FFCP PHASE1:Hg19::chr19:55769885..55769941,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:55769885..55769941,- to FFCP PHASE1:Hg19::chr19:55769885..55769941,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22870 | |EntrezGene=22870 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29195 | |HGNC=29195 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UPN7 | |UniProt=Q9UPN7 | ||
|association_with_transcript=96bp_to_ENST00000412770,NM_014931,uc002qjw.3_5end | |||
|cluster_id=chr19:55769885..55769941,- | |||
|description=CAGE_peak_2_at_PPP6R1_5end | |||
|id=chr19:55769885..55769941,- | |||
|ontology_enrichment_celltype=CL:0000542!1.43e-13!53;CL:0000051!1.43e-13!53;CL:0000838!2.23e-13!52;CL:0000084!1.81e-08!25;CL:0000827!1.81e-08!25;CL:0000791!5.27e-07!18;CL:0000789!5.27e-07!18;CL:0002420!5.27e-07!18;CL:0002419!5.27e-07!18;CL:0000790!5.27e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;8.78e-09;25!CL:0000542;3.94e-08;53!CL:0000791;3.63e-07;18!CL:0000789;3.63e-07;18!CL:0002419;3.63e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.37e-13,53;CL:0000051,1.37e-13,53;CL:0000838,2.13e-13,52;CL:0000084,1.76e-08,25;CL:0000827,1.76e-08,25;CL:0000791,5.16e-07,18;CL:0000789,5.16e-07,18;CL:0002420,5.16e-07,18;CL:0002419,5.16e-07,18;CL:0000790,5.16e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;3.94e-08;53!CL:0000790;3.63e-07;18 | |||
|ontology_enrichment_disease=DOID:2531!1.29e-07!51;DOID:0060083!1.29e-07!51;DOID:1240!7.46e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.48e-07,51;DOID:0060083,1.48e-07,51;DOID:1240,6.92e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001869!1.55e-13!32;UBERON:0001893!9.96e-13!34;UBERON:0002020!1.30e-12!34;UBERON:0003528!1.30e-12!34;UBERON:0002780!1.95e-12!41;UBERON:0001890!1.95e-12!41;UBERON:0006240!1.95e-12!41;UBERON:0002791!3.94e-12!33;UBERON:0002619!1.06e-11!22;UBERON:0003080!1.62e-11!42;UBERON:0001950!1.47e-10!20;UBERON:0000955!1.95e-10!69;UBERON:0006238!1.95e-10!69;UBERON:0002616!3.76e-10!59;UBERON:0001049!4.90e-10!57;UBERON:0005068!4.90e-10!57;UBERON:0006241!4.90e-10!57;UBERON:0007135!4.90e-10!57;UBERON:0000956!7.86e-10!25;UBERON:0000203!7.86e-10!25;UBERON:0001017!1.37e-08!82;UBERON:0003056!1.91e-08!61;UBERON:0005743!2.68e-08!86;UBERON:0003075!5.85e-07!86;UBERON:0007284!5.85e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.83e-12;32!UBERON:0002619;7.48e-12;22!UBERON:0003528;3.35e-11;34!UBERON:0002020;3.35e-11;34!UBERON:0001893;5.01e-11;34!UBERON:0002791;5.41e-11;32!UBERON:0001950;1.08e-10;20!UBERON:0000956;6.84e-10;25!UBERON:0000203;6.84e-10;25!UBERON:0002780;4.98e-09;41!UBERON:0001890;4.98e-09;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.48e-13,32;UBERON:0001893,9.54e-13,34;UBERON:0003528,1.24e-12,34;UBERON:0002020,1.24e-12,34;UBERON:0002780,1.87e-12,41;UBERON:0001890,1.87e-12,41;UBERON:0003080,1.87e-12,41;UBERON:0006240,1.87e-12,41;UBERON:0002791,3.42e-12,32;UBERON:0002619,1.02e-11,22;UBERON:0000073,1.80e-11,53;UBERON:0002616,1.80e-11,53;UBERON:0000955,4.00e-11,68;UBERON:0006238,4.00e-11,68;UBERON:0001049,8.23e-11,56;UBERON:0005068,8.23e-11,56;UBERON:0006241,8.23e-11,56;UBERON:0007135,8.23e-11,56;UBERON:0001950,1.42e-10,20;UBERON:0000956,7.62e-10,25;UBERON:0000203,7.62e-10,25;UBERON:0001017,3.62e-09,81;UBERON:0003056,3.81e-09,61;UBERON:0003075,1.80e-07,82;UBERON:0007284,1.80e-07,82;UBERON:0001016,4.56e-07,89;UBERON:0002346,5.08e-07,86 | |||
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| ||
|short_description=p2@PPP6R1 | |||
}} | }} |
Latest revision as of 00:59, 20 September 2015
Short description: | p2@PPP6R1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PPP6R1_5end |
Coexpression cluster: | NA |
Association with transcript: | 96bp_to_ENST00000412770, NM_014931, uc002qjw.3_5end |
EntrezGene: | PPP6R1 |
HGNC: | 29195 |
UniProt: | Q9UPN7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.37e-13 | 53 |
common lymphoid progenitor | 1.37e-13 | 53 |
lymphoid lineage restricted progenitor cell | 2.13e-13 | 52 |
T cell | 1.76e-08 | 25 |
pro-T cell | 1.76e-08 | 25 |
mature alpha-beta T cell | 5.16e-07 | 18 |
alpha-beta T cell | 5.16e-07 | 18 |
immature T cell | 5.16e-07 | 18 |
mature T cell | 5.16e-07 | 18 |
immature alpha-beta T cell | 5.16e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.48e-13 | 32 |
telencephalon | 9.54e-13 | 34 |
brain grey matter | 1.24e-12 | 34 |
gray matter | 1.24e-12 | 34 |
regional part of forebrain | 1.87e-12 | 41 |
forebrain | 1.87e-12 | 41 |
anterior neural tube | 1.87e-12 | 41 |
future forebrain | 1.87e-12 | 41 |
regional part of telencephalon | 3.42e-12 | 32 |
regional part of cerebral cortex | 1.02e-11 | 22 |
regional part of nervous system | 1.80e-11 | 53 |
regional part of brain | 1.80e-11 | 53 |
brain | 4.00e-11 | 68 |
future brain | 4.00e-11 | 68 |
neural tube | 8.23e-11 | 56 |
neural rod | 8.23e-11 | 56 |
future spinal cord | 8.23e-11 | 56 |
neural keel | 8.23e-11 | 56 |
neocortex | 1.42e-10 | 20 |
cerebral cortex | 7.62e-10 | 25 |
pallium | 7.62e-10 | 25 |
central nervous system | 3.62e-09 | 81 |
pre-chordal neural plate | 3.81e-09 | 61 |
neural plate | 1.80e-07 | 82 |
presumptive neural plate | 1.80e-07 | 82 |
nervous system | 4.56e-07 | 89 |
neurectoderm | 5.08e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.48e-07 | 51 |
immune system cancer | 1.48e-07 | 51 |
leukemia | 6.92e-07 | 39 |