:0002032,1.26e-14,161;CL:0000837,1.26e-14,161;CL:0000988,2.80e-14,177;CL:0000763,4.16e-14,108;CL:0000049,4.16e-14,108;CL:0002320,5.72e-11,361;CL:0000219,8.38e-11,386;CL:0000134,9.93e-11,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.88e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.07e-16!102;UBERON:0003061!2.07e-16!102;UBERON:0004765!1.62e-15!101;UBERON:0001434!1.62e-15!101;UBERON:0001474!5.70e-15!86;UBERON:0002371!1.33e-14!80;UBERON:0002193!4.12e-14!112;UBERON:0002384!3.28e-10!375;UBERON:0002405!2.89e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.31e-18,98;UBERON:0003061,2.31e-18,98;UBERON:0001434,4.79e-18,100;UBERON:0001474,5.92e-17,82;UBERON:0002371,1.19e-16,76;UBERON:0004765,1.63e-16,90;UBERON:0002193,1.26e-15,108;UBERON:0002405,1.13e-13,93;UBERON:0002384,2.33e-11,371;UBERON:0002204,5.61e-07,167 | |||
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| ||
|short_description=p5@SP3 | |||
}} | }} |
Latest revision as of 06:37, 18 September 2015
Short description: | p5@SP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 61bp_to_ENST00000418194, NM_001017371, uc002uie.2_5end |
EntrezGene: | SP3 |
HGNC: | 11208 |
UniProt: | Q02447Q59FX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.03e-22 | 72 |
leukocyte | 6.05e-19 | 136 |
myeloid lineage restricted progenitor cell | 6.08e-19 | 66 |
granulocyte monocyte progenitor cell | 6.01e-18 | 67 |
classical monocyte | 1.26e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.26e-17 | 42 |
hematopoietic stem cell | 9.75e-17 | 168 |
monopoietic cell | 1.47e-16 | 59 |
monocyte | 1.47e-16 | 59 |
monoblast | 1.47e-16 | 59 |
promonocyte | 1.47e-16 | 59 |
hematopoietic lineage restricted progenitor cell | 2.08e-16 | 120 |
nongranular leukocyte | 4.44e-16 | 115 |
macrophage dendritic cell progenitor | 1.53e-15 | 61 |
defensive cell | 3.09e-15 | 48 |
phagocyte | 3.09e-15 | 48 |
hematopoietic oligopotent progenitor cell | 1.26e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.26e-14 | 161 |
hematopoietic cell | 2.80e-14 | 177 |
myeloid cell | 4.16e-14 | 108 |
common myeloid progenitor | 4.16e-14 | 108 |
connective tissue cell | 5.72e-11 | 361 |
motile cell | 8.38e-11 | 386 |
mesenchymal cell | 9.93e-11 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.31e-18 | 98 |
blood island | 2.31e-18 | 98 |
skeletal system | 4.79e-18 | 100 |
bone element | 5.92e-17 | 82 |
bone marrow | 1.19e-16 | 76 |
skeletal element | 1.63e-16 | 90 |
hemolymphoid system | 1.26e-15 | 108 |
immune system | 1.13e-13 | 93 |
connective tissue | 2.33e-11 | 371 |
musculoskeletal system | 5.61e-07 | 167 |