FFCP PHASE1:Hg19::chr20:5107635..5107705,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:5107635..5107705,+ to FFCP PHASE1:Hg19::chr20:5107635..5107705,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8760 | |EntrezGene=8760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1801 | |HGNC=1801 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000468817,ENST00000486875_5end | |||
|cluster_id=chr20:5107635..5107705,+ | |||
|description=CAGE_peak_1_at_CDS2_5end | |||
|id=chr20:5107635..5107705,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.12e-27!140;CL:0002087!4.48e-21!119;CL:0002031!8.69e-21!124;CL:0000766!9.87e-20!76;CL:0000037!1.49e-17!172;CL:0000566!1.49e-17!172;CL:0000988!3.62e-17!182;CL:0000557!2.84e-16!71;CL:0002057!1.16e-15!42;CL:0002032!1.35e-15!165;CL:0000837!1.35e-15!165;CL:0002009!4.23e-15!65;CL:0002194!7.27e-15!63;CL:0000576!7.27e-15!63;CL:0000040!7.27e-15!63;CL:0000559!7.27e-15!63;CL:0000839!9.52e-15!70;CL:0000860!1.19e-12!45;CL:0000763!8.46e-10!112;CL:0000049!8.46e-10!112;CL:0000791!6.85e-07!18;CL:0000789!6.85e-07!18;CL:0002420!6.85e-07!18;CL:0002419!6.85e-07!18;CL:0000790!6.85e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.42e-12;39!CL:0000234;2.42e-12;39!CL:0000860;1.33e-11;33!CL:0002057;1.33e-11;33!CL:0000576;3.03e-10;48!CL:0000766;1.86e-09;69!CL:0000738;3.75e-07;136!CL:0000791;6.13e-07;18!CL:0000789;6.13e-07;18!CL:0002419;6.13e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.56e-30,136;CL:0002087,1.58e-23,115;CL:0002031,3.72e-23,120;CL:0000766,6.77e-23,72;CL:0000037,2.67e-19,168;CL:0000557,3.52e-19,67;CL:0000988,8.56e-19,177;CL:0000473,1.05e-18,48;CL:0000234,1.05e-18,48;CL:0002009,4.92e-18,61;CL:0002194,7.86e-18,59;CL:0000576,7.86e-18,59;CL:0000040,7.86e-18,59;CL:0000559,7.86e-18,59;CL:0000839,1.72e-17,66;CL:0002032,2.96e-17,161;CL:0000837,2.96e-17,161;CL:0000860,1.16e-15,42;CL:0002057,1.16e-15,42;CL:0000763,2.43e-11,108;CL:0000049,2.43e-11,108;CL:0000791,6.85e-07,18;CL:0000789,6.85e-07,18;CL:0002420,6.85e-07,18;CL:0002419,6.85e-07,18;CL:0000790,6.85e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;1.05e-11;42!CL:0000790;6.13e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.18e-29!115;UBERON:0002390!1.93e-20!102;UBERON:0003061!1.93e-20!102;UBERON:0002193!5.55e-19!112;UBERON:0002371!7.65e-14!80;UBERON:0002405!3.06e-13!115;UBERON:0001049!8.98e-12!57;UBERON:0005068!8.98e-12!57;UBERON:0006241!8.98e-12!57;UBERON:0007135!8.98e-12!57;UBERON:0001474!9.02e-12!86;UBERON:0002616!2.21e-10!59;UBERON:0000955!2.64e-10!69;UBERON:0006238!2.64e-10!69;UBERON:0003080!9.39e-10!42;UBERON:0002780!1.58e-09!41;UBERON:0001890!1.58e-09!41;UBERON:0006240!1.58e-09!41;UBERON:0004765!2.78e-09!101;UBERON:0001434!2.78e-09!101;UBERON:0005743!2.28e-08!86;UBERON:0001017!3.17e-08!82;UBERON:0000178!3.91e-08!15;UBERON:0000179!3.91e-08!15;UBERON:0000463!3.91e-08!15;UBERON:0001893!9.14e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.77e-08;15!UBERON:0000179;3.77e-08;15!UBERON:0000463;3.77e-08;15!UBERON:0007023;3.99e-08;114!UBERON:0002780;4.12e-07;41!UBERON:0001890;4.12e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.17e-29,114;UBERON:0002390,4.26e-23,98;UBERON:0003061,4.26e-23,98;UBERON:0002193,2.31e-21,108;UBERON:0002371,3.04e-16,76;UBERON:0002405,3.22e-15,93;UBERON:0001474,7.97e-14,82;UBERON:0004765,1.05e-12,90;UBERON:0001049,1.53e-11,56;UBERON:0005068,1.53e-11,56;UBERON:0006241,1.53e-11,56;UBERON:0007135,1.53e-11,56;UBERON:0000073,1.00e-10,53;UBERON:0002616,1.00e-10,53;UBERON:0001434,3.57e-10,100;UBERON:0000955,4.38e-10,68;UBERON:0006238,4.38e-10,68;UBERON:0002780,1.58e-09,41;UBERON:0001890,1.58e-09,41;UBERON:0003080,1.58e-09,41;UBERON:0006240,1.58e-09,41;UBERON:0000178,3.91e-08,15;UBERON:0000179,3.91e-08,15;UBERON:0000463,3.91e-08,15;UBERON:0001017,5.01e-08,81;UBERON:0003075,4.46e-07,82;UBERON:0007284,4.46e-07,82;UBERON:0001893,9.14e-07,34 | |||
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| ||
|short_description=p1@CDS2 | |||
}} | }} |
Latest revision as of 00:43, 17 September 2015
Short description: | p1@CDS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDS2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000468817, ENST00000486875_5end |
EntrezGene: | CDS2 |
HGNC: | 1801 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.56e-30 | 136 |
nongranular leukocyte | 1.58e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 3.72e-23 | 120 |
myeloid leukocyte | 6.77e-23 | 72 |
hematopoietic stem cell | 2.67e-19 | 168 |
granulocyte monocyte progenitor cell | 3.52e-19 | 67 |
hematopoietic cell | 8.56e-19 | 177 |
defensive cell | 1.05e-18 | 48 |
phagocyte | 1.05e-18 | 48 |
macrophage dendritic cell progenitor | 4.92e-18 | 61 |
monopoietic cell | 7.86e-18 | 59 |
monocyte | 7.86e-18 | 59 |
monoblast | 7.86e-18 | 59 |
promonocyte | 7.86e-18 | 59 |
myeloid lineage restricted progenitor cell | 1.72e-17 | 66 |
hematopoietic oligopotent progenitor cell | 2.96e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.96e-17 | 161 |
classical monocyte | 1.16e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-15 | 42 |
myeloid cell | 2.43e-11 | 108 |
common myeloid progenitor | 2.43e-11 | 108 |
mature alpha-beta T cell | 6.85e-07 | 18 |
alpha-beta T cell | 6.85e-07 | 18 |
immature T cell | 6.85e-07 | 18 |
mature T cell | 6.85e-07 | 18 |
immature alpha-beta T cell | 6.85e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.17e-29 | 114 |
hematopoietic system | 4.26e-23 | 98 |
blood island | 4.26e-23 | 98 |
hemolymphoid system | 2.31e-21 | 108 |
bone marrow | 3.04e-16 | 76 |
immune system | 3.22e-15 | 93 |
bone element | 7.97e-14 | 82 |
skeletal element | 1.05e-12 | 90 |
neural tube | 1.53e-11 | 56 |
neural rod | 1.53e-11 | 56 |
future spinal cord | 1.53e-11 | 56 |
neural keel | 1.53e-11 | 56 |
regional part of nervous system | 1.00e-10 | 53 |
regional part of brain | 1.00e-10 | 53 |
skeletal system | 3.57e-10 | 100 |
brain | 4.38e-10 | 68 |
future brain | 4.38e-10 | 68 |
regional part of forebrain | 1.58e-09 | 41 |
forebrain | 1.58e-09 | 41 |
anterior neural tube | 1.58e-09 | 41 |
future forebrain | 1.58e-09 | 41 |
blood | 3.91e-08 | 15 |
haemolymphatic fluid | 3.91e-08 | 15 |
organism substance | 3.91e-08 | 15 |
central nervous system | 5.01e-08 | 81 |
neural plate | 4.46e-07 | 82 |
presumptive neural plate | 4.46e-07 | 82 |
telencephalon | 9.14e-07 | 34 |