FFCP PHASE1:Hg19::chr22:50970919..50970965,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:50970919..50970965,- to FFCP PHASE1:Hg19::chr22:50970919..50970965,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=440836 | |EntrezGene=440836 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34388 | |HGNC=34388 | ||
|TSSclassifier=strong | |||
|UniProt=A8MYP8,A1L1A8 | |UniProt=A8MYP8,A1L1A8 | ||
|association_with_transcript=42bp_to_ENST00000329363,NM_001014440,uc003bmh.2_5end | |||
|cluster_id=chr22:50970919..50970965,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_2_at_ODF3B_5end | |||
|id=chr22:50970919..50970965,- | |||
|ontology_enrichment_celltype=CL:0000766!7.11e-29!76;CL:0002057!7.68e-29!42;CL:0000557!3.90e-25!71;CL:0000738!6.05e-25!140;CL:0000860!6.58e-25!45;CL:0002009!4.09e-24!65;CL:0002194!1.29e-23!63;CL:0000576!1.29e-23!63;CL:0000040!1.29e-23!63;CL:0000559!1.29e-23!63;CL:0000839!5.87e-23!70;CL:0002087!6.52e-18!119;CL:0002031!2.01e-17!124;CL:0000763!2.31e-16!112;CL:0000049!2.31e-16!112;CL:0000037!1.67e-15!172;CL:0000566!1.67e-15!172;CL:0000988!3.96e-15!182;CL:0002032!4.68e-14!165;CL:0000837!4.68e-14!165;CL:0002393!3.60e-07!9;CL:0002397!3.60e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.78e-27;33!CL:0002057;9.78e-27;33!CL:0000473;5.01e-23;39!CL:0000234;5.01e-23;39!CL:0000576;9.51e-23;48!CL:0000766;1.55e-18;69!CL:0002087;2.18e-08;104!CL:0000763;4.90e-08;100!CL:0000094;1.66e-07;8!CL:0000738;1.94e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.37e-39,72;CL:0000473,6.55e-37,48;CL:0000234,6.55e-37,48;CL:0000860,8.41e-37,42;CL:0002057,8.41e-37,42;CL:0002009,3.17e-34,61;CL:0000557,6.81e-34,67;CL:0002194,1.30e-33,59;CL:0000576,1.30e-33,59;CL:0000040,1.30e-33,59;CL:0000559,1.30e-33,59;CL:0000738,3.45e-31,136;CL:0000839,7.21e-31,66;CL:0000763,1.52e-25,108;CL:0000049,1.52e-25,108;CL:0002087,7.29e-23,115;CL:0000037,3.57e-22,168;CL:0000988,9.18e-22,177;CL:0002031,1.84e-21,120;CL:0002032,4.93e-20,161;CL:0000837,4.93e-20,161;CL:0002393,8.36e-09,9;CL:0002397,8.36e-09,9;CL:0000094,1.48e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-26;42!CL:0000049;3.55e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.40e-30!102;UBERON:0003061!5.40e-30!102;UBERON:0002193!7.42e-28!112;UBERON:0007023!6.71e-26!115;UBERON:0002371!5.18e-21!80;UBERON:0002405!1.16e-17!115;UBERON:0001474!2.12e-17!86;UBERON:0004765!1.21e-13!101;UBERON:0001434!1.21e-13!101;UBERON:0003081!1.98e-12!216;UBERON:0000178!1.02e-09!15;UBERON:0000179!1.02e-09!15;UBERON:0000463!1.02e-09!15;UBERON:0001049!3.06e-07!57;UBERON:0005068!3.06e-07!57;UBERON:0006241!3.06e-07!57;UBERON:0007135!3.06e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.13e-12;15!UBERON:0000179;4.13e-12;15!UBERON:0000463;4.13e-12;15!UBERON:0002390;1.15e-08;32!UBERON:0007023;6.13e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.07e-40,98;UBERON:0003061,1.07e-40,98;UBERON:0002193,4.64e-39,108;UBERON:0002371,4.59e-29,76;UBERON:0002405,1.37e-28,93;UBERON:0007023,2.52e-25,114;UBERON:0001474,4.73e-25,82;UBERON:0004765,1.28e-20,90;UBERON:0003081,7.50e-17,203;UBERON:0001434,8.03e-17,100;UBERON:0000178,4.39e-12,15;UBERON:0000179,4.39e-12,15;UBERON:0000463,4.39e-12,15;UBERON:0001049,8.09e-07,56;UBERON:0005068,8.09e-07,56;UBERON:0006241,8.09e-07,56;UBERON:0007135,8.09e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.09340350391728,0.218441372130172,0.263766978228454,0,0,0,0,0,0.487932798790507,0,0,0.313454721478088,0,0,0,15.741161584078,10.590976039043,10.311112352092,20.454942396143,2.68680578668049,14.5527155917111,0,0,0.369754010166788,0,0.142169232487422,1.76160263600908,21.0518255242113,26.2713226185886,32.3346197366619,2.23915474239924,1.94336199611388,0.515151135268373,28.7888512783538,19.6495490718181,28.1397510977867,23.9401908012855,16.0355476328512,18.8920886246013,39.7015501404568,30.483124076963,25.06711636819,23.0979606093534,15.4916324060118,33.8566216485854,20.3301726706013,19.1034305040492,18.8767726933871,28.7718858828648,16.3673803808808,23.6554736545645,43.2105203244598,42.4857590734076,55.8354423197829,37.1467825444588,26.6671055604836,26.1585344578141,38.4410457842817,38.5897359630949,32.7955155504726,25.4267791106015,20.2552699793161,24.0511414455072,24.7168684984972,27.8511632954207,23.2721096514297,24.3753129587894,32.5883857466069,15.4296563229197,15.1056754182862,18.6981676567145,20.6410493754036,1.75996244461323,1.09227722252426,0,2.13365111283254,0.800791974072025,0.574752439954483,2.64417949113945,0,1.70763890732835,1.76171156811282,2.6759125968766,1.32171328579026,5.04457706683382,4.47752944117631,0,0,0.616804496998528,0,0,0,0,0.334231370655521,0,0,0.270803863765016,0.768547918354051,0.780356085359269,0.328875809207352,0.276350017785848,0,0,0,0,0,0,0,0.253019692019503,0.318565414324097,0.651083453856419,0,0.602300476311091,0.383959833463255,1.24930726552346,1.89421801635213,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.144846518960824,0.795285947051099,2.91980922181582,0.189069634328136,0,0.175669571386252,7.53129684111848,1.09288586487763,0.741568885568859,0.649094787309367,0.522389211897802,1.19662164466979,1.19245312152671,5.71994910780128,1.48583000531826,0,0,0,0,0,0.275118041940067,0,0,0,0,2.01414658554573,1.52054421143703,2.68468263302986,0,0,0.17859945656816,0,0.112611480483322,0,0,0,26.3560834872127,31.022421131866,0,0,0.12663051166458,0.264818361626438,0.573673241497627,0,0,1.06748995729705,0.74000264525148,0,0.404132016209064,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,4.75201142912821,0.494533858557114,0,0,0,0,0,0,0,1.50238058906597,0.340296549480063,0.538168907066586,0,0,0,0.206105058476878,1.03056216018252,0.18611685633159,0,0,1.00973509697646,0.276149695926898,0.484938170456436,0.355009592516614,0,0,0,0.272746120590835,0.286804595389004,0.121973706129595,0.132529768321485,1.16193942869518,1.55491582523056,0.504641701751257,0.36497735907583,3.12899064659632,1.28648187638577,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0,0,0,0,1.4763109092493,0,0,0,2.53510069643662,13.7595810334868,2.95394953340702,0,0.368965315629341,0,0.109750285408626,0,0.100528972411631,0.277765335475589,0.977424915930974,0,0,0,0,1.73239737313289,3.70388410061289,1.14152491340759,0.790204397959275,0,7.38651018262192,1.63802985597466,6.8370334652815,0.93733833986777,0.335964256397719,0.283550194484773,0,0,0,0.492663237895943,0.880484340132261,2.28060927094849,1.44119953416961,3.02981840223312,0,0,0,0,0,0,0,0,0,0,0.129271715757778,3.57656445851882,0,0,0,0,0,0,0.57191197463259,1.62786481617433,0,0,1.06617584622764,3.95975936466715,0,0,0.099972991182057,1.2162378064119,2.51128545716063,0,0,0,0,0,0,0,0.336255431980582,0.788123040807709,0,0.77005821767849,0,0,0,0.335032530668698,0,32.956309053676,14.9580729602012,35.225318642063,0,0.500170521059677,0.271265023699736,0.415941723061614,0.535286966391485,0.473107245101804,0,0.601892199455438,0,0,0,0,0,0.391602314925481,0,13.2331536718648,11.6485668442053,14.1947651878581,0,0,3.0239029332968,0.248107807818777,0,0,0.128139149255701,0,0,1.48418066444991,0.154209693802656,0,0.164254312027618,0.519254429183621,0,0.120859449591622,0.200506470303285,0.276242966807689,0.114814448164607,0,0,0.902399225814824,0.15403067420883,1.56869953835371,0,0.527758144464379,0,0.170093705276516,0,3.08454505380579,0,0.501689773854853,0.254876273045038,0.831076008928724,1.11937377361089,0.219259876645935,0,0,0,0,1.64865618636356,0,0,0,0,0,0.290012154876366,0,0.460511024178389,0.275673144969061,0.429680979473094,0.435050081742686,0.255679882248303,0.178064071293475,0,0.576570202095319,0.893288987462089,0.6069466851333,0,0.31481234683064,0,0.924100740528266,0,0,0.18532421910392,0.286249773483982,0,0.316379424718726,0.190630193923825,0,0,0.318203247925937,2.35484592059769,0,0.274537029736055,0,0,0,0,0,5.60541026151954,1.05650146756755,0,0.282810863907425,2.26016233240486,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0,0.92947049429925,0,0.143411352204052,0.0982490410131212,0,0,0.633322905892992,0.987884678879706,0,0.349934720244983,0,0,1.08890984861323,0.941438007767792,0,1.68471475667626,1.33029046061003,0.689170200620878,15.7308758861972,18.351292971417,16.5197684280507,9.05280746739598,8.22724546172388,18.8057260245888,22.1412889267627,12.6900028207083,0,0,0,0.185803175125719,0,0,0,0,0.191505370132367,0,0,0.280797178113459,0,0,0,0,0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| ||
|short_description=p2@ODF3B | |||
}} | }} |
Latest revision as of 21:12, 15 September 2015
Short description: | p2@ODF3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ODF3B_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 42bp_to_ENST00000329363, NM_001014440, uc003bmh.2_5end |
EntrezGene: | ODF3B |
HGNC: | 34388 |
UniProt: | A8MYP8A1L1A8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.37e-39 | 72 |
defensive cell | 6.55e-37 | 48 |
phagocyte | 6.55e-37 | 48 |
classical monocyte | 8.41e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.41e-37 | 42 |
macrophage dendritic cell progenitor | 3.17e-34 | 61 |
granulocyte monocyte progenitor cell | 6.81e-34 | 67 |
monopoietic cell | 1.30e-33 | 59 |
monocyte | 1.30e-33 | 59 |
monoblast | 1.30e-33 | 59 |
promonocyte | 1.30e-33 | 59 |
leukocyte | 3.45e-31 | 136 |
myeloid lineage restricted progenitor cell | 7.21e-31 | 66 |
myeloid cell | 1.52e-25 | 108 |
common myeloid progenitor | 1.52e-25 | 108 |
nongranular leukocyte | 7.29e-23 | 115 |
hematopoietic stem cell | 3.57e-22 | 168 |
hematopoietic cell | 9.18e-22 | 177 |
hematopoietic lineage restricted progenitor cell | 1.84e-21 | 120 |
hematopoietic oligopotent progenitor cell | 4.93e-20 | 161 |
hematopoietic multipotent progenitor cell | 4.93e-20 | 161 |
intermediate monocyte | 8.36e-09 | 9 |
CD14-positive, CD16-positive monocyte | 8.36e-09 | 9 |
granulocyte | 1.48e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.07e-40 | 98 |
blood island | 1.07e-40 | 98 |
hemolymphoid system | 4.64e-39 | 108 |
bone marrow | 4.59e-29 | 76 |
immune system | 1.37e-28 | 93 |
adult organism | 2.52e-25 | 114 |
bone element | 4.73e-25 | 82 |
skeletal element | 1.28e-20 | 90 |
lateral plate mesoderm | 7.50e-17 | 203 |
skeletal system | 8.03e-17 | 100 |
blood | 4.39e-12 | 15 |
haemolymphatic fluid | 4.39e-12 | 15 |
organism substance | 4.39e-12 | 15 |
neural tube | 8.09e-07 | 56 |
neural rod | 8.09e-07 | 56 |
future spinal cord | 8.09e-07 | 56 |
neural keel | 8.09e-07 | 56 |