FFCP PHASE1:Hg19::chr17:46806016..46806029,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:46806016..46806029,- to FFCP PHASE1:Hg19::chr17:46806016..46806029,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10481 | |EntrezGene=10481 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5112 | |HGNC=5112 | ||
|TSSclassifier=strong | |||
|UniProt=Q4KR72,Q92826 | |UniProt=Q4KR72,Q92826 | ||
|association_with_transcript=81bp_to_NM_006361,uc002ioa.2_5end | |||
|cluster_id=chr17:46806016..46806029,- | |||
|coexpression_cluster_id=C254 | |||
|description=CAGE_peak_5_at_HOXB13_5end | |||
|id=chr17:46806016..46806029,- | |||
|ontology_enrichment_celltype=CL:0000148!5.96e-17!10;CL:0000541!5.96e-17!10;CL:0002567!1.36e-15!3;CL:0000147!6.24e-12!14;CL:0000710!3.69e-08!20;CL:0000333!1.83e-07!41;CL:0002231!5.55e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002567;1.58e-37;3!CL:0000148;4.08e-20;10!CL:0000147;1.84e-14;14!CL:0000710;3.34e-10;20!CL:0000075;1.30e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,1.39e-37,3;CL:0000148,3.98e-20,10;CL:0000541,3.98e-20,10;CL:0000147,1.81e-14,14;CL:0000710,3.30e-10,20;CL:0000075,1.29e-07,27;CL:0000333,3.41e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0009847;4.64e-18;3!UBERON:0003353;4.64e-18;3 | |||
|ontology_enrichment_disease=DOID:171!2.79e-17!10;DOID:3095!8.91e-13!22;DOID:2994!8.91e-13!22;DOID:0050687!1.10e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:171;4.45e-31;10!DOID:3095;3.74e-14;22!DOID:2994;3.74e-14;22!DOID:3193;1.20e-07;2!DOID:962;1.20e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.45e-31,10;DOID:3095,3.74e-14,22;DOID:2994,3.74e-14,22;DOID:3193,1.20e-07,2;DOID:962,1.20e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000059!1.04e-10!11;UBERON:0001155!1.13e-08!9;UBERON:0001046!1.58e-08!19;UBERON:0001737!2.02e-08!9;UBERON:0002367!3.50e-07!11;UBERON:0010147!3.50e-07!11;UBERON:0009846!3.50e-07!11;UBERON:0003353!3.50e-07!11;UBERON:0004902!3.50e-07!11;UBERON:0003820!3.50e-07!11;UBERON:0009847!3.50e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;9.18e-50;4!UBERON:0000923;9.18e-50;4!UBERON:0010316;9.18e-50;4!UBERON:0005291;9.18e-50;4!UBERON:0002050;6.47e-40;5!UBERON:0005423;6.47e-40;5!UBERON:0003714;1.20e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003714,1.20e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0.482022059766964,0,0.435758888184812,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,4.96584953225761,5.86087236050235,1.71072446022705,0,5.1058319833466,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80708320073629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.66567381413207,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,2.98578579323551,0.265372693510018,3.05515072466813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,1.86705782949428,9.56587140457573,2.60265104943905,6.14509409770568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.38659226310407,0,0,0,0,0,0,0,0,0,0,0,38.9309906622242,8.63424021355654,0,0,0.913158720509496,0,0,0,0,0.348724276104376,3.47716544605159,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475680363110274,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0.482022059766964,0,0.435758888184812,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,4.96584953225761,5.86087236050235,1.71072446022705,0,5.1058319833466,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80708320073629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.66567381413207,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,2.98578579323551,0.265372693510018,3.05515072466813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,1.86705782949428,9.56587140457573,2.60265104943905,6.14509409770568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.38659226310407,0,0,0,0,0,0,0,0,0,0,0,38.9309906622242,8.63424021355654,0,0,0.913158720509496,0,0,0,0,0.348724276104376,3.47716544605159,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475680363110274,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p5@HOXB13 | |||
}} | }} |
Latest revision as of 17:32, 15 September 2015
Short description: | p5@HOXB13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXB13_5end |
Coexpression cluster: | C254_prostate_rhabdomyosarcoma_seminal_Fibroblast_transitionalcell_Smooth_Iris |
Association with transcript: | 81bp_to_NM_006361, uc002ioa.2_5end |
EntrezGene: | HOXB13 |
HGNC: | 5112 |
UniProt: | Q4KR72Q92826 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 1.39e-37 | 3 |
melanocyte | 3.98e-20 | 10 |
melanoblast | 3.98e-20 | 10 |
pigment cell | 1.81e-14 | 14 |
neurecto-epithelial cell | 3.30e-10 | 20 |
columnar/cuboidal epithelial cell | 1.29e-07 | 27 |
migratory neural crest cell | 3.41e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
neural tissue | 1.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.45e-31 | 10 |
germ cell and embryonal cancer | 3.74e-14 | 22 |
germ cell cancer | 3.74e-14 | 22 |
peripheral nerve sheath neoplasm | 1.20e-07 | 2 |
neurofibroma | 1.20e-07 | 2 |