FFCP PHASE1:Hg19::chr1:152009460..152009498,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:152009460..152009498,- to FFCP PHASE1:Hg19::chr1:152009460..152009498,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6282 | |EntrezGene=6282 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10488 | |HGNC=10488 | ||
|TSSclassifier=strong | |||
|UniProt=P31949 | |UniProt=P31949 | ||
|association_with_transcript=12bp_to_ENST00000271638,NM_005620,uc001ezn.2_5end | |||
|cluster_id=chr1:152009460..152009498,- | |||
|description=CAGE_peak_1_at_S100A11_5end | |||
|id=chr1:152009460..152009498,- | |||
|ontology_enrichment_celltype=CL:0000548!1.69e-35!679;CL:0000004!1.69e-35!679;CL:0000255!1.69e-35!679;CL:0000012!2.96e-34!682;CL:0000003!6.08e-29!722;CL:0002371!1.00e-28!591;CL:0000144!4.36e-27!625;CL:0000063!8.43e-22!578;CL:0000766!3.66e-17!76;CL:0000860!4.29e-16!45;CL:0002194!4.64e-16!63;CL:0000576!4.64e-16!63;CL:0000040!4.64e-16!63;CL:0000559!4.64e-16!63;CL:0002057!5.86e-16!42;CL:0002009!1.29e-15!65;CL:0000557!1.24e-13!71;CL:0000839!2.92e-13!70;CL:0000066!4.88e-11!254;CL:0000220!1.30e-09!246;CL:0000192!2.71e-09!42;CL:0000514!2.71e-09!42;CL:0002321!3.89e-09!248;CL:0000183!5.19e-09!59;CL:0000680!1.34e-08!57;CL:0000056!1.34e-08!57;CL:0000355!1.34e-08!57;CL:0000187!2.84e-08!54;CL:0000055!3.27e-08!180;CL:0000359!5.12e-08!32;CL:0000723!1.85e-07!436;CL:0000222!2.45e-07!119;CL:0000048!5.13e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.44e-14;33!CL:0002057;1.44e-14;33!CL:0000473;2.59e-14;39!CL:0000234;2.59e-14;39!CL:0000576;6.76e-10;48!CL:0000766;2.11e-08;69!CL:0000359;1.31e-07;32!CL:0000192;7.65e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.33e-18,48;CL:0000234,1.33e-18,48;CL:0000766,4.56e-17,72;CL:0002194,4.99e-16,59;CL:0000576,4.99e-16,59;CL:0000040,4.99e-16,59;CL:0000559,4.99e-16,59;CL:0000860,5.86e-16,42;CL:0002057,5.86e-16,42;CL:0002009,1.48e-15,61;CL:0000557,1.73e-13,67;CL:0000839,4.09e-13,66;CL:0000066,5.01e-11,253;CL:0000192,3.46e-09,43;CL:0000514,3.46e-09,43;CL:0002321,3.75e-09,250;CL:0000680,1.53e-08,58;CL:0000056,1.53e-08,58;CL:0000355,1.53e-08,58;CL:0000187,3.26e-08,55;CL:0000359,5.12e-08,32;CL:0000222,2.58e-07,121;CL:0000723,3.61e-07,433;CL:0000048,9.77e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;7.80e-12;42!CL:0000514;7.65e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.08e-23!448;UBERON:0004120!2.08e-23!448;UBERON:0006603!2.08e-23!448;UBERON:0003081!3.29e-21!216;UBERON:0002204!1.96e-19!167;UBERON:0002371!2.23e-13!80;UBERON:0004765!8.30e-13!101;UBERON:0001434!8.30e-13!101;UBERON:0001474!2.73e-12!86;UBERON:0002390!2.72e-11!102;UBERON:0003061!2.72e-11!102;UBERON:0002193!6.74e-11!112;UBERON:0000467!3.45e-10!625;UBERON:0000480!3.84e-10!626;UBERON:0000486!4.26e-10!82;UBERON:0000468!7.81e-10!659;UBERON:0000914!1.15e-08!83;UBERON:0002329!1.15e-08!83;UBERON:0003077!1.15e-08!83;UBERON:0003059!1.15e-08!83;UBERON:0007282!1.15e-08!83;UBERON:0009618!1.15e-08!83;UBERON:0007285!1.15e-08!83;UBERON:0000923!1.67e-08!604;UBERON:0005291!1.67e-08!604;UBERON:0006598!1.67e-08!604;UBERON:0002532!1.67e-08!604;UBERON:0002050!2.07e-08!605;UBERON:0005423!2.07e-08!605;UBERON:0002100!1.20e-07!216;UBERON:0005256!1.34e-07!143;UBERON:0004290!1.70e-07!70;UBERON:0000922!2.08e-07!612;UBERON:0003102!5.46e-07!95;UBERON:0001134!7.34e-07!61;UBERON:0002036!7.34e-07!61;UBERON:0003082!7.34e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.82e-20,315;UBERON:0004120,1.82e-20,315;UBERON:0006603,1.82e-20,315;UBERON:0002204,6.04e-19,167;UBERON:0003081,6.15e-18,203;UBERON:0002371,3.41e-13,76;UBERON:0004765,4.67e-13,90;UBERON:0001434,2.26e-12,100;UBERON:0001474,4.59e-12,82;UBERON:0002390,4.86e-11,98;UBERON:0003061,4.86e-11,98;UBERON:0002193,1.24e-10,108;UBERON:0002405,2.44e-10,93;UBERON:0000486,4.69e-10,83;UBERON:0007503,1.66e-08,78;UBERON:0003102,3.09e-08,99;UBERON:0005423,1.17e-07,581;UBERON:0002329,1.82e-07,71;UBERON:0003059,1.82e-07,71;UBERON:0007282,1.82e-07,71;UBERON:0004290,1.82e-07,71;UBERON:0009618,1.82e-07,71;UBERON:0007524,4.06e-07,73;UBERON:0002100,4.50e-07,199;UBERON:0003077,5.71e-07,72;UBERON:0007285,5.71e-07,72;UBERON:0001134,7.93e-07,62;UBERON:0002036,7.93e-07,62;UBERON:0003082,7.93e-07,62 | |||
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| ||
|short_description=p1@S100A11 | |||
}} | }} |
Latest revision as of 02:45, 17 September 2015
Short description: | p1@S100A11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_S100A11_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_ENST00000271638, NM_005620, uc001ezn.2_5end |
EntrezGene: | S100A11 |
HGNC: | 10488 |
UniProt: | P31949 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.33e-18 | 48 |
phagocyte | 1.33e-18 | 48 |
myeloid leukocyte | 4.56e-17 | 72 |
monopoietic cell | 4.99e-16 | 59 |
monocyte | 4.99e-16 | 59 |
monoblast | 4.99e-16 | 59 |
promonocyte | 4.99e-16 | 59 |
classical monocyte | 5.86e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.86e-16 | 42 |
macrophage dendritic cell progenitor | 1.48e-15 | 61 |
granulocyte monocyte progenitor cell | 1.73e-13 | 67 |
myeloid lineage restricted progenitor cell | 4.09e-13 | 66 |
epithelial cell | 5.01e-11 | 253 |
smooth muscle cell | 3.46e-09 | 43 |
smooth muscle myoblast | 3.46e-09 | 43 |
embryonic cell | 3.75e-09 | 250 |
muscle precursor cell | 1.53e-08 | 58 |
myoblast | 1.53e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.53e-08 | 58 |
muscle cell | 3.26e-08 | 55 |
vascular associated smooth muscle cell | 5.12e-08 | 32 |
mesodermal cell | 2.58e-07 | 121 |
somatic stem cell | 3.61e-07 | 433 |
multi fate stem cell | 9.77e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.82e-20 | 315 |
mesoderm-derived structure | 1.82e-20 | 315 |
presumptive mesoderm | 1.82e-20 | 315 |
musculoskeletal system | 6.04e-19 | 167 |
lateral plate mesoderm | 6.15e-18 | 203 |
bone marrow | 3.41e-13 | 76 |
skeletal element | 4.67e-13 | 90 |
skeletal system | 2.26e-12 | 100 |
bone element | 4.59e-12 | 82 |
hematopoietic system | 4.86e-11 | 98 |
blood island | 4.86e-11 | 98 |
hemolymphoid system | 1.24e-10 | 108 |
immune system | 2.44e-10 | 93 |
multilaminar epithelium | 4.69e-10 | 83 |
epithelial vesicle | 1.66e-08 | 78 |
surface structure | 3.09e-08 | 99 |
developing anatomical structure | 1.17e-07 | 581 |
somite | 1.82e-07 | 71 |
presomitic mesoderm | 1.82e-07 | 71 |
presumptive segmental plate | 1.82e-07 | 71 |
dermomyotome | 1.82e-07 | 71 |
trunk paraxial mesoderm | 1.82e-07 | 71 |
dense mesenchyme tissue | 4.06e-07 | 73 |
trunk | 4.50e-07 | 199 |
paraxial mesoderm | 5.71e-07 | 72 |
presumptive paraxial mesoderm | 5.71e-07 | 72 |
skeletal muscle tissue | 7.93e-07 | 62 |
striated muscle tissue | 7.93e-07 | 62 |
myotome | 7.93e-07 | 62 |