FFCP PHASE1:Hg19::chr1:26607290..26607307,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:26607290..26607307,+ to FFCP PHASE1:Hg19::chr1:26607290..26607307,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:26607290..26607307,+ | |||
|coexpression_cluster_id=C853 | |||
|description=CAGE_peak_at_chr1:26607290..26607307,+ | |||
|id=chr1:26607290..26607307,+ | |||
|ontology_enrichment_celltype=CL:0002371!5.66e-29!591;CL:0000144!3.59e-25!625;CL:0000723!3.36e-23!436;CL:0000048!1.41e-22!430;CL:0000034!3.74e-22!444;CL:0000003!6.02e-19!722;CL:0002057!8.62e-18!42;CL:0000548!4.17e-16!679;CL:0000004!4.17e-16!679;CL:0000255!4.17e-16!679;CL:0000012!4.31e-16!682;CL:0000860!1.45e-15!45;CL:0002320!2.45e-15!365;CL:0000134!3.24e-14!358;CL:0000766!8.73e-14!76;CL:0002194!1.97e-12!63;CL:0000576!1.97e-12!63;CL:0000040!1.97e-12!63;CL:0000559!1.97e-12!63;CL:0000839!3.95e-12!70;CL:0002009!5.74e-12!65;CL:0000557!2.08e-11!71;CL:0000219!1.67e-10!390;CL:0000063!3.80e-10!578;CL:0000183!2.93e-09!59;CL:0000763!5.94e-09!112;CL:0000049!5.94e-09!112;CL:0000680!6.19e-09!57;CL:0000056!6.19e-09!57;CL:0000355!6.19e-09!57;CL:0000222!9.33e-09!119;CL:0000187!1.80e-08!54;CL:0000192!1.28e-07!42;CL:0000514!1.28e-07!42;CL:0000055!1.37e-07!180;CL:0000393!7.43e-07!60;CL:0000211!7.43e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.31e-16;33!CL:0002057;2.31e-16;33!CL:0000473;9.74e-15;39!CL:0000234;9.74e-15;39!CL:0000576;2.09e-09;48!CL:0000766;2.92e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,2.48e-24,433;CL:0000048,9.52e-24,427;CL:0000034,4.75e-23,441;CL:0000473,1.52e-20,48;CL:0000234,1.52e-20,48;CL:0000860,5.55e-19,42;CL:0002057,5.55e-19,42;CL:0002320,2.94e-16,361;CL:0000766,1.54e-15,72;CL:0000134,4.72e-15,354;CL:0002194,3.90e-14,59;CL:0000576,3.90e-14,59;CL:0000040,3.90e-14,59;CL:0000559,3.90e-14,59;CL:0000839,1.27e-13,66;CL:0002009,2.08e-13,61;CL:0000557,6.05e-13,67;CL:0000219,7.50e-11,386;CL:0000680,2.26e-09,58;CL:0000056,2.26e-09,58;CL:0000355,2.26e-09,58;CL:0000763,2.54e-09,108;CL:0000049,2.54e-09,108;CL:0000187,7.17e-09,55;CL:0000222,2.14e-08,121;CL:0000192,4.25e-08,43;CL:0000514,4.25e-08,43;CL:0000393,6.25e-07,61;CL:0000211,6.25e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;3.28e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.15e-19!167;UBERON:0003081!1.32e-18!216;UBERON:0002384!1.21e-14!375;UBERON:0002371!6.65e-13!80;UBERON:0002390!6.67e-12!102;UBERON:0003061!6.67e-12!102;UBERON:0004765!1.41e-11!101;UBERON:0001434!1.41e-11!101;UBERON:0002193!3.75e-11!112;UBERON:0000914!1.58e-10!83;UBERON:0002329!1.58e-10!83;UBERON:0003077!1.58e-10!83;UBERON:0003059!1.58e-10!83;UBERON:0007282!1.58e-10!83;UBERON:0009618!1.58e-10!83;UBERON:0007285!1.58e-10!83;UBERON:0001474!3.74e-10!86;UBERON:0000486!1.76e-09!82;UBERON:0004290!1.85e-09!70;UBERON:0000926!5.38e-09!448;UBERON:0004120!5.38e-09!448;UBERON:0006603!5.38e-09!448;UBERON:0001637!3.16e-08!42;UBERON:0003509!3.16e-08!42;UBERON:0004572!3.16e-08!42;UBERON:0001134!1.49e-07!61;UBERON:0002036!1.49e-07!61;UBERON:0003082!1.49e-07!61;UBERON:0002405!2.10e-07!115;UBERON:0004535!4.46e-07!110;UBERON:0002385!6.43e-07!63;UBERON:0001015!6.43e-07!63;UBERON:0000383!6.43e-07!63;UBERON:0005256!9.52e-07!143 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,6.28e-22,167;UBERON:0000926,9.80e-21,315;UBERON:0004120,9.80e-21,315;UBERON:0006603,9.80e-21,315;UBERON:0003081,2.28e-19,203;UBERON:0002384,9.62e-16,371;UBERON:0002371,1.44e-14,76;UBERON:0001434,2.07e-13,100;UBERON:0004765,2.46e-13,90;UBERON:0002390,5.64e-13,98;UBERON:0003061,5.64e-13,98;UBERON:0002193,4.81e-12,108;UBERON:0007503,7.01e-12,78;UBERON:0001474,7.72e-12,82;UBERON:0002405,4.31e-11,93;UBERON:0000486,2.23e-10,83;UBERON:0002329,3.91e-10,71;UBERON:0003059,3.91e-10,71;UBERON:0007282,3.91e-10,71;UBERON:0004290,3.91e-10,71;UBERON:0009618,3.91e-10,71;UBERON:0003077,1.09e-09,72;UBERON:0007285,1.09e-09,72;UBERON:0007524,2.92e-09,73;UBERON:0001637,3.72e-08,42;UBERON:0003509,3.72e-08,42;UBERON:0004572,3.72e-08,42;UBERON:0001134,6.89e-08,62;UBERON:0002036,6.89e-08,62;UBERON:0003082,6.89e-08,62;UBERON:0002385,4.19e-07,64;UBERON:0001015,4.19e-07,64;UBERON:0000383,4.19e-07,64;UBERON:0004535,8.71e-07,109 | |||
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| ||
|short_description=p@chr1:26607290..26607307,+ | |||
}} | }} |
Latest revision as of 06:34, 28 July 2015
Short description: | p@chr1:26607290..26607307, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:26607290..26607307, + |
Coexpression cluster: | C853_Neutrophils_leiomyoma_Smooth_Monocytederived_CD14_Osteoblast_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 2.48e-24 | 433 |
multi fate stem cell | 9.52e-24 | 427 |
stem cell | 4.75e-23 | 441 |
defensive cell | 1.52e-20 | 48 |
phagocyte | 1.52e-20 | 48 |
classical monocyte | 5.55e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.55e-19 | 42 |
connective tissue cell | 2.94e-16 | 361 |
myeloid leukocyte | 1.54e-15 | 72 |
mesenchymal cell | 4.72e-15 | 354 |
monopoietic cell | 3.90e-14 | 59 |
monocyte | 3.90e-14 | 59 |
monoblast | 3.90e-14 | 59 |
promonocyte | 3.90e-14 | 59 |
myeloid lineage restricted progenitor cell | 1.27e-13 | 66 |
macrophage dendritic cell progenitor | 2.08e-13 | 61 |
granulocyte monocyte progenitor cell | 6.05e-13 | 67 |
motile cell | 7.50e-11 | 386 |
muscle precursor cell | 2.26e-09 | 58 |
myoblast | 2.26e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.26e-09 | 58 |
myeloid cell | 2.54e-09 | 108 |
common myeloid progenitor | 2.54e-09 | 108 |
muscle cell | 7.17e-09 | 55 |
mesodermal cell | 2.14e-08 | 121 |
smooth muscle cell | 4.25e-08 | 43 |
smooth muscle myoblast | 4.25e-08 | 43 |
electrically responsive cell | 6.25e-07 | 61 |
electrically active cell | 6.25e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 6.28e-22 | 167 |
mesoderm | 9.80e-21 | 315 |
mesoderm-derived structure | 9.80e-21 | 315 |
presumptive mesoderm | 9.80e-21 | 315 |
lateral plate mesoderm | 2.28e-19 | 203 |
connective tissue | 9.62e-16 | 371 |
bone marrow | 1.44e-14 | 76 |
skeletal system | 2.07e-13 | 100 |
skeletal element | 2.46e-13 | 90 |
hematopoietic system | 5.64e-13 | 98 |
blood island | 5.64e-13 | 98 |
hemolymphoid system | 4.81e-12 | 108 |
epithelial vesicle | 7.01e-12 | 78 |
bone element | 7.72e-12 | 82 |
immune system | 4.31e-11 | 93 |
multilaminar epithelium | 2.23e-10 | 83 |
somite | 3.91e-10 | 71 |
presomitic mesoderm | 3.91e-10 | 71 |
presumptive segmental plate | 3.91e-10 | 71 |
dermomyotome | 3.91e-10 | 71 |
trunk paraxial mesoderm | 3.91e-10 | 71 |
paraxial mesoderm | 1.09e-09 | 72 |
presumptive paraxial mesoderm | 1.09e-09 | 72 |
dense mesenchyme tissue | 2.92e-09 | 73 |
artery | 3.72e-08 | 42 |
arterial blood vessel | 3.72e-08 | 42 |
arterial system | 3.72e-08 | 42 |
skeletal muscle tissue | 6.89e-08 | 62 |
striated muscle tissue | 6.89e-08 | 62 |
myotome | 6.89e-08 | 62 |
muscle tissue | 4.19e-07 | 64 |
musculature | 4.19e-07 | 64 |
musculature of body | 4.19e-07 | 64 |
cardiovascular system | 8.71e-07 | 109 |