FFCP PHASE1:Hg19::chr1:64059117..64059128,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:64059117..64059128,+ to FFCP PHASE1:Hg19::chr1:64059117..64059128,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5236 | |EntrezGene=5236 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8905 | |HGNC=8905 | ||
|TSSclassifier=strong | |||
|UniProt=P36871 | |UniProt=P36871 | ||
|association_with_transcript=170bp_to_ENST00000371084,NM_002633,uc001dbh.2_5end | |||
|cluster_id=chr1:64059117..64059128,+ | |||
|coexpression_cluster_id=C3992 | |||
|description=CAGE_peak_4_at_PGM1_5end | |||
|id=chr1:64059117..64059128,+ | |||
|ontology_enrichment_celltype=CL:0000136!5.43e-10!15;CL:0000055!9.63e-10!180;CL:0000325!3.51e-08!39;CL:0000680!4.34e-07!57;CL:0000056!4.34e-07!57;CL:0000355!4.34e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.32e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,3.22e-12,15;CL:0000680,2.39e-07,58;CL:0000056,2.39e-07,58;CL:0000355,2.39e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.08e-12!365;UBERON:0000483!7.21e-10!309;UBERON:0000481!1.74e-09!347;UBERON:0000119!2.02e-09!312;UBERON:0002385!6.46e-09!63;UBERON:0001015!6.46e-09!63;UBERON:0000383!6.46e-09!63;UBERON:0001134!6.87e-09!61;UBERON:0002036!6.87e-09!61;UBERON:0003082!6.87e-09!61;UBERON:0005256!2.49e-07!143;UBERON:0000468!2.87e-07!659;UBERON:0000486!6.67e-07!82;UBERON:0004290!6.87e-07!70;UBERON:0000490!7.33e-07!138 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.83e-09,62;UBERON:0002036,1.83e-09,62;UBERON:0003082,1.83e-09,62;UBERON:0002385,3.08e-09,64;UBERON:0001015,3.08e-09,64;UBERON:0000383,3.08e-09,64;UBERON:0005256,4.91e-08,122;UBERON:0007524,2.00e-07,73;UBERON:0003077,2.94e-07,72;UBERON:0007285,2.94e-07,72;UBERON:0000483,3.03e-07,306;UBERON:0002329,5.83e-07,71;UBERON:0003059,5.83e-07,71;UBERON:0007282,5.83e-07,71;UBERON:0004290,5.83e-07,71;UBERON:0009618,5.83e-07,71;UBERON:0003104,7.34e-07,160;UBERON:0009142,7.34e-07,160;UBERON:0000119,7.41e-07,309 | |||
|phase1_expression=7.81217030863394,4.92431204949261,11.6992155399656,10.007329835313,8.49226079411847,11.3404008133048,12.6649939084155,4.42203911398782,5.48489819219661,1.47440361900905,0.697801167972428,2.40285509343189,3.69273769519835,1.36142988256051,0.662794751455832,0,0.602694528023977,0.730310090387373,1.46379839637152,0.984968464614303,0.612002073732759,0.313454721478088,0,1.09499540058307,0.87879847716362,0.61130724598361,0.57470412614962,0.157421562627358,0,0,0.309632246632152,0.919421224478927,1.8072355126695,0,0.852139206383318,0.710846162437108,0.880801318004542,0.553995408531877,0,0.434021741431704,0.223915474239924,0,0.257575567634187,0.290796477559129,0,0,0.232429036905685,0,0.619412741790207,0.863077176966451,0,0,0,0,0,0,0.272906150057846,0.449446968890169,0,0.962787081228281,0,0,0.199463657621632,0,0,0.56738522469114,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0.425208599930087,0.419317291016752,0.22465726229299,0.300353785683013,0.48217676009124,0.285012743741249,0.19891667719909,0.182664153764634,1.75996244461323,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0.263384084775077,0.393419540227666,0.393010762749165,0,0,0.32592226663359,0,0,0,0.589211814949674,0,0,0.128091319725675,0,0.328875809207352,0,0.289803085735052,0,0.535081656179426,0,0.226618685395132,0,0.34362744548263,0,0,0.651083453856419,0,0,0,0,0.236777252044017,0,0.201606743224732,0.534880391567015,0.289648807765598,2.43806866313962,0,13.5534315554142,2.1686349143074,3.00802746381534,4.63508860674636,3.1811437882044,2.43317435151318,0.378139268656271,0.665188192387692,0.527008714158756,1.30979075497713,0,0.370784442784429,0,0,0,0.238490624305342,0,0,0.79504962946682,0,0,0.56530794192401,0.838998872419812,0.275118041940067,0.417989933073621,1.03366703667732,0.35576626268671,0.33472061276467,0,0,1.46437234528902,0.367663080345869,0,0.17859945656816,0.22452937262617,0,0,0.949265659568129,0.366403487860815,1.31780417436063,3.87780264148325,0.872188104285069,3.97577561356255,2.91250176828533,2.78059279707759,1.72101972449288,0.709336764396714,5.04609840128076,1.06748995729705,1.2333377420858,1.8672662123986,0.269421344139376,0.326923806226917,0.908144565869588,1.15235184896,0,1.24864030732128,0,0.448346041655403,0.822041490506354,0.809364721840658,0.561803226808994,0.408308342509787,0.122834317311768,0.309977343527296,0,1.97813543422845,0,2.87447256726495,0.505008341862199,0.500474079487857,0.831192346452549,0,0.612975591598039,0.45071417671979,1.92834711372036,0.717558542755448,1.2813443329114,1.48352330811693,0,0.515262646192195,2.06112432036503,0.744467425326359,1.35021065793013,1.65642908774038,2.27190396819703,1.93304787148829,1.13152239773168,0.355009592516614,0.705264687593482,0.847802961552438,2.12586938479627,0.818238361772504,1.72082757233402,3.78118489001746,2.78312513475119,5.92589108634544,3.62813692553797,5.2987378683882,0.72995471815166,0,0.643240938192885,0,2.78620756819187,1.44375896333917,1.18306800039844,1.51726221070292,0.964044119533928,1.10293972732394,0.871517776369625,1.18635309555548,2.02246962240247,0.98110732562673,1.92373578473195,0,1.40241773803446,4.9388881359768,1.47008711385542,8.87285243752816,1.96565443335525,4.13552934676983,0.441463099414651,0.491953754172454,2.23038153388083,1.42675371031213,1.1240175325762,0.703702806881416,0.555530670951178,0.651616610620649,2.07986957055916,1.44331342025273,0.927443239800615,3.17003474436719,0.433099343283221,0.462985512576611,0,0.790204397959275,0,0.492434012174795,0,0.445893486866185,1.87467667973554,1.34385702559088,0.567100388969546,0.716468181622786,1.45316969256981,1.53353071666084,0,0.880484340132261,1.03664057770386,0.288239906833923,0.75745460055828,0.825472625798197,0.381988425558278,1.17217447210047,1.71072446022705,0.514137463516618,1.50171528921959,1.14330573052231,0.112131084345361,0.43596006883328,0.2933531432838,1.42198887333556,7.15312891703765,0,0,1.04007436911366,1.02882949704857,0,0,5.7191197463259,1.08524321078289,2.46972101034231,2.28015329005615,9.24019066730619,0,3.01439377059586,2.61460037580088,1.29964888536674,0,0.502257091432126,2.10833939483032,0.958499421966331,1.14861935834114,0,2.17171960001369,1.2328579353023,2.14873155887875,0.224170287987055,0.394061520403854,0.646882724578552,0.128343036279748,2.03275699377971,2.60279707715243,0.773288812777695,0.335032530668698,0,0.749007023947182,0,2.07207756718018,1.47229790062968,1.50051156317903,0.271265023699736,1.24782516918484,0.535286966391485,3.94256037584837,2.34282829985426,6.3198680942821,0,1.03473071292505,0.664225598535437,2.76553752812555,0.781952530212746,1.56640925970192,1.37257369524342,0.206768026122887,0.215714200818617,0.426910231213777,2.12189300012382,0,1.81434175997808,8.43566546583841,9.97502826372406,8.41980283299221,12.8139149255701,7.67560873600055,8.20354997832398,8.90508398669946,1.07946785661859,1.77561725313127,0.98552587216571,1.03850885836724,0.464841513839837,0.120859449591622,5.01266175758212,0.184161977871793,3.32961899677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| ||
|short_description=p4@PGM1 | |||
}} | }} |
Latest revision as of 20:59, 18 September 2015
Short description: | p4@PGM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PGM1_5end |
Coexpression cluster: | C3992_skeletal_Preadipocyte_mature_Adipocyte_Cardiac_heart_Hepatocyte |
Association with transcript: | 170bp_to_ENST00000371084, NM_002633, uc001dbh.2_5end |
EntrezGene: | PGM1 |
HGNC: | 8905 |
UniProt: | P36871 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 3.22e-12 | 15 |
muscle precursor cell | 2.39e-07 | 58 |
myoblast | 2.39e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.39e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.83e-09 | 62 |
striated muscle tissue | 1.83e-09 | 62 |
myotome | 1.83e-09 | 62 |
muscle tissue | 3.08e-09 | 64 |
musculature | 3.08e-09 | 64 |
musculature of body | 3.08e-09 | 64 |
trunk mesenchyme | 4.91e-08 | 122 |
dense mesenchyme tissue | 2.00e-07 | 73 |
paraxial mesoderm | 2.94e-07 | 72 |
presumptive paraxial mesoderm | 2.94e-07 | 72 |
epithelium | 3.03e-07 | 306 |
somite | 5.83e-07 | 71 |
presomitic mesoderm | 5.83e-07 | 71 |
presumptive segmental plate | 5.83e-07 | 71 |
dermomyotome | 5.83e-07 | 71 |
trunk paraxial mesoderm | 5.83e-07 | 71 |
mesenchyme | 7.34e-07 | 160 |
entire embryonic mesenchyme | 7.34e-07 | 160 |
cell layer | 7.41e-07 | 309 |