FFCP PHASE1:Hg19::chr19:3984170..3984233,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:3984170..3984233,- to FFCP PHASE1:Hg19::chr19:3984170..3984233,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1938 | |EntrezGene=1938 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=3214 | |HGNC=3214 | ||
|TSSclassifier=strong | |||
|UniProt=P13639 | |UniProt=P13639 | ||
|association_with_transcript=115bp_to_AB527843,AY942181,HQ258667,X51466,Z11692_5end | |||
|cluster_id=chr19:3984170..3984233,- | |||
|coexpression_cluster_id=C1061 | |||
|description=CAGE_peak_2_at_EEF2_5end | |||
|id=chr19:3984170..3984233,- | |||
|ontology_enrichment_celltype=CL:0002371!1.20e-16!591;CL:0000144!2.33e-16!625;CL:0000548!1.05e-12!679;CL:0000004!1.05e-12!679;CL:0000255!1.05e-12!679;CL:0000012!1.94e-12!682;CL:0000055!5.94e-10!180;CL:0000723!6.19e-10!436;CL:0000034!9.30e-10!444;CL:0000048!1.25e-09!430;CL:0000183!9.17e-09!59;CL:0000220!1.15e-07!246;CL:0002321!1.16e-07!248;CL:0000680!1.28e-07!57;CL:0000056!1.28e-07!57;CL:0000355!1.28e-07!57;CL:0000222!1.39e-07!119;CL:0000393!1.73e-07!60;CL:0000211!1.73e-07!60;CL:0000187!1.88e-07!54;CL:0000003!2.83e-07!722;CL:0000192!3.27e-07!42;CL:0000514!3.27e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,6.36e-10,433;CL:0000034,9.60e-10,441;CL:0000048,1.28e-09,427;CL:0002321,6.52e-08,250;CL:0000222,6.56e-08,121;CL:0000680,9.77e-08,58;CL:0000056,9.77e-08,58;CL:0000355,9.77e-08,58;CL:0000393,1.31e-07,61;CL:0000211,1.31e-07,61;CL:0000187,1.43e-07,55;CL:0000192,2.51e-07,43;CL:0000514,2.51e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!5.17e-09!70;UBERON:0000486!6.32e-09!82;UBERON:0000914!8.69e-08!83;UBERON:0002329!8.69e-08!83;UBERON:0003077!8.69e-08!83;UBERON:0003059!8.69e-08!83;UBERON:0007282!8.69e-08!83;UBERON:0009618!8.69e-08!83;UBERON:0007285!8.69e-08!83;UBERON:0001134!9.04e-08!61;UBERON:0002036!9.04e-08!61;UBERON:0003082!9.04e-08!61;UBERON:0001637!1.60e-07!42;UBERON:0003509!1.60e-07!42;UBERON:0004572!1.60e-07!42;UBERON:0002385!2.13e-07!63;UBERON:0001015!2.13e-07!63;UBERON:0000383!2.13e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.49e-10,78;UBERON:0000926,1.69e-09,315;UBERON:0004120,1.69e-09,315;UBERON:0006603,1.69e-09,315;UBERON:0002329,3.90e-09,71;UBERON:0003059,3.90e-09,71;UBERON:0007282,3.90e-09,71;UBERON:0004290,3.90e-09,71;UBERON:0009618,3.90e-09,71;UBERON:0000486,4.77e-09,83;UBERON:0007524,5.02e-09,73;UBERON:0003077,1.09e-08,72;UBERON:0007285,1.09e-08,72;UBERON:0001134,6.87e-08,62;UBERON:0002036,6.87e-08,62;UBERON:0003082,6.87e-08,62;UBERON:0001637,1.60e-07,42;UBERON:0003509,1.60e-07,42;UBERON:0004572,1.60e-07,42;UBERON:0002385,1.62e-07,64;UBERON:0001015,1.62e-07,64;UBERON:0000383,1.62e-07,64;UBERON:0002049,7.87e-07,78;UBERON:0007798,7.87e-07,78 | |||
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| ||
|short_description=p2@EEF2 | |||
}} | }} |
Latest revision as of 22:18, 17 September 2015
Short description: | p2@EEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_EEF2_5end |
Coexpression cluster: | C1061_skeletal_Bronchial_pancreas_iPS_diffuse_Mesenchymal_Smooth |
Association with transcript: | 115bp_to_AB527843, AY942181, HQ258667, X51466, Z11692_5end |
EntrezGene: | EEF2 |
HGNC: | 3214 |
UniProt: | P13639 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 6.36e-10 | 433 |
stem cell | 9.60e-10 | 441 |
multi fate stem cell | 1.28e-09 | 427 |
embryonic cell | 6.52e-08 | 250 |
mesodermal cell | 6.56e-08 | 121 |
muscle precursor cell | 9.77e-08 | 58 |
myoblast | 9.77e-08 | 58 |
multi-potent skeletal muscle stem cell | 9.77e-08 | 58 |
electrically responsive cell | 1.31e-07 | 61 |
electrically active cell | 1.31e-07 | 61 |
muscle cell | 1.43e-07 | 55 |
smooth muscle cell | 2.51e-07 | 43 |
smooth muscle myoblast | 2.51e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.49e-10 | 78 |
mesoderm | 1.69e-09 | 315 |
mesoderm-derived structure | 1.69e-09 | 315 |
presumptive mesoderm | 1.69e-09 | 315 |
somite | 3.90e-09 | 71 |
presomitic mesoderm | 3.90e-09 | 71 |
presumptive segmental plate | 3.90e-09 | 71 |
dermomyotome | 3.90e-09 | 71 |
trunk paraxial mesoderm | 3.90e-09 | 71 |
multilaminar epithelium | 4.77e-09 | 83 |
dense mesenchyme tissue | 5.02e-09 | 73 |
paraxial mesoderm | 1.09e-08 | 72 |
presumptive paraxial mesoderm | 1.09e-08 | 72 |
skeletal muscle tissue | 6.87e-08 | 62 |
striated muscle tissue | 6.87e-08 | 62 |
myotome | 6.87e-08 | 62 |
artery | 1.60e-07 | 42 |
arterial blood vessel | 1.60e-07 | 42 |
arterial system | 1.60e-07 | 42 |
muscle tissue | 1.62e-07 | 64 |
musculature | 1.62e-07 | 64 |
musculature of body | 1.62e-07 | 64 |
vasculature | 7.87e-07 | 78 |
vascular system | 7.87e-07 | 78 |