FFCP PHASE1:Hg19::chr19:3786253..3786322,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:3786253..3786322,- to FFCP PHASE1:Hg19::chr19:3786253..3786322,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4145 | |EntrezGene=4145 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6906 | |HGNC=6906 | ||
|TSSclassifier=strong | |||
|UniProt=F1T0G6,P42679,Q9NST8 | |UniProt=F1T0G6,P42679,Q9NST8 | ||
|association_with_transcript=92bp_to_ENST00000310132,ENST00000395040,NM_139354,NM_139355,uc002lyt.2,uc002lyu.2,uc010dtq.2_5end | |||
|cluster_id=chr19:3786253..3786322,- | |||
|description=CAGE_peak_1_at_MATK_5end | |||
|id=chr19:3786253..3786322,- | |||
|ontology_enrichment_celltype=CL:0000037!4.04e-35!172;CL:0000566!4.04e-35!172;CL:0002032!1.66e-32!165;CL:0000837!1.66e-32!165;CL:0000988!1.06e-30!182;CL:0000763!9.22e-24!112;CL:0000049!9.22e-24!112;CL:0000738!2.09e-21!140;CL:0002031!7.96e-18!124;CL:0002087!3.83e-17!119;CL:0000766!1.61e-12!76;CL:0000791!6.00e-11!18;CL:0000789!6.00e-11!18;CL:0002420!6.00e-11!18;CL:0002419!6.00e-11!18;CL:0000790!6.00e-11!18;CL:0000557!1.02e-10!71;CL:0000839!5.16e-10!70;CL:0000625!1.38e-09!11;CL:0000084!7.69e-09!25;CL:0000827!7.69e-09!25;CL:0000838!1.28e-08!52;CL:0002194!3.12e-08!63;CL:0000576!3.12e-08!63;CL:0000040!3.12e-08!63;CL:0000559!3.12e-08!63;CL:0000542!3.31e-08!53;CL:0000051!3.31e-08!53;CL:0002009!4.75e-08!65 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.95e-13;18!CL:0000789;1.95e-13;18!CL:0002419;1.95e-13;18!CL:0000625;1.08e-11;11!CL:0000084;1.30e-10;25!CL:0000763;4.14e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.70e-34,168;CL:0002032,1.39e-30,161;CL:0000837,1.39e-30,161;CL:0000988,4.14e-30,177;CL:0000763,2.18e-20,108;CL:0000049,2.18e-20,108;CL:0000738,3.27e-18,136;CL:0002031,3.43e-15,120;CL:0002087,1.24e-14,115;CL:0000791,1.21e-13,18;CL:0000789,1.21e-13,18;CL:0002420,1.21e-13,18;CL:0002419,1.21e-13,18;CL:0000790,1.21e-13,18;CL:0000625,1.08e-11,11;CL:0000084,9.19e-11,25;CL:0000827,9.19e-11,25;CL:0000838,6.30e-10,52;CL:0000542,1.52e-09,53;CL:0000051,1.52e-09,53;CL:0000766,1.58e-08,72;CL:0000557,1.57e-07,67 | |||
|ontology_enrichment_development_v019=CL:0000790;1.95e-13;18 | |||
|ontology_enrichment_disease=DOID:8692!4.79e-16!31;DOID:1240!1.31e-14!39;DOID:2531!6.84e-08!51;DOID:0060083!6.84e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.40e-20;31!DOID:1240;5.64e-14;39!DOID:2531;3.21e-08;51!DOID:0060083;3.21e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.60e-20,31;DOID:1240,2.01e-18,39;DOID:2531,2.82e-11,51;DOID:0060083,2.82e-11,51 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.61e-19!115;UBERON:0002390!2.23e-14!102;UBERON:0003061!2.23e-14!102;UBERON:0002193!3.80e-12!112;UBERON:0002619!7.66e-11!22;UBERON:0001950!6.55e-10!20;UBERON:0001893!4.53e-09!34;UBERON:0002020!6.08e-09!34;UBERON:0003528!6.08e-09!34;UBERON:0001869!7.70e-09!32;UBERON:0002780!7.72e-09!41;UBERON:0001890!7.72e-09!41;UBERON:0006240!7.72e-09!41;UBERON:0002791!1.16e-08!33;UBERON:0000956!1.55e-08!25;UBERON:0000203!1.55e-08!25;UBERON:0001474!1.64e-08!86;UBERON:0001049!1.67e-08!57;UBERON:0005068!1.67e-08!57;UBERON:0006241!1.67e-08!57;UBERON:0007135!1.67e-08!57;UBERON:0002371!2.25e-08!80;UBERON:0003080!2.33e-08!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.72e-13;22!UBERON:0001950;6.59e-12;20!UBERON:0000956;1.08e-10;25!UBERON:0000203;1.08e-10;25!UBERON:0001869;1.20e-09;32!UBERON:0001893;4.25e-09;34!UBERON:0003528;6.27e-09;34!UBERON:0002020;6.27e-09;34!UBERON:0002791;7.76e-09;32!UBERON:0000178;5.11e-08;15!UBERON:0000179;5.11e-08;15!UBERON:0000463;5.11e-08;15!UBERON:0002780;2.91e-07;41!UBERON:0001890;2.91e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,2.81e-13,22;UBERON:0002390,4.34e-13,98;UBERON:0003061,4.34e-13,98;UBERON:0001950,4.22e-12,20;UBERON:0002193,1.53e-11,108;UBERON:0007023,4.59e-11,114;UBERON:0000956,6.99e-11,25;UBERON:0000203,6.99e-11,25;UBERON:0001869,7.01e-11,32;UBERON:0001893,1.54e-10,34;UBERON:0003528,2.21e-10,34;UBERON:0002020,2.21e-10,34;UBERON:0002791,8.26e-10,32;UBERON:0002780,2.20e-09,41;UBERON:0001890,2.20e-09,41;UBERON:0003080,2.20e-09,41;UBERON:0006240,2.20e-09,41;UBERON:0000073,4.20e-08,53;UBERON:0002616,4.20e-08,53;UBERON:0000178,5.42e-08,15;UBERON:0000179,5.42e-08,15;UBERON:0000463,5.42e-08,15;UBERON:0001049,7.23e-08,56;UBERON:0005068,7.23e-08,56;UBERON:0006241,7.23e-08,56;UBERON:0007135,7.23e-08,56;UBERON:0001017,4.55e-07,81;UBERON:0002405,5.84e-07,93 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0,31.8625064247612,46.4433571697627,21.3646250176185,0,0,0,0,0,63.7112953356618,15.5118714388926,9.42558903109666,13.0206522429511,2.68698569087909,5.50619232232265,2.06060454107349,0.436194716338694,0,0.727752183563449,0.464858073811369,2.87817521615278,0.929119112685311,2.3015391385772,1.2808035326455,0.47296445977717,1.37898272294647,1.29096936716765,0,1.50593871634084,1.09162460023138,0.898893937780338,0.918251677112708,0,2.55734850319616,0.329851300186716,0.797854630486527,0,0.870627715885752,1.13477044938228,0,2.26123798731069,1.5644487552606,0.65156653411535,2.42159801053347,0,0,0.422510572623884,0,0.209658645508376,0.22465726229299,0.750884464207532,0,0,0,0,1.75996244461323,2.18455444504853,0,3.41384178053206,0.800791974072025,2.29900975981793,1.32208974556972,0,3.41527781465669,3.52342313622563,3.44045905312706,21.1474125726441,19.6177997043538,28.7088652404834,1.7703879310245,6.28817220398664,4.5232329779892,0.501559486172034,1.95553359980154,1.89379122293893,1.94826728407911,0.891283655081389,0,0.221533894583621,0,0.768547918354051,0.780356085359269,6.9063919933544,15.4756009960075,6.66547097190621,0.593146252648242,1.07016331235885,2.09071047609954,3.62589896632212,7.66440987203842,8.59068613706575,5.31341353240956,29.9451489464651,37.1117568698159,27.5631092890028,14.3046363123884,14.974433505067,27.4847598415161,31.2545972698102,42.6986558398944,56.8531015893745,68.4646901205779,37.9439938172933,0,0,0.12786256184353,0,0,0,0,0,0,0,0.263504357079378,2.48860243445654,0,0,23.3674123431372,28.5572769170798,43.0783792081123,3.10037811596945,1.14398982156026,1.85728750664782,0,0,0,0,0,0,0,0,0,0,0,0,0.732186172644509,0,0,0,0,0,0,0,0,2.63560834872127,7.75560528296651,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0.298897361103602,0,0,0.280901613404497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3435546700524,6.89154795271723,6.62305474356255,4.35376431064556,9.33587148239825,4.74470566798579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94848165003288,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,3.43394464837949,7.63272718870932,68.5632496857966,35.3742166247173,0,0,0,0,0,0,9.36060152002293,10.125569911521,15.3422805500171,8.35895729818376,15.4015768780184,2.22242630022592,1.14596527667483,0,0,0.205654985406647,1.50171528921959,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,15.8110914833548,3.51579964002488,25.3000727379638,0,0,0,0,0,0,22.753284230686,86.496503728646,78.2728096740048,73.4122167520161,0,0,0,0.167516265334349,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4737618286021,17.472850266308,27.0020721242714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0.0770153371044148,0.784349769176855,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0,0.512900250232778,0,0,1.64865618636356,0,0.082509499920588,0,0,0,0,0,0,0,0,0.145016693914229,0.511359764496605,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0982349809975,0,0,0,0,0,0.422215270595328,0,0,0,0,2.68120910214315,0,0.941438007767792,0,0,0,0,7.10426652925037,9.1756464857085,19.9376515510957,16.4379925065874,12.752230465672,10.3755729790835,6.48037724685738,20.621254583651,1.6023610669121,9.62479855263359,0,0,0,0,0.956557636372934,73.6447880587093,77.1766641633438,98.0048688011578,40.902364474594,25.8333403864382,37.4304873614435,70.1925933063144,117.798204232332,38.9371088943688,0,35.5167484656244,36.6227764413681,55.3043605056781,8.29550063632837,6.93395934466489,7.8419096604597,0,0,2.46174797895425,26.5046564906463,27.3119013758212,11.278960407028,0,15.8228833613646,1.09224469574562,0,0,0,0.890894042497916,0,1.9882952955326,4.22008249231538,0,0,0.63337622438398,0.796991953004279,4.97311047956066,0,0,8.12359716043058,0,0,0,50.1340922822334,0.789147245095469,26.3431401581634,0,7.75466196876175,3.52518773015035,7.98455192004777,2.08342208868187,0,0,0,0,0,0,1.16641845353302,0.520874984799877,0,2.53252521113357,0,0.221158519862449,0.886642856860642,6.58156191461918,0,1.25481369850743,0.384751292518985,0,0,0,0.217294743844016,1.27600463892768,0.366390373607449,3.19820865611181,12.2631957834884,32.9658538429552,3.65665700180344,2.93274358802335,3.92125068635479,3.5242533264927,2.84630599086278,17.9598334247828,0,0,0,0,0.995261931078505,1.14994833854341,1.83309043480088,0,0,0,1.14581926067151,0.802577647298789,1.40558667435203,0,0.978323094660449,2.67058417487502,0,6.04953580243319,3.36680037793539,1.32691817219825,1.65355761355942,0.207376382794494,0.664653872707185,1.323967823502,0.313932918407225,1.19472429772959,0,0,0,0,0,0.698906672968121,0,1.74161396320353,2.33885814675794,2.46346371159628,0.581934098930517,2.38291542067051,0.677942222341597,0,0,4.05189094117624,0.195551382734803,0,2.56143593687223,0.19980960958213,4.46680293177729,1.25990255782507,0,0,0,0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| 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| ||
|short_description=p1@MATK | |||
}} | }} |
Latest revision as of 18:00, 17 September 2015
Short description: | p1@MATK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MATK_5end |
Coexpression cluster: | NA |
Association with transcript: | 92bp_to_ENST00000310132, ENST00000395040, NM_139354, NM_139355, uc002lyt.2, uc002lyu.2, uc010dtq.2_5end |
EntrezGene: | MATK |
HGNC: | 6906 |
UniProt: | F1T0G6P42679Q9NST8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 9.70e-34 | 168 |
hematopoietic oligopotent progenitor cell | 1.39e-30 | 161 |
hematopoietic multipotent progenitor cell | 1.39e-30 | 161 |
hematopoietic cell | 4.14e-30 | 177 |
myeloid cell | 2.18e-20 | 108 |
common myeloid progenitor | 2.18e-20 | 108 |
leukocyte | 3.27e-18 | 136 |
hematopoietic lineage restricted progenitor cell | 3.43e-15 | 120 |
nongranular leukocyte | 1.24e-14 | 115 |
mature alpha-beta T cell | 1.21e-13 | 18 |
alpha-beta T cell | 1.21e-13 | 18 |
immature T cell | 1.21e-13 | 18 |
mature T cell | 1.21e-13 | 18 |
immature alpha-beta T cell | 1.21e-13 | 18 |
CD8-positive, alpha-beta T cell | 1.08e-11 | 11 |
T cell | 9.19e-11 | 25 |
pro-T cell | 9.19e-11 | 25 |
lymphoid lineage restricted progenitor cell | 6.30e-10 | 52 |
lymphocyte | 1.52e-09 | 53 |
common lymphoid progenitor | 1.52e-09 | 53 |
myeloid leukocyte | 1.58e-08 | 72 |
granulocyte monocyte progenitor cell | 1.57e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 2.81e-13 | 22 |
hematopoietic system | 4.34e-13 | 98 |
blood island | 4.34e-13 | 98 |
neocortex | 4.22e-12 | 20 |
hemolymphoid system | 1.53e-11 | 108 |
adult organism | 4.59e-11 | 114 |
cerebral cortex | 6.99e-11 | 25 |
pallium | 6.99e-11 | 25 |
cerebral hemisphere | 7.01e-11 | 32 |
telencephalon | 1.54e-10 | 34 |
brain grey matter | 2.21e-10 | 34 |
gray matter | 2.21e-10 | 34 |
regional part of telencephalon | 8.26e-10 | 32 |
regional part of forebrain | 2.20e-09 | 41 |
forebrain | 2.20e-09 | 41 |
anterior neural tube | 2.20e-09 | 41 |
future forebrain | 2.20e-09 | 41 |
regional part of nervous system | 4.20e-08 | 53 |
regional part of brain | 4.20e-08 | 53 |
blood | 5.42e-08 | 15 |
haemolymphatic fluid | 5.42e-08 | 15 |
organism substance | 5.42e-08 | 15 |
neural tube | 7.23e-08 | 56 |
neural rod | 7.23e-08 | 56 |
future spinal cord | 7.23e-08 | 56 |
neural keel | 7.23e-08 | 56 |
central nervous system | 4.55e-07 | 81 |
immune system | 5.84e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.60e-20 | 31 |
leukemia | 2.01e-18 | 39 |
hematologic cancer | 2.82e-11 | 51 |
immune system cancer | 2.82e-11 | 51 |