FFCP PHASE1:Hg19::chr1:955674..955686,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:955674..955686,+ to FFCP PHASE1:Hg19::chr1:955674..955686,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=375790 | |EntrezGene=375790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=329 | |HGNC=329 | ||
|TSSclassifier=strong | |||
|UniProt=O00468 | |UniProt=O00468 | ||
|association_with_transcript=64bp_to_AF016903,U84406_5end | |||
|cluster_id=chr1:955674..955686,+ | |||
|description=CAGE_peak_4_at_AGRN_5end | |||
|id=chr1:955674..955686,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.24e-33!254;CL:0002076!9.44e-12!43;CL:0002321!1.65e-10!248;CL:0000220!3.55e-10!246;CL:0000076!2.32e-09!62;CL:0000223!6.93e-09!59;CL:1000497!2.42e-08!18;CL:0002518!2.42e-08!18;CL:1000449!2.30e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.80e-12;42!CL:1000497;1.65e-10;17!CL:0002518;1.65e-10;17!CL:0002368;3.22e-10;13!CL:1000449;2.03e-09;15!CL:0000077;9.63e-09;19!CL:0002202;4.40e-08;9!CL:0002632;4.40e-08;9!CL:0000244;7.10e-08;4!CL:0000731;7.10e-08;4!CL:1000507;1.45e-07;10!CL:1000494;1.45e-07;10!CL:0000575;9.74e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.35e-22,253;CL:0002076,2.33e-16,42;CL:0002321,5.23e-12,250;CL:0000223,1.10e-10,58;CL:1000497,1.30e-10,17;CL:0002518,1.30e-10,17;CL:0002368,2.43e-10,13;CL:1000449,1.52e-09,15;CL:0000077,7.36e-09,19;CL:0000076,3.60e-08,63;CL:0002202,3.93e-08,9;CL:0002632,3.93e-08,9;CL:0000244,6.79e-08,4;CL:0000731,6.79e-08,4;CL:1000507,1.02e-07,10;CL:1000494,1.02e-07,10;CL:0000213,5.13e-07,58;CL:0000215,5.13e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000223;4.44e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.88e-13!106;DOID:0050687!3.01e-10!143;DOID:162!7.97e-08!235;DOID:14566!8.65e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006554!7.60e-13!44;UBERON:0001008!3.30e-12!45;UBERON:0000058!3.87e-09!26;UBERON:0004119!4.46e-09!169;UBERON:0000925!4.46e-09!169;UBERON:0006595!4.46e-09!169;UBERON:0002113!5.15e-09!27;UBERON:0003918!5.15e-09!27;UBERON:0005095!5.15e-09!27;UBERON:0007687!5.15e-09!27;UBERON:0000489!8.56e-09!32;UBERON:0005911!3.49e-08!82;UBERON:0005177!4.26e-08!107;UBERON:0005172!6.91e-08!55;UBERON:0005173!6.91e-08!55;UBERON:0000080!1.21e-07!18;UBERON:0002120!1.21e-07!18;UBERON:0004875!1.21e-07!18;UBERON:0005721!1.21e-07!18;UBERON:0005754!1.21e-07!18;UBERON:0007297!1.21e-07!18;UBERON:0009569!1.35e-07!113;UBERON:0000466!1.47e-07!126;UBERON:0004211!2.30e-07!16;UBERON:0001285!2.30e-07!16;UBERON:0007684!2.30e-07!16;UBERON:0003220!2.30e-07!16;UBERON:0004208!2.30e-07!16;UBERON:0003064!2.44e-07!37;UBERON:0006555!2.57e-07!17;UBERON:0005103!2.57e-07!17;UBERON:0000083!2.57e-07!17;UBERON:0009201!2.57e-07!17;UBERON:0004819!2.57e-07!17;UBERON:0006553!2.57e-07!17;UBERON:0003074!2.57e-07!17;UBERON:0003060!2.57e-07!17;UBERON:0000477!2.60e-07!286;UBERON:0001007!4.75e-07!155;UBERON:0001555!4.75e-07!155;UBERON:0007026!4.75e-07!155;UBERON:0000464!6.77e-07!104;UBERON:0003887!9.08e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.29e-10;30!UBERON:0001008;2.29e-10;30!UBERON:0006555;2.03e-09;15!UBERON:0004819;2.03e-09;15!UBERON:0001285;2.03e-09;15!UBERON:0007684;2.03e-09;15!UBERON:0004211;1.45e-07;10!UBERON:0009773;1.45e-07;10!UBERON:0001231;1.45e-07;10!UBERON:0004810;1.45e-07;10!UBERON:0002113;5.04e-07;24!UBERON:0011143;5.04e-07;24!UBERON:0005911;9.14e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,1.14e-09,47;UBERON:0004211,1.52e-09,15;UBERON:0009773,1.52e-09,15;UBERON:0001231,1.52e-09,15;UBERON:0001285,1.52e-09,15;UBERON:0007684,1.52e-09,15;UBERON:0004208,1.52e-09,15;UBERON:0001008,2.13e-09,48;UBERON:0006555,7.09e-09,16;UBERON:0004819,7.09e-09,16;UBERON:0004810,1.02e-07,10 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0.527533956456907,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,0,1.02000345622126,1.56727360739044,0.286235987131057,1.36874425072884,0.753255837568817,0,0.246301768349837,0.0787107813136792,0,0,0,0,1.204823675113,1.47901604066715,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.434539556882471,0,0.486634870302636,0.378139268656271,0.886917589850256,0.966182642624386,0.0654895377488563,1.09288586487763,1.48313777113772,0,0.348259474598534,0.398873881556595,0,0,0,0,0,0.694281003215189,0,1.67799774483962,1.37559020970034,0.208994966536811,0.258416759169329,0.35576626268671,0,0,0,1.22031028774085,0.367663080345869,2.43042584364528,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0.872188104285069,0.496971951695318,0.12663051166458,0.132409180813219,0,0.354668382198357,1.12135520028461,0,2.22000793575444,0,0.404132016209064,0,0.151357427644931,0.576175924479999,0,0,0,0.298897361103602,0,0,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0.247266929278557,0,2.15585442544872,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0.300091096084402,0.103052529238439,0.772921620136887,0,0,0.194874010322397,1.00973509697646,0.368199594569197,0,0.355009592516614,0,0,0.773043412653187,1.09098448236334,0.286804595389004,0.365921118388786,0.265059536642971,0,0.414644220061482,1.26160425437814,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0.723033089650446,0.772057809126758,0.217879444092406,0.237270619111097,0.269662616320329,0.784885860501384,1.15424147083917,0,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0,0.658501712451753,0,0.402115889646523,0.925884451585296,0,0,0,0.463721619900307,0,0.288732895522148,0.462985512576611,0.570762456703795,0,1.71697232418975,0,0,0.148631162288728,0,1.51183915378974,0,0,0.581267877027924,1.53353071666084,0,0.088048434013226,0.207328115540772,0,0,0,0,0,1.71072446022705,0.205654985406647,0.901029173531752,0.285826432630578,0,0,0,0,0,0,0.797814349754612,0,0,0,0.266422179016099,0.57191197463259,0,0,0,0.355391948742546,0,0.301439377059586,0,1.99945982364114,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0.215627574859517,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.356857977594324,0.630809660135739,0.234282829985426,0,0,0,0,0,0.0868836144680828,0.391602314925481,0.686286847621712,0,0,0,0,0,1.20956117331872,0,0.153461973288062,0.280660094433074,0,0,0.160853921143607,0,0.616838775210622,0,0.164254312027618,0,0.116210378459959,0.241718899183244,3.00759705454927,1.19705285616665,0.114814448164607,0.182091168006717,0.131124414959424,1.35359883872224,0.693138033939733,1.56869953835371,2.92278449306521,0.844413031143006,2.27466768141793,0.170093705276516,0.863663664408557,4.62681758070868,0.541892875087706,2.50844886927427,0,0.831076008928724,2.46262230194396,0,0,0.256450125116389,0.656029291399411,0,0,0.824125183365091,0.247528499761764,0,1.30012049207304,0,0,0.154048617114644,0,0.137836572484531,0,0,0.340906509664404,0.356128142586949,0.661139661443912,1.72971060628596,0.765676274967505,1.2138933702666,0,0,0,0.308033580176089,0,0,0,0,0,0,0.38126038784765,0,0.42793898803392,0,0,0.179872457583315,0,0.353437207037059,0,0,0,0,1.46228093778771,0,0.136499911407986,0.989838023675989,1.13008116620243,0,0,0.438450885253763,0,0.655894752046633,0,0.6196469961995,0,0,0.0982490410131212,0,0,0.422215270595328,0,0,0,0.192444225451024,1.34060455107157,3.26672954583968,0.0941438007767792,0.43050537267123,10.1082885400575,4.43430153536676,1.37834040124176,0,0,0,0,0,0,0,0,0.640944426764839,0,0.980160863924127,0,0,0,0,0,0,0,0,0.280797178113459,0,0.156679895773023,0,0.338583555603207,0,0,0,0,0.307240764308458,0,0,0.19538809540204,0,0,0.270455678475983,0,0,0.18714054040822,0.293016358543788,0,0,0.284136146806413,0.71623345421307,0.593929361665277,0.307160702099232,0,0.422008249231538,0.333926115068718,0,0.422250816255987,0.19924798825107,0,0,0.306806047506464,0,0,0.359473404589307,0.358042349351218,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.260427761085233,0.0874599999961957,0,0.910347586283997,1.5255219017566,0.709163045303809,0,0.291604613383254,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.455768223388005,0.23056390438806,0.269272933229316,0.54323685961004,0.31900115973192,0.183195186803725,0.533034776018635,0,0,0,0.225595660617181,0,0.335643173951685,0.189753732724185,0,1.47698645169619,0.326465616318295,0.282706142867882,0,0.995261931078505,0,0,0,0,0.104421949505455,0.134802265961354,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0.330991955875499,0,0,0.853828638089378,0.277349346026277,1.21491816834592,0.391969589657511,0.261177619741208,0.17472666824203,0,0.193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| ||
|short_description=p4@AGRN | |||
}} | }} |
Latest revision as of 23:46, 19 September 2015
Short description: | p4@AGRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_AGRN_5end |
Coexpression cluster: | NA |
Association with transcript: | 64bp_to_AF016903, U84406_5end |
EntrezGene: | AGRN |
HGNC: | 329 |
UniProt: | O00468 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.35e-22 | 253 |
endo-epithelial cell | 2.33e-16 | 42 |
embryonic cell | 5.23e-12 | 250 |
endodermal cell | 1.10e-10 | 58 |
kidney cell | 1.30e-10 | 17 |
kidney epithelial cell | 1.30e-10 | 17 |
respiratory epithelial cell | 2.43e-10 | 13 |
epithelial cell of nephron | 1.52e-09 | 15 |
mesothelial cell | 7.36e-09 | 19 |
squamous epithelial cell | 3.60e-08 | 63 |
epithelial cell of tracheobronchial tree | 3.93e-08 | 9 |
epithelial cell of lower respiratory tract | 3.93e-08 | 9 |
transitional epithelial cell | 6.79e-08 | 4 |
urothelial cell | 6.79e-08 | 4 |
kidney tubule cell | 1.02e-07 | 10 |
nephron tubule epithelial cell | 1.02e-07 | 10 |
lining cell | 5.13e-07 | 58 |
barrier cell | 5.13e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 1.14e-09 | 47 |
nephron epithelium | 1.52e-09 | 15 |
renal tubule | 1.52e-09 | 15 |
nephron tubule | 1.52e-09 | 15 |
nephron | 1.52e-09 | 15 |
uriniferous tubule | 1.52e-09 | 15 |
nephrogenic mesenchyme | 1.52e-09 | 15 |
renal system | 2.13e-09 | 48 |
excretory tube | 7.09e-09 | 16 |
kidney epithelium | 7.09e-09 | 16 |
nephron tubule epithelium | 1.02e-07 | 10 |