FFCP PHASE1:Hg19::chr19:55690675..55690695,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:55690675..55690695,- to FFCP PHASE1:Hg19::chr19:55690675..55690695,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6861 | |EntrezGene=6861 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11513 | |HGNC=11513 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z300 | |UniProt=B7Z300 | ||
|association_with_transcript=62bp_to_ENST00000543844_5end | |||
|cluster_id=chr19:55690675..55690695,- | |||
|coexpression_cluster_id=C472 | |||
|description=CAGE_peak_5_at_SYT5_5end | |||
|id=chr19:55690675..55690695,- | |||
|ontology_enrichment_celltype=CL:0000623!3.17e-09!3;CL:0000825!3.17e-09!3;CL:0000542!2.23e-08!53;CL:0000051!2.23e-08!53;CL:0000767!5.21e-08!3;CL:0000791!9.40e-08!18;CL:0000789!9.40e-08!18;CL:0002420!9.40e-08!18;CL:0002419!9.40e-08!18;CL:0000790!9.40e-08!18;CL:0000838!1.63e-07!52;CL:0000624!6.93e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000623;1.48e-29;3!CL:0000895;1.21e-10;1!CL:0000791;1.74e-08;18!CL:0000789;1.74e-08;18!CL:0002419;1.74e-08;18!CL:0000625;3.57e-08;11!CL:0000542;5.65e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,1.98e-29,3;CL:0000825,1.98e-29,3;CL:0000838,1.43e-10,52;CL:0000810,1.77e-10,1;CL:0000895,1.77e-10,1;CL:0002436,1.77e-10,1;CL:0002427,1.77e-10,1;CL:0002428,1.77e-10,1;CL:0002429,1.77e-10,1;CL:0002433,1.77e-10,1;CL:0002431,1.77e-10,1;CL:0002432,1.77e-10,1;CL:0000542,2.36e-10,53;CL:0000051,2.36e-10,53;CL:0000791,2.04e-08,18;CL:0000789,2.04e-08,18;CL:0002420,2.04e-08,18;CL:0002419,2.04e-08,18;CL:0000790,2.04e-08,18;CL:0000625,3.95e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002427;1.21e-10;1!CL:0000790;1.74e-08;18!CL:0000051;5.65e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!1.58e-40!34;UBERON:0001869!3.61e-40!32;UBERON:0002791!3.29e-38!33;UBERON:0002020!3.76e-37!34;UBERON:0003528!3.76e-37!34;UBERON:0002619!4.01e-37!22;UBERON:0002780!2.11e-35!41;UBERON:0001890!2.11e-35!41;UBERON:0006240!2.11e-35!41;UBERON:0003080!2.14e-34!42;UBERON:0001950!1.66e-32!20;UBERON:0000956!3.50e-32!25;UBERON:0000203!3.50e-32!25;UBERON:0001049!4.31e-32!57;UBERON:0005068!4.31e-32!57;UBERON:0006241!4.31e-32!57;UBERON:0007135!4.31e-32!57;UBERON:0002616!1.00e-30!59;UBERON:0000955!2.12e-26!69;UBERON:0006238!2.12e-26!69;UBERON:0001017!1.24e-22!82;UBERON:0003056!1.73e-21!61;UBERON:0005743!3.44e-21!86;UBERON:0003075!4.61e-20!86;UBERON:0007284!4.61e-20!86;UBERON:0002346!8.53e-19!90;UBERON:0000073!2.19e-18!94;UBERON:0001016!2.19e-18!94;UBERON:0000200!2.71e-15!6;UBERON:0001871!5.22e-15!7;UBERON:0000153!2.28e-14!129;UBERON:0007811!2.28e-14!129;UBERON:0007023!4.21e-14!115;UBERON:0000349!8.29e-14!5;UBERON:0000033!2.59e-13!123;UBERON:0000369!9.42e-11!4;UBERON:0002435!9.42e-11!4;UBERON:0000204!9.42e-11!4;UBERON:0010082!9.42e-11!4;UBERON:0002420!4.10e-10!9;UBERON:0007245!4.10e-10!9;UBERON:0010009!4.10e-10!9;UBERON:0010011!4.10e-10!9;UBERON:0000454!4.10e-10!9;UBERON:0001872!1.15e-08!5;UBERON:0005383!3.11e-08!3;UBERON:0005382!3.11e-08!3;UBERON:0002771!6.49e-08!3;UBERON:0002308!6.00e-07!9;UBERON:0000125!6.00e-07!9;UBERON:0004121!8.36e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.39e-40;22!UBERON:0001950;8.62e-36;20!UBERON:0000956;2.63e-35;25!UBERON:0000203;2.63e-35;25!UBERON:0001869;4.20e-35;32!UBERON:0001893;5.78e-34;34!UBERON:0002791;4.44e-30;32!UBERON:0003528;9.51e-28;34!UBERON:0002020;9.51e-28;34!UBERON:0002780;1.33e-20;41!UBERON:0001890;1.33e-20;41!UBERON:0000349;6.82e-18;5!UBERON:0000200;5.97e-15;6!UBERON:0001871;4.77e-13;6!UBERON:0000073;7.05e-13;53!UBERON:0002616;7.05e-13;53!UBERON:0002022;3.40e-11;1!UBERON:0007190;3.40e-11;1!UBERON:0002581;5.84e-11;1!UBERON:0002902;5.84e-11;1!UBERON:0001882;5.84e-11;1!UBERON:0009899;5.84e-11;1!UBERON:0005403;5.84e-11;1!UBERON:0000955;4.24e-09;68!UBERON:0001872;1.27e-08;5!UBERON:0002021;1.69e-08;5!UBERON:0001017;1.96e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.65e-40,22;UBERON:0001869,5.64e-40,32;UBERON:0001893,1.37e-37,34;UBERON:0001950,7.48e-36,20;UBERON:0000956,2.23e-35,25;UBERON:0000203,2.23e-35,25;UBERON:0002791,1.88e-33,32;UBERON:0003528,1.89e-31,34;UBERON:0002020,1.89e-31,34;UBERON:0002780,4.97e-31,41;UBERON:0001890,4.97e-31,41;UBERON:0003080,4.97e-31,41;UBERON:0006240,4.97e-31,41;UBERON:0000073,9.85e-24,53;UBERON:0002616,9.85e-24,53;UBERON:0001049,2.18e-22,56;UBERON:0005068,2.18e-22,56;UBERON:0006241,2.18e-22,56;UBERON:0007135,2.18e-22,56;UBERON:0003056,1.97e-20,61;UBERON:0000349,5.91e-18,5;UBERON:0000955,6.94e-18,68;UBERON:0006238,6.94e-18,68;UBERON:0000200,7.39e-15,6;UBERON:0001017,8.65e-15,81;UBERON:0003075,8.65e-15,82;UBERON:0007284,8.65e-15,82;UBERON:0002346,5.06e-14,86;UBERON:0001016,3.71e-13,89;UBERON:0001871,5.39e-13,6;UBERON:0010371,2.72e-11,104;UBERON:0002022,3.08e-11,1;UBERON:0007190,3.41e-11,1;UBERON:0002902,4.58e-11,1;UBERON:0009899,4.58e-11,1;UBERON:0001882,5.05e-11,1;UBERON:0005403,5.05e-11,1;UBERON:0002581,7.46e-11,1;UBERON:0007023,3.01e-10,114;UBERON:0002021,1.32e-08,5;UBERON:0001872,1.43e-08,5;UBERON:0010314,1.65e-08,132 | |||
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| ||
|short_description=p5@SYT5 | |||
}} | }} |
Latest revision as of 00:38, 20 September 2015
Short description: | p5@SYT5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SYT5_5end |
Coexpression cluster: | C472_amygdala_medial_hippocampus_insula_frontal_temporal_paracentral |
Association with transcript: | 62bp_to_ENST00000543844_5end |
EntrezGene: | SYT5 |
HGNC: | 11513 |
UniProt: | B7Z300 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 1.98e-29 | 3 |
pro-NK cell | 1.98e-29 | 3 |
lymphoid lineage restricted progenitor cell | 1.43e-10 | 52 |
CD4-positive, alpha-beta thymocyte | 1.77e-10 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.77e-10 | 1 |
mature CD4 single-positive thymocyte | 1.77e-10 | 1 |
resting double-positive thymocyte | 1.77e-10 | 1 |
double-positive blast | 1.77e-10 | 1 |
CD69-positive double-positive thymocyte | 1.77e-10 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.77e-10 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.77e-10 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.77e-10 | 1 |
lymphocyte | 2.36e-10 | 53 |
common lymphoid progenitor | 2.36e-10 | 53 |
mature alpha-beta T cell | 2.04e-08 | 18 |
alpha-beta T cell | 2.04e-08 | 18 |
immature T cell | 2.04e-08 | 18 |
mature T cell | 2.04e-08 | 18 |
immature alpha-beta T cell | 2.04e-08 | 18 |
CD8-positive, alpha-beta T cell | 3.95e-08 | 11 |