FFCP PHASE1:Hg19::chr17:56494950..56494961,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:56494950..56494961,- to FFCP PHASE1:Hg19::chr17:56494950..56494961,-: NSchange) |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54894 | |EntrezGene=54894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18505 | |HGNC=18505 | ||
|TSSclassifier=strong | |||
|UniProt=Q68DV7 | |UniProt=Q68DV7 | ||
|association_with_transcript=-19bp_to_NM_017763,uc002iwg.3,uc002iwh.3,uc010dcw.2_5end | |||
|cluster_id=chr17:56494950..56494961,- | |||
|coexpression_cluster_id=C2423 | |||
|description=CAGE_peak_6_at_RNF43_5end | |||
|id=chr17:56494950..56494961,- | |||
|ontology_enrichment_celltype=CL:0000066!4.10e-09!254;CL:0002251!2.16e-08!21;CL:0002076!7.36e-08!43;CL:0000223!1.32e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002253;1.27e-25;2!CL:0002563;2.50e-13;4!CL:0000182;4.47e-10;12!CL:0000317;1.70e-07;2!CL:1000448;1.70e-07;2!CL:0002308;1.70e-07;2!CL:0002140;1.70e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,1.44e-25,2;CL:0002563,2.67e-13,4;CL:0000182,3.96e-10,12;CL:0000223,5.89e-10,58;CL:0000317,1.36e-07,2;CL:1000448,1.36e-07,2;CL:0002308,1.36e-07,2;CL:0002140,1.36e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.09e-11;11!UBERON:0003104;4.81e-10;31!UBERON:0009497;2.42e-09;13!UBERON:0001041;5.22e-07;30 | |||
|ontology_enrichment_disease=DOID:305!1.74e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.27e-25;2!DOID:299;2.54e-12;25!DOID:3119;1.55e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,8.70e-26,2;DOID:299,2.34e-12,25;DOID:305,1.49e-08,106;DOID:3119,1.70e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.17e-11!169;UBERON:0000925!1.17e-11!169;UBERON:0006595!1.17e-11!169;UBERON:0001007!2.16e-10!155;UBERON:0001555!2.16e-10!155;UBERON:0007026!2.16e-10!155;UBERON:0004921!6.85e-10!129;UBERON:0004185!6.85e-10!129;UBERON:0007023!5.64e-09!115;UBERON:0005409!3.81e-07!35;UBERON:0000077!6.15e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0001052;2.50e-13;4!UBERON:0001242;2.50e-13;4!UBERON:0001262;2.50e-13;4!UBERON:0004786;2.50e-13;4!UBERON:0004808;2.50e-13;4!UBERON:0001277;2.50e-13;4!UBERON:0004907;7.50e-11;5!UBERON:0000485;5.28e-08;7!UBERON:0003929;5.28e-08;7!UBERON:0002419;1.70e-07;2!UBERON:0007771;1.70e-07;2!UBERON:0003297;1.70e-07;2!UBERON:0001821;1.70e-07;2!UBERON:0003487;1.70e-07;2!UBERON:0001820;1.70e-07;2!UBERON:0003350;4.15e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,2.67e-13,4;UBERON:0001242,2.67e-13,4;UBERON:0001262,2.67e-13,4;UBERON:0004786,2.67e-13,4;UBERON:0004808,2.67e-13,4;UBERON:0001277,2.67e-13,4;UBERON:0004907,7.89e-11,5;UBERON:0002419,1.36e-07,2;UBERON:0007771,1.36e-07,2;UBERON:0003297,1.36e-07,2;UBERON:0001821,1.36e-07,2;UBERON:0003487,1.36e-07,2;UBERON:0001820,1.36e-07,2;UBERON:0005089,1.36e-07,2;UBERON:0005088,1.36e-07,2;UBERON:0003350,4.28e-07,8;UBERON:0005911,6.34e-07,82;UBERON:0002365,8.97e-07,31;UBERON:0002330,8.97e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0,0,0,0,0.840547463227464,0.985207073399349,1.25937250101887,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.818238361772504,0,0.365921118388786,0,0.116193942869518,0.310983165046111,0.504641701751257,0,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.737930631258681,0,0.109750285408626,2.24803506515239,0.402115889646523,0.555530670951178,0,0,0,0,0.117408694235822,0,0,0,1.58040879591855,0,0,0,0,0.93733833986777,0.503946384596579,0,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0.200506470303285,0.184161977871793,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,1.72279661398852,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0.384380134730212,1.53135254993501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0.503865495708552,0,0.615424027305347,0,0,0.179021174675609,0,0,0,0,0,0.278304294485554,0,0.260427761085233,0.0874599999961957,0,0.1137934482855,0,0,0,0,0,0,0,0,1.21637185924347,0.591095237907095,0.219385397153973,0,0.278847488557207,0.153900517007594,0,0,0,0.108647371922008,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0.326465616318295,1.55488378577335,1.51472047819464,0.995261931078505,0.884575645033392,0.611030144933625,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0.063186579628488,0.60129367765797,0.103688191397247,0,0,0,0,0,0,0,0.391969589657511,0.261177619741208,0,0,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0.391102765469606,0.160317640503067,0.213452994739353,0,0.288180834308212,0.572682980829578,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0.0671834724867263,0,0,1.89079637537337,2.22522817629149,3.16796656114669,0,0.338693328263138,0,0.272406812223151,0.160753148465019,0.137539436597234,0,0,0,0.121499113316049,0,0.0788057072991982,0.524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0.342173675768659,0,0.213574825135389,0.471612915298998,0.414239055347196,0,0,0.852548188666271,0.638341257770182,0,0,0,0,0.628216385000937,0,0.122026264901963,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0.235939446695481,0,0.924205329202706,0,0,0,0.150420656698515,0.40341013740704,0,0.261906694481422,0,0.739280431085226,0.135075169236789,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0.682986574053893,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0.118193840883968,0,0.313972371402056,0.314231179832004,0.280272163313789,0,0,0,0.214429632529969,0,0,0,0,0,0,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,1.27595303699816,1.95068679971631,0,0,0,0.485710993059139,0,0.994753875806841,0,4.17900503544152,0,0,0.385870790539723,0.437119121007915,0,0,0,0.196308467114945,0,0,0,0,0,0,0.357107877211315,0,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0.534434810531121,0.275684698604535,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0.31037357147929,0,0,0,0,0,0.336760265072938,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0.813792356631477,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0,0,0,0,0.840547463227464,0.985207073399349,1.25937250101887,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.818238361772504,0,0.365921118388786,0,0.116193942869518,0.310983165046111,0.504641701751257,0,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.737930631258681,0,0.109750285408626,2.24803506515239,0.402115889646523,0.555530670951178,0,0,0,0,0.117408694235822,0,0,0,1.58040879591855,0,0,0,0,0.93733833986777,0.503946384596579,0,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0.200506470303285,0.184161977871793,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,1.72279661398852,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0.384380134730212,1.53135254993501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0.503865495708552,0,0.615424027305347,0,0,0.179021174675609,0,0,0,0,0,0.278304294485554,0,0.260427761085233,0.0874599999961957,0,0.1137934482855,0,0,0,0,0,0,0,0,1.21637185924347,0.591095237907095,0.219385397153973,0,0.278847488557207,0.153900517007594,0,0,0,0.108647371922008,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0.326465616318295,1.55488378577335,1.51472047819464,0.995261931078505,0.884575645033392,0.611030144933625,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0.063186579628488,0.60129367765797,0.103688191397247,0,0,0,0,0,0,0,0.391969589657511,0.261177619741208,0,0,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0.391102765469606,0.160317640503067,0.213452994739353,0,0.288180834308212,0.572682980829578,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0.0671834724867263,0,0,1.89079637537337,2.22522817629149,3.16796656114669,0,0.338693328263138,0,0.272406812223151,0.160753148465019,0.137539436597234,0,0,0,0.121499113316049,0,0.0788057072991982,0.524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0.342173675768659,0,0.213574825135389,0.471612915298998,0.414239055347196,0,0,0.852548188666271,0.638341257770182,0,0,0,0,0.628216385000937,0,0.122026264901963,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0.235939446695481,0,0.924205329202706,0,0,0,0.150420656698515,0.40341013740704,0,0.261906694481422,0,0.739280431085226,0.135075169236789,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0.682986574053893,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0.118193840883968,0,0.313972371402056,0.314231179832004,0.280272163313789,0,0,0,0.214429632529969,0,0,0,0,0,0,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,1.27595303699816,1.95068679971631,0,0,0,0.485710993059139,0,0.994753875806841,0,4.17900503544152,0,0,0.385870790539723,0.437119121007915,0,0,0,0.196308467114945,0,0,0,0,0,0,0.357107877211315,0,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0.534434810531121,0.275684698604535,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0.31037357147929,0,0,0,0,0,0.336760265072938,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0.813792356631477,0.665756774185513,0,0 | ||
|short_description=p6@RNF43 | |||
}} | }} |
Latest revision as of 11:27, 16 September 2015
Short description: | p6@RNF43 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RNF43_5end |
Coexpression cluster: | C2423_small_signet_papillotubular_malignant_hepatocellular_maxillary_colon |
Association with transcript: | -19bp_to_NM_017763, uc002iwg.3, uc002iwh.3, uc010dcw.2_5end |
EntrezGene: | RNF43 |
HGNC: | 18505 |
UniProt: | Q68DV7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 1.44e-25 | 2 |
intestinal epithelial cell | 2.67e-13 | 4 |
hepatocyte | 3.96e-10 | 12 |
endodermal cell | 5.89e-10 | 58 |
sebum secreting cell | 1.36e-07 | 2 |
epithelial cell of sweat gland | 1.36e-07 | 2 |
epithelial cell of skin gland | 1.36e-07 | 2 |
acinar cell of sebaceous gland | 1.36e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
rectum | 2.67e-13 | 4 |
intestinal mucosa | 2.67e-13 | 4 |
wall of intestine | 2.67e-13 | 4 |
gastrointestinal system mucosa | 2.67e-13 | 4 |
gastrointestinal system epithelium | 2.67e-13 | 4 |
intestinal epithelium | 2.67e-13 | 4 |
lower digestive tract | 7.89e-11 | 5 |
skin gland | 1.36e-07 | 2 |
epidermis gland | 1.36e-07 | 2 |
gland of integumental system | 1.36e-07 | 2 |
sebaceous gland | 1.36e-07 | 2 |
skin sebaceous gland | 1.36e-07 | 2 |
sweat gland | 1.36e-07 | 2 |
sweat gland placode | 1.36e-07 | 2 |
sebaceous gland placode | 1.36e-07 | 2 |
epithelium of mucosa | 4.28e-07 | 8 |
endo-epithelium | 6.34e-07 | 82 |
exocrine gland | 8.97e-07 | 31 |
exocrine system | 8.97e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 8.70e-26 | 2 |
adenocarcinoma | 2.34e-12 | 25 |
carcinoma | 1.49e-08 | 106 |
gastrointestinal system cancer | 1.70e-08 | 14 |