FFCP PHASE1:Hg19::chr19:7985198..7985257,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:7985198..7985257,+ to FFCP PHASE1:Hg19::chr19:7985198..7985257,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6618 | |EntrezGene=6618 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11135 | |HGNC=11135 | ||
|TSSclassifier=strong | |||
|UniProt=Q13487 | |UniProt=Q13487 | ||
|association_with_transcript=0bp_to_uc002miw.1_5end | |||
|cluster_id=chr19:7985198..7985257,+ | |||
|coexpression_cluster_id=C895 | |||
|description=CAGE_peak_1_at_SNAPC2_5end | |||
|id=chr19:7985198..7985257,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.42e-27!180;CL:0002321!3.84e-24!248;CL:0000220!3.97e-24!246;CL:0002371!3.02e-14!591;CL:0000222!5.63e-14!119;CL:0000144!6.92e-14!625;CL:0000548!1.65e-13!679;CL:0000004!1.65e-13!679;CL:0000255!1.65e-13!679;CL:0000012!1.64e-12!682;CL:0000221!1.91e-12!71;CL:0000183!5.83e-12!59;CL:0000393!1.06e-10!60;CL:0000211!1.06e-10!60;CL:0000057!4.86e-10!75;CL:0000187!7.83e-10!54;CL:0000133!9.72e-10!59;CL:0000680!3.72e-09!57;CL:0000056!3.72e-09!57;CL:0000355!3.72e-09!57;CL:1000449!1.59e-08!16;CL:0000192!1.75e-08!42;CL:0000514!1.75e-08!42;CL:0000066!7.88e-08!254;CL:0000359!2.60e-07!32;CL:0000333!2.93e-07!41;CL:1000497!3.52e-07!18;CL:0002518!3.52e-07!18;CL:0002077!7.26e-07!33;CL:0002681!8.28e-07!13;CL:0002584!8.28e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.41e-08;15!CL:1000497;5.31e-07;17!CL:0002518;5.31e-07;17!CL:0000359;5.41e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.09e-24,250;CL:0000222,1.91e-14,121;CL:0000221,6.36e-13,72;CL:0000393,6.03e-11,61;CL:0000211,6.03e-11,61;CL:0000187,4.47e-10,55;CL:0000057,9.47e-10,76;CL:0000133,9.72e-10,59;CL:0000680,2.15e-09,58;CL:0000056,2.15e-09,58;CL:0000355,2.15e-09,58;CL:0000192,9.99e-09,43;CL:0000514,9.99e-09,43;CL:1000449,2.60e-08,15;CL:0000066,1.14e-07,253;CL:0002077,2.43e-07,34;CL:0000359,2.60e-07,32;CL:0000333,2.93e-07,41;CL:1000497,6.11e-07,17;CL:0002518,6.11e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!4.45e-11!82;UBERON:0000914!5.60e-11!83;UBERON:0002329!5.60e-11!83;UBERON:0003077!5.60e-11!83;UBERON:0003059!5.60e-11!83;UBERON:0007282!5.60e-11!83;UBERON:0009618!5.60e-11!83;UBERON:0007285!5.60e-11!83;UBERON:0005256!9.52e-11!143;UBERON:0000475!1.52e-10!365;UBERON:0004290!1.36e-09!70;UBERON:0001637!1.36e-09!42;UBERON:0003509!1.36e-09!42;UBERON:0004572!1.36e-09!42;UBERON:0000119!2.08e-09!312;UBERON:0003914!2.69e-09!118;UBERON:0004872!3.68e-09!84;UBERON:0002100!5.26e-09!216;UBERON:0000483!6.17e-09!309;UBERON:0001981!9.77e-09!60;UBERON:0007500!9.77e-09!60;UBERON:0004537!9.77e-09!60;UBERON:0006965!9.77e-09!60;UBERON:0004211!1.59e-08!16;UBERON:0001285!1.59e-08!16;UBERON:0007684!1.59e-08!16;UBERON:0003220!1.59e-08!16;UBERON:0004208!1.59e-08!16;UBERON:0002049!3.19e-08!79;UBERON:0007798!3.19e-08!79;UBERON:0000055!5.68e-08!69;UBERON:0006555!8.36e-08!17;UBERON:0005103!8.36e-08!17;UBERON:0000083!8.36e-08!17;UBERON:0009201!8.36e-08!17;UBERON:0004819!8.36e-08!17;UBERON:0006553!8.36e-08!17;UBERON:0003074!8.36e-08!17;UBERON:0003060!8.36e-08!17;UBERON:0006554!1.25e-07!44;UBERON:0003104!2.16e-07!238;UBERON:0009142!2.16e-07!238;UBERON:0001134!2.48e-07!61;UBERON:0002036!2.48e-07!61;UBERON:0003082!2.48e-07!61;UBERON:0001008!2.67e-07!45;UBERON:0000080!3.11e-07!18;UBERON:0002120!3.11e-07!18;UBERON:0004875!3.11e-07!18;UBERON:0005721!3.11e-07!18;UBERON:0005754!3.11e-07!18;UBERON:0007297!3.11e-07!18;UBERON:0005085!4.90e-07!29;UBERON:0004573!5.47e-07!33;UBERON:0004571!5.47e-07!33;UBERON:0002385!5.81e-07!63;UBERON:0001015!5.81e-07!63;UBERON:0000383!5.81e-07!63;UBERON:0000490!6.48e-07!138;UBERON:0000481!7.46e-07!347;UBERON:0001225!8.28e-07!13;UBERON:0008987!8.28e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;7.33e-09;30!UBERON:0001008;7.33e-09;30!UBERON:0006555;2.41e-08;15!UBERON:0004819;2.41e-08;15!UBERON:0001285;2.41e-08;15!UBERON:0007684;2.41e-08;15!UBERON:0003914;6.01e-08;74!UBERON:0002113;2.46e-07;24!UBERON:0011143;2.46e-07;24!UBERON:0000353;5.10e-07;15!UBERON:0001637;8.06e-07;42!UBERON:0003509;8.06e-07;42!UBERON:0004572;8.06e-07;42 | |||
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| ||
|short_description=p1@SNAPC2 | |||
}} | }} |
Latest revision as of 22:49, 24 September 2015
Short description: | p1@SNAPC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNAPC2_5end |
Coexpression cluster: | C895_Mesenchymal_Renal_Alveolar_Fibroblast_Pericytes_Trabecular_Osteoblast |
Association with transcript: | 0bp_to_uc002miw.1_5end |
EntrezGene: | SNAPC2 |
HGNC: | 11135 |
UniProt: | Q13487 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.09e-24 | 250 |
mesodermal cell | 1.91e-14 | 121 |
ectodermal cell | 6.36e-13 | 72 |
electrically responsive cell | 6.03e-11 | 61 |
electrically active cell | 6.03e-11 | 61 |
muscle cell | 4.47e-10 | 55 |
fibroblast | 9.47e-10 | 76 |
neurectodermal cell | 9.72e-10 | 59 |
muscle precursor cell | 2.15e-09 | 58 |
myoblast | 2.15e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.15e-09 | 58 |
smooth muscle cell | 9.99e-09 | 43 |
smooth muscle myoblast | 9.99e-09 | 43 |
epithelial cell of nephron | 2.60e-08 | 15 |
epithelial cell | 1.14e-07 | 253 |
ecto-epithelial cell | 2.43e-07 | 34 |
vascular associated smooth muscle cell | 2.60e-07 | 32 |
migratory neural crest cell | 2.93e-07 | 41 |
kidney cell | 6.11e-07 | 17 |
kidney epithelial cell | 6.11e-07 | 17 |