FFCP PHASE1:Hg19::chr1:45477889..45477900,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:45477889..45477900,+ to FFCP PHASE1:Hg19::chr1:45477889..45477900,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7389 | |EntrezGene=7389 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12591 | |HGNC=12591 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENST00000491300_5end | |||
|cluster_id=chr1:45477889..45477900,+ | |||
|description=CAGE_peak_2_at_UROD_5end | |||
|id=chr1:45477889..45477900,+ | |||
|ontology_enrichment_celltype=CL:0002371!2.46e-17!591;CL:0000055!3.27e-15!180;CL:0000183!2.73e-14!59;CL:0000222!4.96e-14!119;CL:0000680!9.14e-14!57;CL:0000056!9.14e-14!57;CL:0000355!9.14e-14!57;CL:0000144!1.36e-13!625;CL:0000187!8.45e-13!54;CL:0000192!9.30e-11!42;CL:0000514!9.30e-11!42;CL:0000393!1.27e-10!60;CL:0000211!1.27e-10!60;CL:0000723!1.74e-09!436;CL:0000048!5.08e-09!430;CL:0000057!1.09e-08!75;CL:0000034!1.48e-08!444;CL:0000003!4.81e-08!722;CL:0000359!9.87e-08!32;CL:0000012!3.02e-07!682;CL:0000548!5.62e-07!679;CL:0000004!5.62e-07!679;CL:0000255!5.62e-07!679;CL:0000220!9.32e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000192;8.49e-08;43!CL:0000187;3.83e-07;55!CL:0000359;8.53e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.48e-14,121;CL:0000680,3.93e-14,58;CL:0000056,3.93e-14,58;CL:0000355,3.93e-14,58;CL:0000187,3.70e-13,55;CL:0000192,4.17e-11,43;CL:0000514,4.17e-11,43;CL:0000393,5.92e-11,61;CL:0000211,5.92e-11,61;CL:0000723,5.42e-10,433;CL:0000048,1.63e-09,427;CL:0000034,4.90e-09,441;CL:0000057,2.21e-08,76;CL:0000359,9.32e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000355;8.44e-08;58!CL:0000514;8.49e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.84e-15!83;UBERON:0002329!1.84e-15!83;UBERON:0003077!1.84e-15!83;UBERON:0003059!1.84e-15!83;UBERON:0007282!1.84e-15!83;UBERON:0009618!1.84e-15!83;UBERON:0007285!1.84e-15!83;UBERON:0004290!7.11e-13!70;UBERON:0000486!1.25e-12!82;UBERON:0002049!2.29e-12!79;UBERON:0007798!2.29e-12!79;UBERON:0001134!2.67e-12!61;UBERON:0002036!2.67e-12!61;UBERON:0003082!2.67e-12!61;UBERON:0002385!1.20e-11!63;UBERON:0001015!1.20e-11!63;UBERON:0000383!1.20e-11!63;UBERON:0005256!4.70e-10!143;UBERON:0001009!2.90e-09!113;UBERON:0000055!3.25e-09!69;UBERON:0004535!4.44e-09!110;UBERON:0004872!7.08e-09!84;UBERON:0001637!3.69e-08!42;UBERON:0003509!3.69e-08!42;UBERON:0004572!3.69e-08!42;UBERON:0000119!3.75e-08!312;UBERON:0000483!4.25e-08!309;UBERON:0003914!5.22e-08!118;UBERON:0001981!2.08e-07!60;UBERON:0007500!2.08e-07!60;UBERON:0004537!2.08e-07!60;UBERON:0006965!2.08e-07!60;UBERON:0000490!2.45e-07!138;UBERON:0000475!3.25e-07!365 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.89e-14,78;UBERON:0003077,2.13e-13,72;UBERON:0007285,2.13e-13,72;UBERON:0002329,2.17e-13,71;UBERON:0003059,2.17e-13,71;UBERON:0007282,2.17e-13,71;UBERON:0004290,2.17e-13,71;UBERON:0009618,2.17e-13,71;UBERON:0007524,2.84e-13,73;UBERON:0000486,4.03e-13,83;UBERON:0002049,6.87e-13,78;UBERON:0007798,6.87e-13,78;UBERON:0001134,7.99e-13,62;UBERON:0002036,7.99e-13,62;UBERON:0003082,7.99e-13,62;UBERON:0002385,3.72e-12,64;UBERON:0001015,3.72e-12,64;UBERON:0000383,3.72e-12,64;UBERON:0001009,9.70e-10,112;UBERON:0000055,1.14e-09,68;UBERON:0004535,1.49e-09,109;UBERON:0000119,2.28e-09,309;UBERON:0000483,2.39e-09,306;UBERON:0004872,3.32e-09,83;UBERON:0000490,2.46e-08,148;UBERON:0001637,3.47e-08,42;UBERON:0003509,3.47e-08,42;UBERON:0004572,3.47e-08,42;UBERON:0007500,7.95e-08,59;UBERON:0001981,7.95e-08,59;UBERON:0004537,7.95e-08,59;UBERON:0006965,7.95e-08,59;UBERON:0003914,9.50e-08,117;UBERON:0005256,5.05e-07,122 | |||
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| ||
|short_description=p2@UROD | |||
}} | }} |
Latest revision as of 07:13, 18 September 2015
Short description: | p2@UROD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_UROD_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_ENST00000491300_5end |
EntrezGene: | UROD |
HGNC: | 12591 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.48e-14 | 121 |
muscle precursor cell | 3.93e-14 | 58 |
myoblast | 3.93e-14 | 58 |
multi-potent skeletal muscle stem cell | 3.93e-14 | 58 |
muscle cell | 3.70e-13 | 55 |
smooth muscle cell | 4.17e-11 | 43 |
smooth muscle myoblast | 4.17e-11 | 43 |
electrically responsive cell | 5.92e-11 | 61 |
electrically active cell | 5.92e-11 | 61 |
somatic stem cell | 5.42e-10 | 433 |
multi fate stem cell | 1.63e-09 | 427 |
stem cell | 4.90e-09 | 441 |
fibroblast | 2.21e-08 | 76 |
vascular associated smooth muscle cell | 9.32e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.89e-14 | 78 |
paraxial mesoderm | 2.13e-13 | 72 |
presumptive paraxial mesoderm | 2.13e-13 | 72 |
somite | 2.17e-13 | 71 |
presomitic mesoderm | 2.17e-13 | 71 |
presumptive segmental plate | 2.17e-13 | 71 |
dermomyotome | 2.17e-13 | 71 |
trunk paraxial mesoderm | 2.17e-13 | 71 |
dense mesenchyme tissue | 2.84e-13 | 73 |
multilaminar epithelium | 4.03e-13 | 83 |
vasculature | 6.87e-13 | 78 |
vascular system | 6.87e-13 | 78 |
skeletal muscle tissue | 7.99e-13 | 62 |
striated muscle tissue | 7.99e-13 | 62 |
myotome | 7.99e-13 | 62 |
muscle tissue | 3.72e-12 | 64 |
musculature | 3.72e-12 | 64 |
musculature of body | 3.72e-12 | 64 |
circulatory system | 9.70e-10 | 112 |
vessel | 1.14e-09 | 68 |
cardiovascular system | 1.49e-09 | 109 |
cell layer | 2.28e-09 | 309 |
epithelium | 2.39e-09 | 306 |
splanchnic layer of lateral plate mesoderm | 3.32e-09 | 83 |
unilaminar epithelium | 2.46e-08 | 148 |
artery | 3.47e-08 | 42 |
arterial blood vessel | 3.47e-08 | 42 |
arterial system | 3.47e-08 | 42 |
epithelial tube open at both ends | 7.95e-08 | 59 |
blood vessel | 7.95e-08 | 59 |
blood vasculature | 7.95e-08 | 59 |
vascular cord | 7.95e-08 | 59 |
epithelial tube | 9.50e-08 | 117 |
trunk mesenchyme | 5.05e-07 | 122 |