FFCP PHASE1:Hg19::chr1:200992771..200992815,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:200992771..200992815,- to FFCP PHASE1:Hg19::chr1:200992771..200992815,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23046 | |EntrezGene=23046 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29442 | |HGNC=29442 | ||
|TSSclassifier=strong | |||
|UniProt=O75037,B2RP62 | |UniProt=O75037,B2RP62 | ||
|association_with_transcript=12bp_to_ENST00000332129,ENST00000422435,NM_001252100,NM_001252102,NM_001252103,NM_017596,uc001gvr.1,uc001gvs.1,uc009wzl.1,uc010ppn.1_5end | |||
|cluster_id=chr1:200992771..200992815,- | |||
|coexpression_cluster_id=C1760 | |||
|description=CAGE_peak_1_at_KIF21B_5end | |||
|id=chr1:200992771..200992815,- | |||
|ontology_enrichment_celltype=CL:0000037!6.07e-36!172;CL:0000566!6.07e-36!172;CL:0000988!1.05e-35!182;CL:0002032!5.75e-34!165;CL:0000837!5.75e-34!165;CL:0000738!7.05e-29!140;CL:0002087!7.50e-27!119;CL:0000542!2.13e-24!53;CL:0000051!2.13e-24!53;CL:0000838!5.84e-24!52;CL:0002031!1.03e-22!124;CL:0000084!7.97e-14!25;CL:0000827!7.97e-14!25;CL:0000763!1.83e-12!112;CL:0000049!1.83e-12!112;CL:0000791!1.07e-10!18;CL:0000789!1.07e-10!18;CL:0002420!1.07e-10!18;CL:0002419!1.07e-10!18;CL:0000790!1.07e-10!18;CL:0000945!1.16e-09!24;CL:0000826!1.16e-09!24;CL:0000766!1.85e-08!76;CL:0000625!7.10e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.39e-16;53!CL:0000084;3.79e-16;25!CL:0000791;2.01e-12;18!CL:0000789;2.01e-12;18!CL:0002419;2.01e-12;18!CL:0000945;3.48e-11;24!CL:0002087;1.68e-09;104!CL:0000625;7.33e-08;11!CL:0000988;3.08e-07;177!CL:0000094;5.51e-07;8!CL:0000236;5.68e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.02e-36,177;CL:0000037,2.93e-36,168;CL:0002032,6.97e-35,161;CL:0000837,6.97e-35,161;CL:0000738,2.79e-29,136;CL:0002087,1.07e-28,115;CL:0000542,1.20e-28,53;CL:0000051,1.20e-28,53;CL:0000838,3.97e-28,52;CL:0002031,8.32e-23,120;CL:0000084,4.25e-16,25;CL:0000827,4.25e-16,25;CL:0000791,2.16e-12,18;CL:0000789,2.16e-12,18;CL:0002420,2.16e-12,18;CL:0002419,2.16e-12,18;CL:0000790,2.16e-12,18;CL:0000945,3.63e-11,24;CL:0000826,3.63e-11,24;CL:0000763,5.10e-11,108;CL:0000049,5.10e-11,108;CL:0000625,7.25e-08,11;CL:0000236,3.46e-07,14;CL:0000766,4.15e-07,72;CL:0000094,5.40e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000051;1.39e-16;53!CL:0000790;2.01e-12;18 | |||
|ontology_enrichment_disease=DOID:2531!1.45e-11!51;DOID:0060083!1.45e-11!51;DOID:1240!4.38e-09!39 | |||
|ontology_enrichment_disease_v019=DOID:2531;6.02e-08;51!DOID:0060083;6.02e-08;51!DOID:1240;8.54e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.90e-12,51;DOID:0060083,1.90e-12,51;DOID:1240,1.54e-09,39 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.72e-16!86;UBERON:0001017!7.35e-16!82;UBERON:0007023!1.20e-15!115;UBERON:0001049!2.12e-14!57;UBERON:0005068!2.12e-14!57;UBERON:0006241!2.12e-14!57;UBERON:0007135!2.12e-14!57;UBERON:0000073!2.23e-14!94;UBERON:0001016!2.23e-14!94;UBERON:0003080!6.41e-13!42;UBERON:0002780!7.31e-13!41;UBERON:0001890!7.31e-13!41;UBERON:0006240!7.31e-13!41;UBERON:0001893!1.36e-12!34;UBERON:0002020!2.37e-12!34;UBERON:0003528!2.37e-12!34;UBERON:0002791!3.97e-12!33;UBERON:0001869!4.73e-12!32;UBERON:0000955!5.93e-12!69;UBERON:0006238!5.93e-12!69;UBERON:0002616!1.55e-11!59;UBERON:0002619!3.85e-11!22;UBERON:0001950!4.69e-10!20;UBERON:0002390!1.84e-09!102;UBERON:0003061!1.84e-09!102;UBERON:0000178!1.94e-09!15;UBERON:0000179!1.94e-09!15;UBERON:0000463!1.94e-09!15;UBERON:0000956!2.27e-09!25;UBERON:0000203!2.27e-09!25;UBERON:0002193!9.06e-09!112;UBERON:0003056!2.57e-08!61;UBERON:0003075!3.28e-08!86;UBERON:0007284!3.28e-08!86;UBERON:0002346!1.07e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.89e-12;22!UBERON:0001893;1.81e-11;34!UBERON:0001869;2.25e-11;32!UBERON:0002791;3.49e-11;32!UBERON:0003528;4.26e-11;34!UBERON:0002020;4.26e-11;34!UBERON:0001950;5.45e-11;20!UBERON:0000178;6.83e-11;15!UBERON:0000179;6.83e-11;15!UBERON:0000463;6.83e-11;15!UBERON:0002780;9.88e-11;41!UBERON:0001890;9.88e-11;41!UBERON:0000956;1.05e-09;25!UBERON:0000203;1.05e-09;25!UBERON:0000073;2.56e-08;53!UBERON:0002616;2.56e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.41e-16,81;UBERON:0001049,8.91e-16,56;UBERON:0005068,8.91e-16,56;UBERON:0006241,8.91e-16,56;UBERON:0007135,8.91e-16,56;UBERON:0000073,1.38e-14,53;UBERON:0002616,1.38e-14,53;UBERON:0002780,2.01e-14,41;UBERON:0001890,2.01e-14,41;UBERON:0003080,2.01e-14,41;UBERON:0006240,2.01e-14,41;UBERON:0001016,2.62e-14,89;UBERON:0007023,1.18e-13,114;UBERON:0001893,1.74e-13,34;UBERON:0003528,3.27e-13,34;UBERON:0002020,3.27e-13,34;UBERON:0001869,7.70e-13,32;UBERON:0002791,1.52e-12,32;UBERON:0002619,2.93e-12,22;UBERON:0000955,4.21e-12,68;UBERON:0006238,4.21e-12,68;UBERON:0001950,5.52e-11,20;UBERON:0000178,6.72e-11,15;UBERON:0000179,6.72e-11,15;UBERON:0000463,6.72e-11,15;UBERON:0000956,1.05e-09,25;UBERON:0000203,1.05e-09,25;UBERON:0003056,3.42e-09,61;UBERON:0002390,6.04e-09,98;UBERON:0003061,6.04e-09,98;UBERON:0003075,6.59e-09,82;UBERON:0007284,6.59e-09,82;UBERON:0002346,3.62e-08,86;UBERON:0002193,1.04e-07,108 | |||
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| ||
|short_description=p1@KIF21B | |||
}} | }} |
Latest revision as of 16:51, 19 September 2015
Short description: | p1@KIF21B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KIF21B_5end |
Coexpression cluster: | C1760_brain_occipital_temporal_duodenum_parietal_medulloblastoma_myeloma |
Association with transcript: | 12bp_to_ENST00000332129, ENST00000422435, NM_001252100, NM_001252102, NM_001252103, NM_017596, uc001gvr.1, uc001gvs.1, uc009wzl.1, uc010ppn.1_5end |
EntrezGene: | KIF21B |
HGNC: | 29442 |
UniProt: | O75037B2RP62 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.02e-36 | 177 |
hematopoietic stem cell | 2.93e-36 | 168 |
hematopoietic oligopotent progenitor cell | 6.97e-35 | 161 |
hematopoietic multipotent progenitor cell | 6.97e-35 | 161 |
leukocyte | 2.79e-29 | 136 |
nongranular leukocyte | 1.07e-28 | 115 |
lymphocyte | 1.20e-28 | 53 |
common lymphoid progenitor | 1.20e-28 | 53 |
lymphoid lineage restricted progenitor cell | 3.97e-28 | 52 |
hematopoietic lineage restricted progenitor cell | 8.32e-23 | 120 |
T cell | 4.25e-16 | 25 |
pro-T cell | 4.25e-16 | 25 |
mature alpha-beta T cell | 2.16e-12 | 18 |
alpha-beta T cell | 2.16e-12 | 18 |
immature T cell | 2.16e-12 | 18 |
mature T cell | 2.16e-12 | 18 |
immature alpha-beta T cell | 2.16e-12 | 18 |
lymphocyte of B lineage | 3.63e-11 | 24 |
pro-B cell | 3.63e-11 | 24 |
myeloid cell | 5.10e-11 | 108 |
common myeloid progenitor | 5.10e-11 | 108 |
CD8-positive, alpha-beta T cell | 7.25e-08 | 11 |
B cell | 3.46e-07 | 14 |
myeloid leukocyte | 4.15e-07 | 72 |
granulocyte | 5.40e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.41e-16 | 81 |
neural tube | 8.91e-16 | 56 |
neural rod | 8.91e-16 | 56 |
future spinal cord | 8.91e-16 | 56 |
neural keel | 8.91e-16 | 56 |
regional part of nervous system | 1.38e-14 | 53 |
regional part of brain | 1.38e-14 | 53 |
regional part of forebrain | 2.01e-14 | 41 |
forebrain | 2.01e-14 | 41 |
anterior neural tube | 2.01e-14 | 41 |
future forebrain | 2.01e-14 | 41 |
nervous system | 2.62e-14 | 89 |
adult organism | 1.18e-13 | 114 |
telencephalon | 1.74e-13 | 34 |
brain grey matter | 3.27e-13 | 34 |
gray matter | 3.27e-13 | 34 |
cerebral hemisphere | 7.70e-13 | 32 |
regional part of telencephalon | 1.52e-12 | 32 |
regional part of cerebral cortex | 2.93e-12 | 22 |
brain | 4.21e-12 | 68 |
future brain | 4.21e-12 | 68 |
neocortex | 5.52e-11 | 20 |
blood | 6.72e-11 | 15 |
haemolymphatic fluid | 6.72e-11 | 15 |
organism substance | 6.72e-11 | 15 |
cerebral cortex | 1.05e-09 | 25 |
pallium | 1.05e-09 | 25 |
pre-chordal neural plate | 3.42e-09 | 61 |
hematopoietic system | 6.04e-09 | 98 |
blood island | 6.04e-09 | 98 |
neural plate | 6.59e-09 | 82 |
presumptive neural plate | 6.59e-09 | 82 |
neurectoderm | 3.62e-08 | 86 |
hemolymphoid system | 1.04e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.90e-12 | 51 |
immune system cancer | 1.90e-12 | 51 |
leukemia | 1.54e-09 | 39 |