FFCP PHASE1:Hg19::chr19:54876531..54876549,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:54876531..54876549,- to FFCP PHASE1:Hg19::chr19:54876531..54876549,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3903 | |EntrezGene=3903 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6477 | |HGNC=6477 | ||
|TSSclassifier=strong | |||
|UniProt=F2Z3B9,F2Z2I1 | |UniProt=F2Z3B9,F2Z2I1 | ||
|association_with_transcript=0bp_to_ENST00000420483,ENST00000427131,ENST00000436513_5end | |||
|cluster_id=chr19:54876531..54876549,- | |||
|coexpression_cluster_id=C392 | |||
|description=CAGE_peak_1_at_LAIR1_5end | |||
|id=chr19:54876531..54876549,- | |||
|ontology_enrichment_celltype=CL:0000037!1.59e-56!172;CL:0000566!1.59e-56!172;CL:0000988!4.68e-52!182;CL:0002032!6.76e-52!165;CL:0000837!6.76e-52!165;CL:0000763!2.44e-47!112;CL:0000049!2.44e-47!112;CL:0000738!8.00e-47!140;CL:0000766!2.71e-44!76;CL:0002031!1.15e-41!124;CL:0002087!3.86e-41!119;CL:0000839!5.19e-41!70;CL:0000557!1.00e-40!71;CL:0002194!4.74e-38!63;CL:0000576!4.74e-38!63;CL:0000040!4.74e-38!63;CL:0000559!4.74e-38!63;CL:0002009!6.05e-37!65;CL:0002057!9.67e-34!42;CL:0000860!6.23e-30!45;CL:0000134!1.14e-08!358;CL:0002320!9.92e-08!365;CL:0002393!1.25e-07!9;CL:0002397!1.25e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.59e-27;39!CL:0000234;3.59e-27;39!CL:0000860;4.63e-27;33!CL:0002057;4.63e-27;33!CL:0000576;3.31e-26;48!CL:0000766;4.08e-22;69!CL:0000763;1.26e-16;100!CL:0000738;2.82e-11;136!CL:0002087;3.24e-11;104!CL:0000988;2.41e-08;177!CL:0000235;8.26e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.40e-54,168;CL:0000766,7.11e-52,72;CL:0000763,2.05e-51,108;CL:0000049,2.05e-51,108;CL:0002032,1.60e-49,161;CL:0000837,1.60e-49,161;CL:0000839,2.09e-49,66;CL:0000557,4.27e-49,67;CL:0000988,7.26e-49,177;CL:0000738,1.23e-46,136;CL:0002194,2.43e-46,59;CL:0000576,2.43e-46,59;CL:0000040,2.43e-46,59;CL:0000559,2.43e-46,59;CL:0002009,5.55e-45,61;CL:0000473,6.10e-42,48;CL:0000234,6.10e-42,48;CL:0002031,1.08e-41,120;CL:0002087,4.65e-41,115;CL:0000860,1.96e-36,42;CL:0002057,1.96e-36,42;CL:0000134,2.59e-08,354;CL:0002393,3.90e-08,9;CL:0002397,3.90e-08,9;CL:0002320,1.79e-07,361;CL:0000235,8.32e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;2.70e-26;42!CL:0000049;8.25e-15;108 | |||
|ontology_enrichment_disease=DOID:1240!6.88e-10!39;DOID:8692!7.17e-09!31;DOID:2531!1.69e-07!51;DOID:0060083!1.69e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.42e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,9.85e-08,39;DOID:8692,1.90e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.91e-43!102;UBERON:0003061!3.91e-43!102;UBERON:0007023!2.33e-39!115;UBERON:0002193!4.02e-38!112;UBERON:0002371!2.64e-35!80;UBERON:0001474!1.66e-31!86;UBERON:0002405!5.42e-27!115;UBERON:0004765!6.79e-23!101;UBERON:0001434!6.79e-23!101;UBERON:0001049!2.79e-13!57;UBERON:0005068!2.79e-13!57;UBERON:0006241!2.79e-13!57;UBERON:0007135!2.79e-13!57;UBERON:0003080!8.46e-11!42;UBERON:0002780!2.28e-10!41;UBERON:0001890!2.28e-10!41;UBERON:0006240!2.28e-10!41;UBERON:0002616!7.00e-10!59;UBERON:0003081!1.38e-09!216;UBERON:0002020!1.27e-08!34;UBERON:0003528!1.27e-08!34;UBERON:0001893!2.92e-08!34;UBERON:0002791!3.78e-08!33;UBERON:0000955!1.09e-07!69;UBERON:0006238!1.09e-07!69;UBERON:0001017!1.19e-07!82;UBERON:0001869!1.95e-07!32;UBERON:0002204!3.59e-07!167;UBERON:0005743!3.78e-07!86;UBERON:0003075!5.35e-07!86;UBERON:0007284!5.35e-07!86;UBERON:0002384!7.45e-07!375;UBERON:0000178!8.90e-07!15;UBERON:0000179!8.90e-07!15;UBERON:0000463!8.90e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.03e-10;114!UBERON:0002780;2.89e-07;41!UBERON:0001890;2.89e-07;41!UBERON:0000073;7.33e-07;53!UBERON:0002616;7.33e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.49e-48,98;UBERON:0003061,6.49e-48,98;UBERON:0002371,8.00e-43,76;UBERON:0002193,1.11e-42,108;UBERON:0007023,1.31e-40,114;UBERON:0001474,1.83e-38,82;UBERON:0002405,3.65e-38,93;UBERON:0004765,2.74e-32,90;UBERON:0001434,6.72e-27,100;UBERON:0003081,1.46e-13,203;UBERON:0001049,2.00e-12,56;UBERON:0005068,2.00e-12,56;UBERON:0006241,2.00e-12,56;UBERON:0007135,2.00e-12,56;UBERON:0000073,2.98e-11,53;UBERON:0002616,2.98e-11,53;UBERON:0002780,1.38e-09,41;UBERON:0001890,1.38e-09,41;UBERON:0003080,1.38e-09,41;UBERON:0006240,1.38e-09,41;UBERON:0002204,7.74e-09,167;UBERON:0003528,9.67e-08,34;UBERON:0002020,9.67e-08,34;UBERON:0001017,1.62e-07,81;UBERON:0001893,2.19e-07,34;UBERON:0000955,2.46e-07,68;UBERON:0006238,2.46e-07,68;UBERON:0002791,7.17e-07,32;UBERON:0003075,9.54e-07,82;UBERON:0007284,9.54e-07,82 | |||
|phase1_expression=0,7.70761886007539,1.26858963686374,3.00219895059391,2.68176656656373,0,7.59899634504932,1.89515962028049,0.522371256399677,0,0,0,0,0,0,4.70627602516243,0,0,0,0,0,0,0,0,0,0.61130724598361,0.492603536699674,0.629686250509434,36.976242023797,12.666370137208,29.5698795533705,0,0,0,0,0,27.0112404188059,93.0712286333554,107.491823843996,36.4578262802631,181.371534134339,148.343299036693,198.333187078324,91.4554921923462,132.634456234772,163.501657240588,219.180581802061,195.304746810367,182.417052457216,64.4430958801617,105.28205038346,84.6606383001135,205.123680038288,159.434716845205,177.408697438588,113.133646065105,131.813670477939,139.103836871507,310.062982971724,276.961750366669,238.472747923042,64.3210035364096,84.7720544891935,115.50690739436,316.328070105157,206.528221787575,217.987787148451,48.9934897250649,65.1853648025252,67.7629195479964,199.176436366378,152.835218934839,156.332419395797,50.701268714866,43.5838814928339,50.737392213027,29.9917445161142,27.7827251756787,26.6804473917153,32.2064400427611,24.6656679726872,21.3717059904622,8.79981222306614,7.09980194640771,6.22656477704488,10.6682555641627,10.0098996759003,9.77079147922622,3.96626923670917,5.72432252721218,3.98449078376614,4.11066032559657,1.52909291250092,5.28685314316103,28.5859367120583,26.6017925622828,0.393419540227666,0,1.43921049299656,2.00623794468814,0.651844533267181,0.946895611469467,1.94826728407911,2.78526142212934,0.589211814949674,0.664601683750863,0,4.48319619039863,3.77172107923647,4.93313713811028,6.90875044464621,6.37566788617116,1.77943875794473,2.40786745280742,2.09071047609954,3.39928028092699,1.91610246800961,0.68725489096526,1.01207876807801,3.82278497188916,3.25541726928209,0.950452044448374,4.51725357233318,3.32765189001488,6.24653632761729,3.55165878066025,3.28451198768419,1.41124720257313,1.33720097891754,1.15859523106239,0,0,0,0,0,0,0,0,0,0,0.527008714158756,6.54895377488563,0,0,3.57002133020152,5.22389211897802,28.1870876299994,26.7109499221983,30.8877251821269,28.9736851037061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,11.6334079244498,0,0,0,0,0,2.83734705758686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,1.96565443335525,5.90789906681404,4.85609409356116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,202.144161997753,116.53412403934,189.207469593551,0,0,0,0,0,0.383382679165211,3.4486426652716,31.6093878107481,20.7328115540772,70.7628971277281,47.0884276680397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,152.029725801488,167.251611446898,103.308630346686,0,0,0,0,0,0,0.336255431980582,6.69904584686553,3.23441362289276,4.49200626979119,0,1.30139853857622,0,2.01019518401218,0,0.749007023947182,8.97484377612075,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0226584033056,36.2399857375276,23.5867902745612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09629938322967,1.8300481571743,0,0,0,10.5101831880677,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.255679882248303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,9.69681148000825,0,0,0,0,10.1489521846434,7.64637207142375,9.68400218196076,7.38518503919146,11.5181436464134,9.07862635669804,8.10047155857172,8.72437693923697,0,0.962479855263359,0,2.04383492638291,5.04942245417557,5.0510708777374,6.21762463642407,3.39284931435788,28.3427947795903,38.7362656384706,61.353546711891,19.9365996460556,28.9858042372154,15.6679895773023,20.0507581672054,9.81892311249299,28.2635012182511,37.5347455375348,54.0824721866714,44.9992001630052,43.9354292961095,51.4455048152557,41.5454362862652,12.5048381057306,0.278406173895242,0,3.51592382018778,0.66614393599564,2.81974010175699,0,23.441308683503,0,0.222886768554957,0,0.71623345421307,0.296964680832639,0,9.94147647766298,7.31480965334666,0,22.2485230206125,0,9.76315142430242,14.919331438682,0,0,0,0,0,0,68.0391252401739,4.83352687620975,7.18449277040819,0,2.90799823828566,6.77207116581514,1.99613798001194,0,0,10.8749936315219,0,0,0,0,0,0,8.85741385813839,6.75340056302285,4.5774520895125,1.54810963903714,2.06883333267483,2.19385397153973,0,0,3.92446318369365,0.569710279235006,0,0,0,3.82801391678303,0.641183153813036,9.59462596833542,28.6141234948062,8.94787461451641,1.49590513710141,0,0,0,0,0.635746315921515,0,0,0,0,4.97630965539252,9.37650183735395,4.27721101453538,0.296521128680622,0.617819694732514,0.313265848516366,8.76214728748802,7.2231988256891,3.74823113160543,0,0,0,0.394584402849391,3.62972148145992,0.61214552326098,71.8431410375908,0,0,0,0,0,0,0,0,0,0,0,15.0264934688146,0,0,0,0,3.58859361007152,0,2.71176888936639,0,0,1.89932387867636,0,0,7.25740182113799,0,0,0,0,0,0,0,0,0,0,0,13.8096666403252,17.3869831192831,47.2662375847798,0,0,3.90995361781156,4.58320848023367,2.15361907373044,4.19325901047881,4.72148652950228,4.24025769139558,2.48578848200887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| ||
|short_description=p1@LAIR1 | |||
}} | }} |
Latest revision as of 22:09, 19 September 2015
Short description: | p1@LAIR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAIR1_5end |
Coexpression cluster: | C392_Monocytederived_CD14_Macrophage_CD14CD16_Dendritic_Eosinophils_migratory |
Association with transcript: | 0bp_to_ENST00000420483, ENST00000427131, ENST00000436513_5end |
EntrezGene: | LAIR1 |
HGNC: | 6477 |
UniProt: | F2Z3B9F2Z2I1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.40e-54 | 168 |
myeloid leukocyte | 7.11e-52 | 72 |
myeloid cell | 2.05e-51 | 108 |
common myeloid progenitor | 2.05e-51 | 108 |
hematopoietic oligopotent progenitor cell | 1.60e-49 | 161 |
hematopoietic multipotent progenitor cell | 1.60e-49 | 161 |
myeloid lineage restricted progenitor cell | 2.09e-49 | 66 |
granulocyte monocyte progenitor cell | 4.27e-49 | 67 |
hematopoietic cell | 7.26e-49 | 177 |
leukocyte | 1.23e-46 | 136 |
monopoietic cell | 2.43e-46 | 59 |
monocyte | 2.43e-46 | 59 |
monoblast | 2.43e-46 | 59 |
promonocyte | 2.43e-46 | 59 |
macrophage dendritic cell progenitor | 5.55e-45 | 61 |
defensive cell | 6.10e-42 | 48 |
phagocyte | 6.10e-42 | 48 |
hematopoietic lineage restricted progenitor cell | 1.08e-41 | 120 |
nongranular leukocyte | 4.65e-41 | 115 |
classical monocyte | 1.96e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.96e-36 | 42 |
mesenchymal cell | 2.59e-08 | 354 |
intermediate monocyte | 3.90e-08 | 9 |
CD14-positive, CD16-positive monocyte | 3.90e-08 | 9 |
connective tissue cell | 1.79e-07 | 361 |
macrophage | 8.32e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.49e-48 | 98 |
blood island | 6.49e-48 | 98 |
bone marrow | 8.00e-43 | 76 |
hemolymphoid system | 1.11e-42 | 108 |
adult organism | 1.31e-40 | 114 |
bone element | 1.83e-38 | 82 |
immune system | 3.65e-38 | 93 |
skeletal element | 2.74e-32 | 90 |
skeletal system | 6.72e-27 | 100 |
lateral plate mesoderm | 1.46e-13 | 203 |
neural tube | 2.00e-12 | 56 |
neural rod | 2.00e-12 | 56 |
future spinal cord | 2.00e-12 | 56 |
neural keel | 2.00e-12 | 56 |
regional part of nervous system | 2.98e-11 | 53 |
regional part of brain | 2.98e-11 | 53 |
regional part of forebrain | 1.38e-09 | 41 |
forebrain | 1.38e-09 | 41 |
anterior neural tube | 1.38e-09 | 41 |
future forebrain | 1.38e-09 | 41 |
musculoskeletal system | 7.74e-09 | 167 |
brain grey matter | 9.67e-08 | 34 |
gray matter | 9.67e-08 | 34 |
central nervous system | 1.62e-07 | 81 |
telencephalon | 2.19e-07 | 34 |
brain | 2.46e-07 | 68 |
future brain | 2.46e-07 | 68 |
regional part of telencephalon | 7.17e-07 | 32 |
neural plate | 9.54e-07 | 82 |
presumptive neural plate | 9.54e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
leukemia | 9.85e-08 | 39 |
myeloid leukemia | 1.90e-07 | 31 |