FFCP PHASE1:Hg19::chr1:65394459..65394461,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:65394459..65394461,- to FFCP PHASE1:Hg19::chr1:65394459..65394461,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:65394459..65394461,- | |||
|coexpression_cluster_id=C416 | |||
|description=CAGE_peak_at_chr1:65394459..65394461,- | |||
|id=chr1:65394459..65394461,- | |||
|ontology_enrichment_celltype=CL:0000738!6.66e-26!140;CL:0002087!4.15e-23!119;CL:0002031!5.92e-21!124;CL:0000037!1.17e-19!172;CL:0000566!1.17e-19!172;CL:0000988!4.83e-18!182;CL:0002057!1.78e-17!42;CL:0002032!3.72e-17!165;CL:0000837!3.72e-17!165;CL:0000860!9.25e-16!45;CL:0000766!9.94e-15!76;CL:0002009!2.48e-13!65;CL:0002194!1.32e-12!63;CL:0000576!1.32e-12!63;CL:0000040!1.32e-12!63;CL:0000559!1.32e-12!63;CL:0000557!5.08e-12!71;CL:0000839!4.02e-11!70;CL:0000838!1.55e-09!52;CL:0000542!2.79e-09!53;CL:0000051!2.79e-09!53;CL:0000763!9.93e-09!112;CL:0000049!9.93e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.55e-18;33!CL:0002057;3.55e-18;33!CL:0000576;5.71e-14;48!CL:0000473;6.16e-12;39!CL:0000234;6.16e-12;39!CL:0002087;8.53e-10;104!CL:0000766;9.11e-10;69!CL:0000094;1.91e-07;8!CL:0000624;1.91e-07;6!CL:0000738;3.25e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.17e-32,136;CL:0002087,2.08e-27,115;CL:0002031,1.35e-23,120;CL:0000860,1.27e-22,42;CL:0002057,1.27e-22,42;CL:0000037,1.80e-22,168;CL:0000988,1.27e-20,177;CL:0000766,4.68e-20,72;CL:0000473,2.36e-19,48;CL:0000234,2.36e-19,48;CL:0002032,2.90e-19,161;CL:0000837,2.90e-19,161;CL:0002009,1.35e-18,61;CL:0002194,2.11e-17,59;CL:0000576,2.11e-17,59;CL:0000040,2.11e-17,59;CL:0000559,2.11e-17,59;CL:0000557,1.01e-15,67;CL:0000839,3.32e-14,66;CL:0000763,3.79e-11,108;CL:0000049,3.79e-11,108;CL:0000838,9.79e-09,52;CL:0000542,2.04e-08,53;CL:0000051,2.04e-08,53;CL:0000094,1.72e-07,8;CL:0000624,2.73e-07,6;CL:0000236,3.34e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;5.78e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.87e-16!112;UBERON:0002390!4.80e-15!102;UBERON:0003061!4.80e-15!102;UBERON:0007023!3.07e-11!115;UBERON:0002405!3.39e-11!115;UBERON:0002371!9.32e-10!80;UBERON:0001474!1.06e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.41e-07;15!UBERON:0000179;4.41e-07;15!UBERON:0000463;4.41e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.30e-20,108;UBERON:0002390,1.82e-19,98;UBERON:0003061,1.82e-19,98;UBERON:0002405,2.09e-14,93;UBERON:0002371,2.94e-13,76;UBERON:0001474,2.36e-11,82;UBERON:0004765,2.89e-09,90;UBERON:0007023,3.00e-07,114;UBERON:0001434,3.26e-07,100;UBERON:0000178,4.02e-07,15;UBERON:0000179,4.02e-07,15;UBERON:0000463,4.02e-07,15 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,1.34465029290355,0.602694528023977,0,0,0.123121058076788,0,0,0,0.410623275218653,0.251085279189606,0.0764134057479513,0.410502947249729,0.314843125254717,3.93364276848904,4.22212337906934,3.56077083626975,0,0,0,1.08454080812422,0.284338464974843,0.587200878669695,13.2958898047651,26.872955960999,8.24641308720237,1.79132379391939,2.59114932815184,1.28787783817093,1.45398238779565,1.51150377475524,1.94067248950253,1.85943229524548,7.40102198439286,2.47765096716083,1.43846196161075,2.81776777182011,3.07426898855161,4.82643953031266,5.80936215225443,1.35426486594342,0.941211697713023,2.45615535052061,1.57306439111559,2.44867113896722,6.09765151444578,3.83602275479425,0.329851300186716,2.19410023383795,0.852449501065388,1.7412554317715,3.97169657283798,3.73693349397345,3.26623264833766,5.21482918420201,1.3031330682307,1.21079900526674,5.15588690382591,3.79754864929061,0.211255286311942,1.27562579979026,0.628975936525128,1.34794357375794,1.80212271409808,0.64290234678832,1.14005097496499,0.59675003159727,2.19196984517561,0,2.73069305631066,1.77901850772711,2.13365111283254,0.400395987036012,1.14950487990897,1.98313461835459,1.90810750907073,23.9069447025968,20.5533016279829,15.6732023531344,0,3.92355994087075,0.526768169550154,5.31116379307349,19.6505381374582,12.3360899399706,0.501559486172034,3.58514493296949,2.8406868344084,7.79306913631645,1.11410456885174,5.00830042707223,3.54454231333794,5.95768500283034,2.43373507478783,2.34106825607781,4.27538551969558,1.93445012450094,1.15921234294021,2.96573126324121,4.28065324943541,4.18142095219907,1.0197840842781,1.14966148080576,2.06176467289578,2.27717722817553,0.637130828648193,0.651083453856419,0,0.602300476311091,0.511946444617674,0,0.947109008176067,0.821127996921047,8.46748321543876,19.523134292196,11.0066546950927,4.87613732627923,0,0,0,0,0.289693037921647,0,0.486634870302636,0.850813354476611,0.665188192387692,0.702678285545008,0.916853528483988,0,0.370784442784429,0.324547393654683,0.522389211897802,0.531831842075461,4.76981248610684,1.14398982156026,1.85728750664782,0.198762407366705,0,0,0.56530794192401,0.838998872419812,0,0,0.775250277507987,3.5576626268671,2.00832367658802,0.402829317109147,0,0.24406205754817,1.10298924103761,0.81014194788176,1.3394959242612,1.12264686313085,0.225222960966644,0,0,0.366403487860815,3.9534125230819,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0.573673241497627,0,0,0,0,0,0.538842688278752,0.326923806226917,0,0,0,0,0,0,0.352303495931295,0.323745888736263,1.68540968042698,0.61246251376468,0,0.413303124703062,0,0.247266929278557,0.910161361938026,0,0.336672227908132,0.250237039743928,0,0,0,0.150238058906597,0,0.717558542755448,0.213557388818567,0.211931901159562,1.20036438433761,0.206105058476878,1.54584324027377,0.18611685633159,0.675105328965065,0.389748020644795,1.26216887122057,0.184099797284599,0.161646056818812,0.710019185033229,0.403008392910561,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0.269662616320329,0.392442930250692,0,0,0,0,0,5.07020139287323,0,2.36315962672562,1.7658523976586,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0.761016608938393,0,0,0.492434012174795,0,0.594524649154913,0,0,0,0,0.581267877027924,0,0,0.44024217006613,0.621984346622316,0.720599767084807,0.12624243342638,0.126995788584338,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0.07333828582095,0.129271715757778,0,0,0,1.04007436911366,0,0,0,0.142977993658148,0,0,0.325736184293735,0.710783897485092,0,0,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0,0.410952645100767,0.358121926479791,0.672510863961164,8.6693534488848,19.190854162497,12.0642454102963,0.508189248444927,1.30139853857622,0,0,0.637938751653163,13.4821264310493,38.8909896965232,3.72973962092432,0,0,0,0.623912584592421,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.347534457872331,0.195801157462741,0,5.78950473144085,15.9628508605776,9.07184241329277,0,0,0.30239029332968,0,0.306923946576125,0.280660094433074,0.512556597022804,0,0,0,0,0,0.0821271560138091,0.519254429183621,0,0.241718899183244,0.40101294060657,0.368323955743585,0.229628896329213,0.364182336013434,0.262248829918848,0,0,0,0,0,0,0.510281115829547,0.647747748306418,0,0,0.501689773854853,0,0,0.223874754722178,0.219259876645935,0,0,0.328014645699706,0,0.824328093181778,0.0915694648183434,0.82509499920588,0,0,1.6068392984416,0.096670718292122,1.07834031980251,2.45605879561807,2.06754858726796,0.966782203814463,0,0.767039646744908,0.178064071293475,0,0.384380134730212,0.255225424989168,0,0,0.62962469366128,0,0,0,0,0,0.286249773483982,0.372158369359667,0.949138274156178,0,0,0,0,0,0.899362287916574,0.54907405947211,0.235624804691373,0,0,0,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0.6196469961995,0.281695602532241,0,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,1.0355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| ||
|short_description=p@chr1:65394459..65394461,- | |||
}} | }} |
Latest revision as of 09:46, 28 July 2015
Short description: | p@chr1:65394459..65394461, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:65394459..65394461, - |
Coexpression cluster: | C416_CD4_Neutrophils_CD8_Natural_CD19_CD14_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.17e-32 | 136 |
nongranular leukocyte | 2.08e-27 | 115 |
hematopoietic lineage restricted progenitor cell | 1.35e-23 | 120 |
classical monocyte | 1.27e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.27e-22 | 42 |
hematopoietic stem cell | 1.80e-22 | 168 |
hematopoietic cell | 1.27e-20 | 177 |
myeloid leukocyte | 4.68e-20 | 72 |
defensive cell | 2.36e-19 | 48 |
phagocyte | 2.36e-19 | 48 |
hematopoietic oligopotent progenitor cell | 2.90e-19 | 161 |
hematopoietic multipotent progenitor cell | 2.90e-19 | 161 |
macrophage dendritic cell progenitor | 1.35e-18 | 61 |
monopoietic cell | 2.11e-17 | 59 |
monocyte | 2.11e-17 | 59 |
monoblast | 2.11e-17 | 59 |
promonocyte | 2.11e-17 | 59 |
granulocyte monocyte progenitor cell | 1.01e-15 | 67 |
myeloid lineage restricted progenitor cell | 3.32e-14 | 66 |
myeloid cell | 3.79e-11 | 108 |
common myeloid progenitor | 3.79e-11 | 108 |
lymphoid lineage restricted progenitor cell | 9.79e-09 | 52 |
lymphocyte | 2.04e-08 | 53 |
common lymphoid progenitor | 2.04e-08 | 53 |
granulocyte | 1.72e-07 | 8 |
CD4-positive, alpha-beta T cell | 2.73e-07 | 6 |
B cell | 3.34e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 9.30e-20 | 108 |
hematopoietic system | 1.82e-19 | 98 |
blood island | 1.82e-19 | 98 |
immune system | 2.09e-14 | 93 |
bone marrow | 2.94e-13 | 76 |
bone element | 2.36e-11 | 82 |
skeletal element | 2.89e-09 | 90 |
adult organism | 3.00e-07 | 114 |
skeletal system | 3.26e-07 | 100 |
blood | 4.02e-07 | 15 |
haemolymphatic fluid | 4.02e-07 | 15 |
organism substance | 4.02e-07 | 15 |