FFCP PHASE1:Hg19::chr17:4689649..4689671,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:4689649..4689671,- to FFCP PHASE1:Hg19::chr17:4689649..4689671,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=284013 | |EntrezGene=284013 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30387 | |HGNC=30387 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z5L0,E9PGP4,E9PAU9,C9JQ15 | |UniProt=Q7Z5L0,E9PGP4,E9PAU9,C9JQ15 | ||
|association_with_transcript=57bp_to_ENST00000328739,ENST00000354194,ENST00000416307,ENST00000441199,NM_001144939,NM_001144940,NM_001144941,NM_182566,uc002fyx.2,uc002fyy.2,uc010vsh.1,uc010vsi.1_5end | |||
|cluster_id=chr17:4689649..4689671,- | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_1_at_VMO1_5end | |||
|id=chr17:4689649..4689671,- | |||
|ontology_enrichment_celltype=CL:0002057!3.00e-21!42;CL:0000860!8.98e-19!45;CL:0000557!8.92e-17!71;CL:0000766!1.63e-16!76;CL:0000839!2.28e-16!70;CL:0002194!3.84e-16!63;CL:0000576!3.84e-16!63;CL:0000040!3.84e-16!63;CL:0000559!3.84e-16!63;CL:0002009!4.93e-16!65;CL:0000763!1.43e-08!112;CL:0000049!1.43e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.68e-30;33!CL:0002057;2.68e-30;33!CL:0000473;2.09e-27;39!CL:0000234;2.09e-27;39!CL:0000576;7.54e-23;48!CL:0000766;1.16e-16;69!CL:0000875;2.19e-07;3!CL:0002396;2.19e-07;3!CL:0000763;2.21e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.64e-43,48;CL:0000234,3.64e-43,48;CL:0000860,1.65e-39,42;CL:0002057,1.65e-39,42;CL:0002194,3.63e-34,59;CL:0000576,3.63e-34,59;CL:0000040,3.63e-34,59;CL:0000559,3.63e-34,59;CL:0002009,1.13e-32,61;CL:0000839,5.67e-31,66;CL:0000766,6.89e-31,72;CL:0000557,2.44e-30,67;CL:0000763,1.47e-20,108;CL:0000049,1.47e-20,108;CL:0000738,1.03e-14,136;CL:0002087,3.59e-13,115;CL:0002031,4.40e-12,120;CL:0002032,6.90e-10,161;CL:0000837,6.90e-10,161;CL:0000037,1.11e-09,168;CL:0000988,1.25e-08,177;CL:0000875,2.20e-07,3;CL:0002396,2.20e-07,3;CL:0002393,3.93e-07,9;CL:0002397,3.93e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.78e-29;42!CL:0000049;1.90e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.41e-15!115;UBERON:0002371!3.40e-14!80;UBERON:0001474!1.35e-12!86;UBERON:0004765!2.17e-12!101;UBERON:0001434!2.17e-12!101;UBERON:0002405!4.28e-12!115;UBERON:0002390!7.37e-12!102;UBERON:0003061!7.37e-12!102;UBERON:0002193!7.31e-11!112;UBERON:0002204!2.09e-09!167;UBERON:0003081!6.35e-09!216;UBERON:0000468!6.04e-08!659;UBERON:0000479!1.74e-07!787;UBERON:0003075!8.60e-07!86;UBERON:0007284!8.60e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.20e-25,76;UBERON:0002405,9.34e-23,93;UBERON:0001474,1.07e-22,82;UBERON:0002390,5.05e-21,98;UBERON:0003061,5.05e-21,98;UBERON:0004765,1.11e-19,90;UBERON:0002193,4.43e-19,108;UBERON:0001434,5.62e-19,100;UBERON:0002204,8.77e-15,167;UBERON:0003081,1.78e-14,203 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0.872338524100369,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,4.72037132218685,1.15148819429164,0.77408061658038,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,2.23915474239924,0,0,3.78035420826868,3.40088349319928,4.12392904019288,1.85943229524548,3.70051099219643,3.09706370895104,3.74000110018796,1.5369642391746,1.41889337933151,5.86067657252252,4.51839278508678,0,5.27078550719293,4.09359225086769,3.82029923556644,6.12167784741805,4.8139354061414,5.75403413219137,1.9791078011203,2.39356389145958,0.852449501065388,2.32167390902867,0.56738522469114,1.86846674698672,3.26623264833766,3.12889751052121,1.73751075764093,2.42159801053347,1.47311054395026,2.21523671208619,2.11255286311942,1.27562579979026,1.88692780957538,0,0.150176892841506,0,18.5258283431812,13.9241674039363,41.4647629045719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0.821127996921047,0,0,0,2.43806866313962,4.02420515822182,0,2.1686349143074,3.00802746381534,21.0027452493194,0,0.973269740605272,0,0,0,0.916853528483988,0.364295288292542,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0.860234595106124,0.694281003215189,0,0.838998872419812,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0.949265659568129,0.366403487860815,0,0,0,0,0,0,0.286836620748814,1.06400514659507,0,0,0,0,0,0,0,1.72852777344,0.468642863667593,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,8.31602000097437,2.96720315134268,0.910161361938026,0,0,0,0,0.877955241761676,0,33.5030871361711,0,0,0.213557388818567,0,0.300091096084402,0,0.257640540045629,0.18611685633159,0,0.194874010322397,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0.590789906681404,0,0,3.08822058537346,0,0,0,0.0925884451585296,1.3032332212413,1.03993478527958,0,0.927443239800615,0.352226082707465,0,0,0,0,0,2.95460407304877,0,0.594524649154913,0,0,0,0,0,0,0,1.05658120815871,0.621984346622316,0.864719720501769,0.6312121671319,0,0.381988425558278,0,0,0,0.901029173531752,0,0,0.43596006883328,0,1.80980402060889,3.57656445851882,0,0,0,0,0,0,0.57191197463259,1.08524321078289,1.64648067356154,0.325736184293735,0.355391948742546,0,0,0,0.099972991182057,1.2162378064119,4.52031382288914,4.21667878966063,0,0,0,0.289562613335158,1.2328579353023,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0.234282829985426,0.300946099727719,0,2.0694614258501,0,0,0.260650843404249,0,0,0.620304078368662,2.5885704098234,0.320182673410333,0,0,0,0.248107807818777,0,0.280660094433074,0.128139149255701,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.229628896329213,0,0.262248829918848,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,1.33953315142039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384380134730212,0,0.10115778085555,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0.636406495851874,0,0.179872457583315,0,0,0,1.58510321173008,0,0,2.68084838594413,0,0,0.424216295861138,1.13008116620243,0,1.32687795048244,0.438450885253763,0,0,0.202910376962704,0,1.40847801266121,0,0.0982490410131212,0,0,0.422215270595328,1.31717957183961,2.65631221636001,8.04849856563461,0,0,3.26672954583968,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0.296964680832639,0,0.994147647766298,0.140669416410513,0,0,0,4.38345574152353,0,0,0,0,0,0,0,0,0.887790650732402,0,0,0,0.278304294485554,0,0,1.39935999993913,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.60298219312704,0,0.110579259931225,0,1.53569778007781,0,0,0.538651809526579,0,0,0,0,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,1.22206028986725,0,0,0,0.471807930864739,0.802577647298789,0.702793337176017,0,0,0,0,0,0,3.85438135733777,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,2.48578814858586,0,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,1.39641200636127,0.229160424011684,0.717873024576814,0.599037001496973,0.858452096273142,0.89268582976749,0.0671834724867263,0,0,0,0,0,0,0.0846733320657845,0,0.408610218334727,0,0.137539436597234,0,0.674921674654501,0,0.0607495566580247,0,0.394028536495991,0.209818352539992,0,0,0,0,4.63464379255802,0,0,0,0,0,0.082092520749339,0,0.679872549120754,2.93104467356165,6.62534444561107,0.129282956361551,0.39669780522807,0,0,2.77647272676006,0.157204305099666,3.31391244277756,1.9846640872478,0,0,0,0,0,0.306345576763462,0,0,0,0.244052529803926,0.250381861413,2.29363678276028,0.443716206147409,0.18628920882415,0.553394539744923,0,0,0,0,0,0,0,0,0.554805861502613,0.189403005275089,0.50313580350515,0,0.228840068396924,0.151230923763239,0.15543720058278,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308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| |phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0.872338524100369,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,4.72037132218685,1.15148819429164,0.77408061658038,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,2.23915474239924,0,0,3.78035420826868,3.40088349319928,4.12392904019288,1.85943229524548,3.70051099219643,3.09706370895104,3.74000110018796,1.5369642391746,1.41889337933151,5.86067657252252,4.51839278508678,0,5.27078550719293,4.09359225086769,3.82029923556644,6.12167784741805,4.8139354061414,5.75403413219137,1.9791078011203,2.39356389145958,0.852449501065388,2.32167390902867,0.56738522469114,1.86846674698672,3.26623264833766,3.12889751052121,1.73751075764093,2.42159801053347,1.47311054395026,2.21523671208619,2.11255286311942,1.27562579979026,1.88692780957538,0,0.150176892841506,0,18.5258283431812,13.9241674039363,41.4647629045719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0.821127996921047,0,0,0,2.43806866313962,4.02420515822182,0,2.1686349143074,3.00802746381534,21.0027452493194,0,0.973269740605272,0,0,0,0.916853528483988,0.364295288292542,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0.860234595106124,0.694281003215189,0,0.838998872419812,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0.949265659568129,0.366403487860815,0,0,0,0,0,0,0.286836620748814,1.06400514659507,0,0,0,0,0,0,0,1.72852777344,0.468642863667593,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,8.31602000097437,2.96720315134268,0.910161361938026,0,0,0,0,0.877955241761676,0,33.5030871361711,0,0,0.213557388818567,0,0.300091096084402,0,0.257640540045629,0.18611685633159,0,0.194874010322397,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0.590789906681404,0,0,3.08822058537346,0,0,0,0.0925884451585296,1.3032332212413,1.03993478527958,0,0.927443239800615,0.352226082707465,0,0,0,0,0,2.95460407304877,0,0.594524649154913,0,0,0,0,0,0,0,1.05658120815871,0.621984346622316,0.864719720501769,0.6312121671319,0,0.381988425558278,0,0,0,0.901029173531752,0,0,0.43596006883328,0,1.80980402060889,3.57656445851882,0,0,0,0,0,0,0.57191197463259,1.08524321078289,1.64648067356154,0.325736184293735,0.355391948742546,0,0,0,0.099972991182057,1.2162378064119,4.52031382288914,4.21667878966063,0,0,0,0.289562613335158,1.2328579353023,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0.234282829985426,0.300946099727719,0,2.0694614258501,0,0,0.260650843404249,0,0,0.620304078368662,2.5885704098234,0.320182673410333,0,0,0,0.248107807818777,0,0.280660094433074,0.128139149255701,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.229628896329213,0,0.262248829918848,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,1.33953315142039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384380134730212,0,0.10115778085555,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0.636406495851874,0,0.179872457583315,0,0,0,1.58510321173008,0,0,2.68084838594413,0,0,0.424216295861138,1.13008116620243,0,1.32687795048244,0.438450885253763,0,0,0.202910376962704,0,1.40847801266121,0,0.0982490410131212,0,0,0.422215270595328,1.31717957183961,2.65631221636001,8.04849856563461,0,0,3.26672954583968,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0.296964680832639,0,0.994147647766298,0.140669416410513,0,0,0,4.38345574152353,0,0,0,0,0,0,0,0,0.887790650732402,0,0,0,0.278304294485554,0,0,1.39935999993913,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.60298219312704,0,0.110579259931225,0,1.53569778007781,0,0,0.538651809526579,0,0,0,0,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,1.22206028986725,0,0,0,0.471807930864739,0.802577647298789,0.702793337176017,0,0,0,0,0,0,3.85438135733777,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,2.48578814858586,0,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,1.39641200636127,0.229160424011684,0.717873024576814,0.599037001496973,0.858452096273142,0.89268582976749,0.0671834724867263,0,0,0,0,0,0,0.0846733320657845,0,0.408610218334727,0,0.137539436597234,0,0.674921674654501,0,0.0607495566580247,0,0.394028536495991,0.209818352539992,0,0,0,0,4.63464379255802,0,0,0,0,0,0.082092520749339,0,0.679872549120754,2.93104467356165,6.62534444561107,0.129282956361551,0.39669780522807,0,0,2.77647272676006,0.157204305099666,3.31391244277756,1.9846640872478,0,0,0,0,0,0.306345576763462,0,0,0,0.244052529803926,0.250381861413,2.29363678276028,0.443716206147409,0.18628920882415,0.553394539744923,0,0,0,0,0,0,0,0,0.554805861502613,0.189403005275089,0.50313580350515,0,0.228840068396924,0.151230923763239,0.15543720058278,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308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| ||
|short_description=p1@VMO1 | |||
}} | }} |
Latest revision as of 18:10, 15 September 2015
Short description: | p1@VMO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VMO1_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | 57bp_to_ENST00000328739, ENST00000354194, ENST00000416307, ENST00000441199, NM_001144939, NM_001144940, NM_001144941, NM_182566, uc002fyx.2, uc002fyy.2, uc010vsh.1, uc010vsi.1_5end |
EntrezGene: | VMO1 |
HGNC: | 30387 |
UniProt: | Q7Z5L0E9PGP4E9PAU9C9JQ15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.64e-43 | 48 |
phagocyte | 3.64e-43 | 48 |
classical monocyte | 1.65e-39 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.65e-39 | 42 |
monopoietic cell | 3.63e-34 | 59 |
monocyte | 3.63e-34 | 59 |
monoblast | 3.63e-34 | 59 |
promonocyte | 3.63e-34 | 59 |
macrophage dendritic cell progenitor | 1.13e-32 | 61 |
myeloid lineage restricted progenitor cell | 5.67e-31 | 66 |
myeloid leukocyte | 6.89e-31 | 72 |
granulocyte monocyte progenitor cell | 2.44e-30 | 67 |
myeloid cell | 1.47e-20 | 108 |
common myeloid progenitor | 1.47e-20 | 108 |
leukocyte | 1.03e-14 | 136 |
nongranular leukocyte | 3.59e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 4.40e-12 | 120 |
hematopoietic oligopotent progenitor cell | 6.90e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.90e-10 | 161 |
hematopoietic stem cell | 1.11e-09 | 168 |
hematopoietic cell | 1.25e-08 | 177 |
non-classical monocyte | 2.20e-07 | 3 |
CD14-low, CD16-positive monocyte | 2.20e-07 | 3 |
intermediate monocyte | 3.93e-07 | 9 |
CD14-positive, CD16-positive monocyte | 3.93e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.20e-25 | 76 |
immune system | 9.34e-23 | 93 |
bone element | 1.07e-22 | 82 |
hematopoietic system | 5.05e-21 | 98 |
blood island | 5.05e-21 | 98 |
skeletal element | 1.11e-19 | 90 |
hemolymphoid system | 4.43e-19 | 108 |
skeletal system | 5.62e-19 | 100 |
musculoskeletal system | 8.77e-15 | 167 |
lateral plate mesoderm | 1.78e-14 | 203 |