FFCP PHASE1:Hg19::chr1:119837610..119837621,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:119837610..119837621,+ to FFCP PHASE1:Hg19::chr1:119837610..119837621,+: NSchange) |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:119837610..119837621,+ | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_at_chr1:119837610..119837621,+ | |||
|id=chr1:119837610..119837621,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.17e-20!5;CL:0002563!7.05e-15!4;CL:0002253!6.69e-14!2;CL:0000039!7.28e-09!7;CL:0000586!7.28e-09!7;CL:0000181!1.85e-08!12;CL:0000417!1.85e-08!12;CL:0000668!1.85e-08!12;CL:0000414!1.85e-08!12;CL:0000412!1.85e-08!12;CL:0000182!1.85e-08!12;CL:1001319!2.63e-07!1;CL:1000600!2.63e-07!1;CL:0000223!3.24e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002253;5.48e-18;2!CL:0000322;2.59e-12;3!CL:0002563;1.12e-09;4!CL:0000082;5.94e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,5.48e-18,2;CL:0000322,2.59e-12,3;CL:0002563,1.12e-09,4;CL:0000082,5.94e-08,19 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.25e-10;30 | |||
|ontology_enrichment_disease=DOID:5409!4.60e-15!4;DOID:1325!4.93e-15!7;DOID:3904!4.93e-15!7;DOID:305!5.38e-12!106;DOID:3905!1.00e-11!9;DOID:3119!2.90e-11!14;DOID:0050615!5.12e-10!16;DOID:0050687!2.80e-09!143;DOID:162!1.63e-08!235;DOID:14566!3.03e-08!239;DOID:0050619!4.57e-08!1;DOID:1357!4.57e-08!1;DOID:1324!4.55e-07!15 | |||
|ontology_enrichment_disease_v019=DOID:0050619;2.58e-34;1!DOID:1357;2.58e-34;1!DOID:1325;7.84e-20;7!DOID:3904;7.84e-20;7!DOID:0050615;2.49e-19;16!DOID:3910;9.07e-18;2!DOID:3905;1.13e-15;9!DOID:1324;8.10e-10;15!DOID:5409;1.32e-09;4!DOID:3908;6.55e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,2.58e-34,1;DOID:1357,2.58e-34,1;DOID:1325,7.84e-20,7;DOID:3904,7.84e-20,7;DOID:0050615,2.49e-19,16;DOID:3910,9.07e-18,2;DOID:3905,1.13e-15,9;DOID:1324,8.10e-10,15;DOID:5409,1.32e-09,4;DOID:3908,6.55e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0003350!3.17e-20!5;UBERON:0001052!4.39e-15!4;UBERON:0001242!7.05e-15!4;UBERON:0001262!7.05e-15!4;UBERON:0004786!7.05e-15!4;UBERON:0004808!7.05e-15!4;UBERON:0001277!7.05e-15!4;UBERON:0000060!4.94e-13!12;UBERON:0004907!3.58e-12!5;UBERON:0003135!1.66e-09!11;UBERON:0005911!9.28e-09!82;UBERON:0000344!1.61e-08!12;UBERON:0001764!4.57e-08!1;UBERON:0001825!4.57e-08!1;UBERON:0000473!8.24e-08!8;UBERON:0002135!1.01e-07!1;UBERON:0001301!1.39e-07!1;UBERON:0004645!2.63e-07!1;UBERON:0001256!2.63e-07!1;UBERON:0001259!2.63e-07!1;UBERON:0000466!4.54e-07!126;UBERON:0000485!7.13e-07!9;UBERON:0004921!9.96e-07!129;UBERON:0004185!9.96e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001764;2.58e-34;1!UBERON:0001825;2.58e-34;1!UBERON:0004903;9.07e-18;2!UBERON:0002173;9.07e-18;2!UBERON:0002186;9.07e-18;2!UBERON:0004821;2.59e-12;3!UBERON:0007499;2.59e-12;3!UBERON:0003215;2.59e-12;3!UBERON:0010368;2.59e-12;3!UBERON:0009911;2.59e-12;3!UBERON:0002299;2.59e-12;3!UBERON:0006524;2.59e-12;3!UBERON:0008874;2.59e-12;3!UBERON:0002169;2.59e-12;3!UBERON:0004894;2.59e-12;3!UBERON:0001052;1.12e-09;4!UBERON:0001242;1.12e-09;4!UBERON:0001262;1.12e-09;4!UBERON:0004786;1.12e-09;4!UBERON:0004808;1.12e-09;4!UBERON:0001277;1.12e-09;4!UBERON:0009856;1.44e-09;4!UBERON:0004907;5.35e-08;5!UBERON:0004802;5.94e-08;19!UBERON:0000115;5.94e-08;19!UBERON:0002048;5.40e-07;22!UBERON:0004807;5.40e-07;22!UBERON:0000117;5.40e-07;22!UBERON:0000171;5.40e-07;22!UBERON:0000170;5.40e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,2.58e-34,1;UBERON:0001825,2.58e-34,1;UBERON:0004903,9.07e-18,2;UBERON:0002173,9.07e-18,2;UBERON:0002186,9.07e-18,2;UBERON:0004821,2.59e-12,3;UBERON:0003215,2.59e-12,3;UBERON:0010368,2.59e-12,3;UBERON:0009911,2.59e-12,3;UBERON:0002299,2.59e-12,3;UBERON:0006524,2.59e-12,3;UBERON:0008874,2.59e-12,3;UBERON:0002169,2.59e-12,3;UBERON:0004894,2.59e-12,3;UBERON:0001052,1.12e-09,4;UBERON:0001242,1.12e-09,4;UBERON:0001262,1.12e-09,4;UBERON:0004786,1.12e-09,4;UBERON:0004808,1.12e-09,4;UBERON:0001277,1.12e-09,4;UBERON:0004907,5.35e-08,5;UBERON:0004802,5.94e-08,19;UBERON:0000115,5.94e-08,19;UBERON:0002048,5.40e-07,22;UBERON:0000117,5.40e-07,22;UBERON:0000171,5.40e-07,22;UBERON:0000170,5.40e-07,22;UBERON:0005597,5.40e-07,22;UBERON:0000118,5.40e-07,22;UBERON:0005911,5.45e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.12549761487054,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,80.0637967045737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62887354279315,0.279282401272254,0,0,0,0,0,0,0,1.16495949527454,0.236349546921671,0.0824158583811665,0.0674035438541849,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4489768550216,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294450700845729,0,0,0,0,0,0,0.198950775161368,0,11.0687160398181,0.109940516745429,0.603851374266694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0.203977659483963,0.801652215796681,0.36757959813938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.12549761487054,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,80.0637967045737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62887354279315,0.279282401272254,0,0,0,0,0,0,0,1.16495949527454,0.236349546921671,0.0824158583811665,0.0674035438541849,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4489768550216,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294450700845729,0,0,0,0,0,0,0.198950775161368,0,11.0687160398181,0.109940516745429,0.603851374266694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0.203977659483963,0.801652215796681,0.36757959813938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:119837610..119837621,+ | |||
}} | }} |
Latest revision as of 20:17, 27 July 2015
Short description: | p@chr1:119837610..119837621, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:119837610..119837621, + |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 5.48e-18 | 2 |
pneumocyte | 2.59e-12 | 3 |
intestinal epithelial cell | 1.12e-09 | 4 |
epithelial cell of lung | 5.94e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 2.58e-34 | 1 |
paranasal sinus | 2.58e-34 | 1 |
bronchoalveolar duct junction | 9.07e-18 | 2 |
alveolar duct | 9.07e-18 | 2 |
bronchiole | 9.07e-18 | 2 |
pulmonary alveolus epithelium | 2.59e-12 | 3 |
alveolus | 2.59e-12 | 3 |
pulmonary lobule | 2.59e-12 | 3 |
lobule | 2.59e-12 | 3 |
alveolus of lung | 2.59e-12 | 3 |
alveolar system | 2.59e-12 | 3 |
pulmonary acinus | 2.59e-12 | 3 |
alveolar sac | 2.59e-12 | 3 |
alveolar wall | 2.59e-12 | 3 |
rectum | 1.12e-09 | 4 |
intestinal mucosa | 1.12e-09 | 4 |
wall of intestine | 1.12e-09 | 4 |
gastrointestinal system mucosa | 1.12e-09 | 4 |
gastrointestinal system epithelium | 1.12e-09 | 4 |
intestinal epithelium | 1.12e-09 | 4 |
lower digestive tract | 5.35e-08 | 5 |
respiratory tract epithelium | 5.94e-08 | 19 |
lung epithelium | 5.94e-08 | 19 |
lung | 5.40e-07 | 22 |
respiratory tube | 5.40e-07 | 22 |
respiration organ | 5.40e-07 | 22 |
pair of lungs | 5.40e-07 | 22 |
lung primordium | 5.40e-07 | 22 |
lung bud | 5.40e-07 | 22 |
endo-epithelium | 5.45e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 2.58e-34 | 1 |
maxillary sinus cancer | 2.58e-34 | 1 |
bronchus cancer | 7.84e-20 | 7 |
bronchogenic carcinoma | 7.84e-20 | 7 |
respiratory system cancer | 2.49e-19 | 16 |
lung adenocarcinoma | 9.07e-18 | 2 |
lung carcinoma | 1.13e-15 | 9 |
lung cancer | 8.10e-10 | 15 |
lung small cell carcinoma | 1.32e-09 | 4 |
non-small cell lung carcinoma | 6.55e-08 | 5 |