FFCP PHASE1:Hg19::chr17:76850613..76850641,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:76850613..76850641,- to FFCP PHASE1:Hg19::chr17:76850613..76850641,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7077 | |EntrezGene=7077 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11821 | |HGNC=11821 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=60bp_to_BC010410_5end | |||
|cluster_id=chr17:76850613..76850641,- | |||
|coexpression_cluster_id=C706 | |||
|description=CAGE_peak_5_at_TIMP2_5end | |||
|id=chr17:76850613..76850641,- | |||
|ontology_enrichment_celltype=CL:0000055!6.56e-31!180;CL:0000057!4.42e-16!75;CL:0000222!2.02e-12!119;CL:0000183!8.90e-12!59;CL:0000680!4.24e-11!57;CL:0000056!4.24e-11!57;CL:0000355!4.24e-11!57;CL:0000192!1.65e-10!42;CL:0000514!1.65e-10!42;CL:0000187!2.50e-10!54;CL:0000393!3.90e-09!60;CL:0000211!3.90e-09!60;CL:0000359!1.15e-07!32;CL:0000048!2.42e-07!430;CL:0000144!2.43e-07!625;CL:0000499!3.01e-07!27;CL:0002371!8.99e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.86e-10;55!CL:0000499;1.44e-08;28!CL:0000048;1.47e-08;58!CL:0000192;4.18e-08;43!CL:0000723;5.25e-08;61!CL:0000359;6.49e-08;32!CL:0002320;4.23e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.30e-16,76;CL:0000048,2.01e-14,427;CL:0000723,2.08e-13,433;CL:0000222,1.39e-12,121;CL:0000034,3.97e-12,441;CL:0000680,1.18e-11,58;CL:0000056,1.18e-11,58;CL:0000355,1.18e-11,58;CL:0000192,1.35e-11,43;CL:0000514,1.35e-11,43;CL:0000187,1.01e-10,55;CL:0000393,1.35e-09,61;CL:0000211,1.35e-09,61;CL:0000499,2.81e-08,28;CL:0000359,5.48e-08,32;CL:0002320,5.23e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000514;4.18e-08;43!CL:0000355;7.84e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.64e-10!143;UBERON:0000914!1.82e-10!83;UBERON:0002329!1.82e-10!83;UBERON:0003077!1.82e-10!83;UBERON:0003059!1.82e-10!83;UBERON:0007282!1.82e-10!83;UBERON:0009618!1.82e-10!83;UBERON:0007285!1.82e-10!83;UBERON:0004290!2.26e-10!70;UBERON:0001134!9.70e-10!61;UBERON:0002036!9.70e-10!61;UBERON:0003082!9.70e-10!61;UBERON:0002385!1.84e-09!63;UBERON:0001015!1.84e-09!63;UBERON:0000383!1.84e-09!63;UBERON:0000468!1.06e-08!659;UBERON:0004872!2.24e-08!84;UBERON:0000486!1.10e-07!82;UBERON:0002049!1.49e-07!79;UBERON:0007798!1.49e-07!79;UBERON:0003914!1.64e-07!118;UBERON:0000467!1.82e-07!625;UBERON:0000480!2.18e-07!626;UBERON:0004535!9.82e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.74e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.51e-11,78;UBERON:0000926,6.22e-11,315;UBERON:0004120,6.22e-11,315;UBERON:0006603,6.22e-11,315;UBERON:0001134,1.57e-10,62;UBERON:0002036,1.57e-10,62;UBERON:0003082,1.57e-10,62;UBERON:0007524,2.95e-10,73;UBERON:0002385,3.21e-10,64;UBERON:0001015,3.21e-10,64;UBERON:0000383,3.21e-10,64;UBERON:0002329,3.73e-10,71;UBERON:0003059,3.73e-10,71;UBERON:0007282,3.73e-10,71;UBERON:0004290,3.73e-10,71;UBERON:0009618,3.73e-10,71;UBERON:0003077,8.55e-10,72;UBERON:0007285,8.55e-10,72;UBERON:0005256,1.87e-09,122;UBERON:0003104,1.19e-08,160;UBERON:0009142,1.19e-08,160;UBERON:0000486,6.41e-08,83;UBERON:0004872,1.43e-07,83;UBERON:0002384,9.86e-07,371 | |||
|phase1_expression=4.90531624030503,8.77812147953031,4.08767771878316,29.0212565224078,11.6209884551095,20.9361245784089,5.06599756336621,3.79031924056099,4.17897005119742,0.982935746006035,1.39560233594486,0.873765488520689,1.31883489114227,2.72285976512103,1.32558950291166,8.74022690387308,5.42425075221579,2.92124036154949,5.85519358548608,1.47745269692145,3.4680117511523,2.19418305034661,0.572471974262113,1.23186982565596,1.88313959392204,0,0,0,0,0.383829398097213,0.464448369948228,0,0,0,0,0,0.293600439334847,0.553995408531877,0,0.217010870715852,0.447830948479849,1.29557466407592,0,1.01778767145695,0.377875943688809,0.970336244751265,1.16214518452842,0,0.619412741790207,0.575384784644301,0.512321413058201,0.236482229888585,0,0,0,0.188242339542605,0.545812300115692,0.449446968890169,0.918251677112708,0.641858054152187,1.91801137739712,0.329851300186716,0.398927315243264,0.852449501065388,1.45104619314292,0,0,0.502497330513487,0.521482918420201,0.217188844705117,0,0,0,0,0,0,0.44931452458598,0.300353785683013,0.32145117339416,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.01210257911091,0.255725123687061,2.53007406669196,2.50668955317945,7.38717246700201,1.5905718941022,4.37971383272372,1.03988298880475,0.886917589850256,0.966182642624386,1.11332214173056,0,0,2.59637914923747,1.56716763569341,2.52620124985844,0,0,0,0.198762407366705,1.72046919021225,0.347140501607594,0,0.838998872419812,0.550236083880135,0.208994966536811,1.03366703667732,1.06729878806013,1.00416183829401,1.61131726843659,1.52054421143703,1.22031028774085,1.10298924103761,0,0.535798369704479,0.22452937262617,0.225222960966644,0,0,0.732806975721629,1.31780417436063,0,0,2.98183171017191,3.54565432660823,0.264818361626438,6.02356903572509,2.12801029319014,2.80338800071154,5.33744978648525,2.96001058100592,1.55605517699883,1.21239604862719,1.63461903113459,1.96764655938411,2.88087962239999,0.937285727335186,1.24864030732128,0.570471821544449,3.88566569434683,0.822041490506354,0.809364721840658,0.98315564691574,0.816616685019573,1.96534907698829,1.44656093646072,3.56400857184616,4.69807165629258,0.910161361938026,1.43723628363248,1.85169725349473,1.25118519871964,0.277064115484183,1.75591048352335,3.37136575378922,2.40380894250555,2.04177929688038,3.40840307808838,4.27114777637135,2.96704661623387,5.40163972951924,2.47326070172253,3.60696756063881,3.90845398296339,3.37552664482532,2.72823614451356,2.27190396819703,1.74894807420369,3.23292113637624,5.32514388774922,2.21654616100809,1.86516651541536,0,0,0,0,0,0,0.10366105501537,0.504641701751257,0,4.69348596989448,12.2215778256648,0,13.4666699129274,8.66255378003503,0.828147600278907,0.337169380156203,0.723033089650446,0.330881918197182,0.435758888184812,0.237270619111097,0.943819157121151,1.56977172100277,1.53898862778556,2.21446636387394,1.40241773803446,2.4694440679884,4.41026134156626,0,0,0,0,0.860919069801795,0.343135620597051,0.109750285408626,0,0,0,0.977424915930974,1.03993478527958,0,0.927443239800615,0.939269553886573,2.16549671641611,1.85194205030644,2.47330397904978,0.790204397959275,0,1.96973604869918,1.17002132569619,1.78357394746474,0,0,0,0.179117045405697,0,0,0,0,0,0,0,2.98440103173194,4.96584953225761,7.03304683260282,5.13217338068116,5.65551209868279,9.91132090884928,4.85904935471983,0.784917590417525,0.43596006883328,1.0267360014933,2.06834745212444,3.57656445851882,0.845302752556,5.58470044828228,3.12022310734098,1.54324424557285,0,1.0656887160644,2.85955987316295,4.88359444852299,0,0.325736184293735,1.77695974371273,1.58390374586686,3.01439377059586,0,4.99864955910285,3.64871341923571,4.52031382288914,8.43335757932127,1.91699884393266,2.29723871668228,0,3.04040744001916,3.49309748335652,1.25342674267927,0,0.197030760201927,0,0,0,0,2.31986643833309,0.502548796003046,1.91381625495949,2.24702107184155,5.9832291840805,0.828831026872071,2.69921281782108,5.50187573165645,3.52644530809656,4.57535895367776,10.3488813502354,2.99634588564476,2.57711112983969,1.20378439891088,2.27407504055985,4.1389228517002,1.32845119707087,1.47495334833363,5.64743494042539,3.52442083432933,5.14715135716284,0,0,0.853820462427555,0,4.99306318531491,1.81434175997808,8.68377327365719,1.84154367945675,7.85848264412606,6.15067916427365,6.14048698880044,7.72098821489316,14.8418066444991,1.3878872442239,0.532685175939381,1.56041596426237,5.71179872101983,2.5566283261191,0.241718899183244,0,0.0920809889358963,2.64073230778596,2.1850940160806,3.93373244878272,1.35359883872224,0.693138033939733,2.35304930753057,2.92278449306521,0.844413031143006,6.8240030442538,1.19065593693561,0.215915916102139,3.08454505380579,1.62567862526312,4.51520796469368,0.254876273045038,1.66215201785745,1.11937377361089,0,0,2.3080511260475,3.28014645699706,3.57916234130733,0.515205058238611,0.640986253728404,0.660075999364704,0.574265537996172,0,4.82051789532479,1.54673149267395,0.462145851343933,1.535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|phase1_expression=4.90531624030503,8.77812147953031,4.08767771878316,29.0212565224078,11.6209884551095,20.9361245784089,5.06599756336621,3.79031924056099,4.17897005119742,0.982935746006035,1.39560233594486,0.873765488520689,1.31883489114227,2.72285976512103,1.32558950291166,8.74022690387308,5.42425075221579,2.92124036154949,5.85519358548608,1.47745269692145,3.4680117511523,2.19418305034661,0.572471974262113,1.23186982565596,1.88313959392204,0,0,0,0,0.383829398097213,0.464448369948228,0,0,0,0,0,0.293600439334847,0.553995408531877,0,0.217010870715852,0.447830948479849,1.29557466407592,0,1.01778767145695,0.377875943688809,0.970336244751265,1.16214518452842,0,0.619412741790207,0.575384784644301,0.512321413058201,0.236482229888585,0,0,0,0.188242339542605,0.545812300115692,0.449446968890169,0.918251677112708,0.641858054152187,1.91801137739712,0.329851300186716,0.398927315243264,0.852449501065388,1.45104619314292,0,0,0.502497330513487,0.521482918420201,0.217188844705117,0,0,0,0,0,0,0.44931452458598,0.300353785683013,0.32145117339416,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.01210257911091,0.255725123687061,2.53007406669196,2.50668955317945,7.38717246700201,1.5905718941022,4.37971383272372,1.03988298880475,0.886917589850256,0.966182642624386,1.11332214173056,0,0,2.59637914923747,1.56716763569341,2.52620124985844,0,0,0,0.198762407366705,1.72046919021225,0.347140501607594,0,0.838998872419812,0.550236083880135,0.208994966536811,1.03366703667732,1.06729878806013,1.00416183829401,1.61131726843659,1.52054421143703,1.22031028774085,1.10298924103761,0,0.535798369704479,0.22452937262617,0.225222960966644,0,0,0.732806975721629,1.31780417436063,0,0,2.98183171017191,3.54565432660823,0.264818361626438,6.02356903572509,2.12801029319014,2.80338800071154,5.33744978648525,2.96001058100592,1.55605517699883,1.21239604862719,1.63461903113459,1.96764655938411,2.88087962239999,0.937285727335186,1.24864030732128,0.570471821544449,3.88566569434683,0.822041490506354,0.809364721840658,0.98315564691574,0.816616685019573,1.96534907698829,1.44656093646072,3.56400857184616,4.69807165629258,0.910161361938026,1.43723628363248,1.85169725349473,1.25118519871964,0.277064115484183,1.75591048352335,3.37136575378922,2.40380894250555,2.04177929688038,3.40840307808838,4.27114777637135,2.96704661623387,5.40163972951924,2.47326070172253,3.60696756063881,3.90845398296339,3.37552664482532,2.72823614451356,2.27190396819703,1.74894807420369,3.23292113637624,5.32514388774922,2.21654616100809,1.86516651541536,0,0,0,0,0,0,0.10366105501537,0.504641701751257,0,4.69348596989448,12.2215778256648,0,13.4666699129274,8.66255378003503,0.828147600278907,0.337169380156203,0.723033089650446,0.330881918197182,0.435758888184812,0.237270619111097,0.943819157121151,1.56977172100277,1.53898862778556,2.21446636387394,1.40241773803446,2.4694440679884,4.41026134156626,0,0,0,0,0.860919069801795,0.343135620597051,0.109750285408626,0,0,0,0.977424915930974,1.03993478527958,0,0.927443239800615,0.939269553886573,2.16549671641611,1.85194205030644,2.47330397904978,0.790204397959275,0,1.96973604869918,1.17002132569619,1.78357394746474,0,0,0,0.179117045405697,0,0,0,0,0,0,0,2.98440103173194,4.96584953225761,7.03304683260282,5.13217338068116,5.65551209868279,9.91132090884928,4.85904935471983,0.784917590417525,0.43596006883328,1.0267360014933,2.06834745212444,3.57656445851882,0.845302752556,5.58470044828228,3.12022310734098,1.54324424557285,0,1.0656887160644,2.85955987316295,4.88359444852299,0,0.325736184293735,1.77695974371273,1.58390374586686,3.01439377059586,0,4.99864955910285,3.64871341923571,4.52031382288914,8.43335757932127,1.91699884393266,2.29723871668228,0,3.04040744001916,3.49309748335652,1.25342674267927,0,0.197030760201927,0,0,0,0,2.31986643833309,0.502548796003046,1.91381625495949,2.24702107184155,5.9832291840805,0.828831026872071,2.69921281782108,5.50187573165645,3.52644530809656,4.57535895367776,10.3488813502354,2.99634588564476,2.57711112983969,1.20378439891088,2.27407504055985,4.1389228517002,1.32845119707087,1.47495334833363,5.64743494042539,3.52442083432933,5.14715135716284,0,0,0.853820462427555,0,4.99306318531491,1.81434175997808,8.68377327365719,1.84154367945675,7.85848264412606,6.15067916427365,6.14048698880044,7.72098821489316,14.8418066444991,1.3878872442239,0.532685175939381,1.56041596426237,5.71179872101983,2.5566283261191,0.241718899183244,0,0.0920809889358963,2.64073230778596,2.1850940160806,3.93373244878272,1.35359883872224,0.693138033939733,2.35304930753057,2.92278449306521,0.844413031143006,6.8240030442538,1.19065593693561,0.215915916102139,3.08454505380579,1.62567862526312,4.51520796469368,0.254876273045038,1.66215201785745,1.11937377361089,0,0,2.3080511260475,3.28014645699706,3.57916234130733,0.515205058238611,0.640986253728404,0.660075999364704,0.574265537996172,0,4.82051789532479,1.54673149267395,0.462145851343933,1.535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| ||
|short_description=p5@TIMP2 | |||
}} | }} |
Latest revision as of 23:09, 17 September 2015
Short description: | p5@TIMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TIMP2_5end |
Coexpression cluster: | C706_Adipocyte_Preadipocyte_tenocyte_leiomyoma_chorionic_Olfactory_Hair |
Association with transcript: | 60bp_to_BC010410_5end |
EntrezGene: | TIMP2 |
HGNC: | 11821 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.30e-16 | 76 |
multi fate stem cell | 2.01e-14 | 427 |
somatic stem cell | 2.08e-13 | 433 |
mesodermal cell | 1.39e-12 | 121 |
stem cell | 3.97e-12 | 441 |
muscle precursor cell | 1.18e-11 | 58 |
myoblast | 1.18e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.18e-11 | 58 |
smooth muscle cell | 1.35e-11 | 43 |
smooth muscle myoblast | 1.35e-11 | 43 |
muscle cell | 1.01e-10 | 55 |
electrically responsive cell | 1.35e-09 | 61 |
electrically active cell | 1.35e-09 | 61 |
stromal cell | 2.81e-08 | 28 |
vascular associated smooth muscle cell | 5.48e-08 | 32 |
connective tissue cell | 5.23e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.51e-11 | 78 |
mesoderm | 6.22e-11 | 315 |
mesoderm-derived structure | 6.22e-11 | 315 |
presumptive mesoderm | 6.22e-11 | 315 |
skeletal muscle tissue | 1.57e-10 | 62 |
striated muscle tissue | 1.57e-10 | 62 |
myotome | 1.57e-10 | 62 |
dense mesenchyme tissue | 2.95e-10 | 73 |
muscle tissue | 3.21e-10 | 64 |
musculature | 3.21e-10 | 64 |
musculature of body | 3.21e-10 | 64 |
somite | 3.73e-10 | 71 |
presomitic mesoderm | 3.73e-10 | 71 |
presumptive segmental plate | 3.73e-10 | 71 |
dermomyotome | 3.73e-10 | 71 |
trunk paraxial mesoderm | 3.73e-10 | 71 |
paraxial mesoderm | 8.55e-10 | 72 |
presumptive paraxial mesoderm | 8.55e-10 | 72 |
trunk mesenchyme | 1.87e-09 | 122 |
mesenchyme | 1.19e-08 | 160 |
entire embryonic mesenchyme | 1.19e-08 | 160 |
multilaminar epithelium | 6.41e-08 | 83 |
splanchnic layer of lateral plate mesoderm | 1.43e-07 | 83 |
connective tissue | 9.86e-07 | 371 |