FFCP PHASE1:Hg19::chr19:41858640..41858665,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:41858640..41858665,- to FFCP PHASE1:Hg19::chr19:41858640..41858665,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7040 | |EntrezGene=7040 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=11766 | |HGNC=11766 | ||
|TSSclassifier=strong | |||
|UniProt=P01137 | |UniProt=P01137 | ||
|association_with_transcript=283bp_to_BT007245_5end | |||
|cluster_id=chr19:41858640..41858665,- | |||
|coexpression_cluster_id=C1822 | |||
|description=CAGE_peak_6_at_TGFB1_5end | |||
|id=chr19:41858640..41858665,- | |||
|ontology_enrichment_celltype=CL:0002371!4.87e-30!591;CL:0000048!2.35e-29!430;CL:0000723!1.90e-28!436;CL:0000034!2.48e-27!444;CL:0000003!8.02e-27!722;CL:0000144!1.70e-25!625;CL:0000134!5.97e-25!358;CL:0002320!1.77e-24!365;CL:0002057!6.81e-22!42;CL:0000219!6.89e-19!390;CL:0000860!7.22e-19!45;CL:0000548!7.47e-18!679;CL:0000004!7.47e-18!679;CL:0000255!7.47e-18!679;CL:0002009!1.06e-17!65;CL:0000012!1.34e-17!682;CL:0000766!1.47e-17!76;CL:0002194!3.08e-17!63;CL:0000576!3.08e-17!63;CL:0000040!3.08e-17!63;CL:0000559!3.08e-17!63;CL:0000037!3.97e-17!172;CL:0000566!3.97e-17!172;CL:0000988!4.15e-17!182;CL:0000738!1.52e-16!140;CL:0002032!2.18e-16!165;CL:0000837!2.18e-16!165;CL:0002087!2.30e-16!119;CL:0000763!7.85e-16!112;CL:0000049!7.85e-16!112;CL:0000557!1.62e-15!71;CL:0000063!3.35e-15!578;CL:0000839!1.19e-14!70;CL:0002031!1.52e-14!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.62e-20;33!CL:0002057;1.62e-20;33!CL:0000473;3.70e-18;39!CL:0000234;3.70e-18;39!CL:0000576;4.68e-12;48!CL:0000766;3.88e-10;69!CL:0000763;4.59e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.93e-29,427;CL:0000723,7.74e-29,433;CL:0000034,7.72e-28,441;CL:0000134,5.85e-26,354;CL:0000473,5.52e-25,48;CL:0000234,5.52e-25,48;CL:0002320,1.23e-24,361;CL:0000860,2.35e-23,42;CL:0002057,2.35e-23,42;CL:0002009,1.50e-20,61;CL:0000766,4.49e-20,72;CL:0002194,4.72e-20,59;CL:0000576,4.72e-20,59;CL:0000040,4.72e-20,59;CL:0000559,4.72e-20,59;CL:0000219,2.22e-19,386;CL:0000763,4.67e-18,108;CL:0000049,4.67e-18,108;CL:0000557,8.42e-18,67;CL:0000037,1.92e-17,168;CL:0000988,4.86e-17,177;CL:0002032,7.25e-17,161;CL:0000837,7.25e-17,161;CL:0002087,1.21e-16,115;CL:0000839,1.30e-16,66;CL:0000738,1.94e-16,136;CL:0002031,1.73e-14,120 | |||
|ontology_enrichment_development_v019=CL:0002057;2.66e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.99e-22!375;UBERON:0003081!2.53e-20!216;UBERON:0002390!1.12e-13!102;UBERON:0003061!1.12e-13!102;UBERON:0002371!1.27e-13!80;UBERON:0002204!4.18e-13!167;UBERON:0001474!2.05e-12!86;UBERON:0002193!1.01e-10!112;UBERON:0004765!3.07e-10!101;UBERON:0001434!3.07e-10!101;UBERON:0001637!8.07e-09!42;UBERON:0003509!8.07e-09!42;UBERON:0004572!8.07e-09!42;UBERON:0001981!1.03e-07!60;UBERON:0007500!1.03e-07!60;UBERON:0004537!1.03e-07!60;UBERON:0006965!1.03e-07!60;UBERON:0004535!3.77e-07!110;UBERON:0002405!5.18e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.37e-22,371;UBERON:0003081,2.20e-22,203;UBERON:0002371,7.59e-16,76;UBERON:0001474,1.29e-14,82;UBERON:0002390,1.55e-14,98;UBERON:0003061,1.55e-14,98;UBERON:0000926,4.69e-13,315;UBERON:0004120,4.69e-13,315;UBERON:0006603,4.69e-13,315;UBERON:0002204,2.85e-12,167;UBERON:0002193,1.15e-11,108;UBERON:0004765,2.02e-11,90;UBERON:0001434,2.47e-10,100;UBERON:0002405,6.49e-10,93;UBERON:0001637,8.65e-09,42;UBERON:0003509,8.65e-09,42;UBERON:0004572,8.65e-09,42;UBERON:0004535,1.23e-07,109;UBERON:0007500,1.29e-07,59;UBERON:0001981,1.29e-07,59;UBERON:0004537,1.29e-07,59;UBERON:0006965,1.29e-07,59;UBERON:0001009,4.98e-07,112 | |||
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| ||
|short_description=p6@TGFB1 | |||
}} | }} |
Latest revision as of 05:15, 18 September 2015
Short description: | p6@TGFB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TGFB1_5end |
Coexpression cluster: | C1822_CD14_CD8_Neutrophils_Natural_Renal_Endothelial_acute |
Association with transcript: | 283bp_to_BT007245_5end |
EntrezGene: | TGFB1 |
HGNC: | 11766 |
UniProt: | P01137 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.93e-29 | 427 |
somatic stem cell | 7.74e-29 | 433 |
stem cell | 7.72e-28 | 441 |
mesenchymal cell | 5.85e-26 | 354 |
defensive cell | 5.52e-25 | 48 |
phagocyte | 5.52e-25 | 48 |
connective tissue cell | 1.23e-24 | 361 |
classical monocyte | 2.35e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.35e-23 | 42 |
macrophage dendritic cell progenitor | 1.50e-20 | 61 |
myeloid leukocyte | 4.49e-20 | 72 |
monopoietic cell | 4.72e-20 | 59 |
monocyte | 4.72e-20 | 59 |
monoblast | 4.72e-20 | 59 |
promonocyte | 4.72e-20 | 59 |
motile cell | 2.22e-19 | 386 |
myeloid cell | 4.67e-18 | 108 |
common myeloid progenitor | 4.67e-18 | 108 |
granulocyte monocyte progenitor cell | 8.42e-18 | 67 |
hematopoietic stem cell | 1.92e-17 | 168 |
hematopoietic cell | 4.86e-17 | 177 |
hematopoietic oligopotent progenitor cell | 7.25e-17 | 161 |
hematopoietic multipotent progenitor cell | 7.25e-17 | 161 |
nongranular leukocyte | 1.21e-16 | 115 |
myeloid lineage restricted progenitor cell | 1.30e-16 | 66 |
leukocyte | 1.94e-16 | 136 |
hematopoietic lineage restricted progenitor cell | 1.73e-14 | 120 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.37e-22 | 371 |
lateral plate mesoderm | 2.20e-22 | 203 |
bone marrow | 7.59e-16 | 76 |
bone element | 1.29e-14 | 82 |
hematopoietic system | 1.55e-14 | 98 |
blood island | 1.55e-14 | 98 |
mesoderm | 4.69e-13 | 315 |
mesoderm-derived structure | 4.69e-13 | 315 |
presumptive mesoderm | 4.69e-13 | 315 |
musculoskeletal system | 2.85e-12 | 167 |
hemolymphoid system | 1.15e-11 | 108 |
skeletal element | 2.02e-11 | 90 |
skeletal system | 2.47e-10 | 100 |
immune system | 6.49e-10 | 93 |
artery | 8.65e-09 | 42 |
arterial blood vessel | 8.65e-09 | 42 |
arterial system | 8.65e-09 | 42 |
cardiovascular system | 1.23e-07 | 109 |
epithelial tube open at both ends | 1.29e-07 | 59 |
blood vessel | 1.29e-07 | 59 |
blood vasculature | 1.29e-07 | 59 |
vascular cord | 1.29e-07 | 59 |
circulatory system | 4.98e-07 | 112 |