FFCP PHASE1:Hg19::chr17:39680005..39680049,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:39680005..39680049,- to FFCP PHASE1:Hg19::chr17:39680005..39680049,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:39680005..39680049,- | |||
|coexpression_cluster_id=C2407 | |||
|description=CAGE_peak_at_chr17:39680005..39680049,- | |||
|id=chr17:39680005..39680049,- | |||
|ontology_enrichment_celltype=CL:0000066!8.29e-31!254;CL:0002076!6.56e-18!43;CL:0000223!2.18e-16!59;CL:0002368!1.44e-09!13;CL:0002251!7.00e-09!21;CL:0000077!1.32e-07!19;CL:0000076!2.22e-07!62;CL:0000082!5.74e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002368;7.34e-18;13!CL:0002328;8.88e-16;3!CL:0002202;1.15e-13;9!CL:0002632;1.15e-13;9!CL:0000650;2.59e-10;2!CL:1000500;2.59e-10;2!CL:1000618;2.59e-10;2!CL:1001318;2.59e-10;2!CL:0000575;2.59e-10;2!CL:0002173;2.59e-10;2!CL:0000077;1.63e-08;19!CL:0002076;3.13e-08;42!CL:0002577;1.89e-07;3!CL:1000746;9.12e-07;7!CL:1000612;9.12e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.16e-19,253;CL:0002368,7.77e-18,13;CL:0002328,9.85e-16,3;CL:0002202,1.17e-13,9;CL:0002632,1.17e-13,9;CL:0002076,9.00e-12,42;CL:0000575,2.25e-10,2;CL:0000650,6.08e-10,2;CL:1000500,6.08e-10,2;CL:1000618,6.08e-10,2;CL:1001318,6.08e-10,2;CL:0002173,6.08e-10,2;CL:0000223,1.61e-09,58;CL:0000077,1.54e-08,19;CL:0000076,1.86e-08,63;CL:0002577,1.75e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.16e-16!106;DOID:0050687!4.21e-13!143;DOID:299!2.77e-11!25;DOID:162!1.33e-07!235;DOID:1749!2.94e-07!14;DOID:14566!4.26e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:5093;3.33e-12;4!DOID:1612;3.33e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.16e-12,4;DOID:1612,3.16e-12,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.00e-20!169;UBERON:0000925!8.00e-20!169;UBERON:0006595!8.00e-20!169;UBERON:0001007!2.23e-14!155;UBERON:0001555!2.23e-14!155;UBERON:0007026!2.23e-14!155;UBERON:0000077!3.91e-12!130;UBERON:0004921!4.07e-12!129;UBERON:0004185!4.07e-12!129;UBERON:0005911!3.99e-11!82;UBERON:0001004!3.40e-10!72;UBERON:0005631!2.28e-09!14;UBERON:0000158!2.28e-09!14;UBERON:0000065!7.69e-09!53;UBERON:0000466!2.12e-08!126;UBERON:0004807!2.87e-08!28;UBERON:0000464!5.49e-08!104;UBERON:0000161!1.96e-07!35;UBERON:0005153!2.87e-07!37;UBERON:0000064!3.63e-07!219;UBERON:0009569!4.07e-07!113;UBERON:0005177!4.37e-07!107;UBERON:0005178!4.84e-07!34;UBERON:0002224!4.84e-07!34;UBERON:0004802!5.74e-07!19;UBERON:0000115!5.74e-07!19;UBERON:0001041!7.16e-07!98;UBERON:0005157!9.63e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;8.88e-16;3!UBERON:0002031;8.88e-16;3!UBERON:0003567;2.59e-10;2!UBERON:0003838;2.59e-10;2!UBERON:0003586;2.59e-10;2!UBERON:0005169;2.59e-10;2!UBERON:0002321;2.59e-10;2!UBERON:0005215;2.59e-10;2!UBERON:0002303;2.59e-10;2!UBERON:0002319;2.59e-10;2!UBERON:0002185;1.19e-09;5!UBERON:0007196;4.41e-08;15!UBERON:0001558;4.41e-08;15!UBERON:0000485;5.24e-07;7!UBERON:0000074;9.12e-07;7!UBERON:0001229;9.12e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,9.85e-16,3;UBERON:0002031,9.85e-16,3;UBERON:0003567,6.08e-10,2;UBERON:0003838,6.08e-10,2;UBERON:0003586,6.08e-10,2;UBERON:0005169,6.08e-10,2;UBERON:0002321,6.08e-10,2;UBERON:0005215,6.08e-10,2;UBERON:0002303,6.08e-10,2;UBERON:0002319,6.08e-10,2;UBERON:0002185,1.26e-09,5;UBERON:0005631,1.51e-08,14;UBERON:0000158,1.51e-08,14;UBERON:0007196,4.45e-08,15;UBERON:0001558,4.45e-08,15;UBERON:0003124,6.43e-07,7;UBERON:0006554,8.49e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,6.28021051175185,0.218441372130172,2.11013582582763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.51652734687356,2.10844143144775,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0,1.09288586487763,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0.113432183160021,0.358779271377724,0,0,0,0,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0,0,0.710019185033229,0.10075209822764,0,0.57978255948989,0.818238361772504,0.573609190778008,0,0.132529768321485,0.580969714347592,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0.185176890317059,0,0,0,0,0,0,0,0,3.1608175918371,6.00940313466411,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.799783929456456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.892144943985809,0,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,1.66435439510497,3.0239029332968,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0.116210378459959,0.120859449591622,1.60405176242628,0.368323955743585,0,0.182091168006717,0,0.451199612907412,0.693138033939733,1.56869953835371,0,0,0,0,0,0,1.08378575017541,1.00337954770971,0.254876273045038,0,0.447749509444357,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.960950336825531,7.14631189969671,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,3.35151137767894,0,0.188287601553558,0.86101074534246,3.36942951335251,2.66058092122005,0,0,0,0,0,0,0,0,0,0,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0.561421621224659,0,0,0,0,0.71623345421307,0.296964680832639,1.22864280839693,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0.449341755736634,0.537063524026827,0,0.197286811273867,0,0,0,0,0,3.64598865519327,0.0874599999961957,0.724999575434793,1.93448862085349,1.27126825146383,0.472775363535873,0,0,0,0,0,0,0,0.295547618953547,0,0,0.83654246567162,0,0,0.23056390438806,0.179515288819544,3.58536327342627,0.638002319463839,0,3.19820865611181,0,0,0,0,0,0,0,0,0,0.163232808159148,0.282706142867882,0,0.995261931078505,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347119476670262,0,0.870592065804026,0,0,0,0,0,0,0,0,0,0,0,0.977756913674015,0.0801588202515337,0.213452994739353,1.9980960958213,0.288180834308212,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0.429226048136571,0,0,0,0,0.236349546921671,0.247247575143499,0.202210631562555,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0,0,0,0,0.105600336519406,0.537862017998534,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0.601030435988874,0.380805212168795,0,0,0.429642228169954,0,0,0,0,0,0,0,0.643324774124777,0,0.226705925512272,3.00979216620984,0,0.537266523244462,1.85280868296583,2.41212454536578,1.06013487567529,1.15748422962549,1.8583668471838,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0.845248493434508,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0,1.10057159113007,0.115525666150338,0,0,0,0,0,0,1.30953347240711,0,0.887136517302272,0,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0.266107110487916,0,0,0,0,0,0.333694205676207,0.078493092850514,0,0.840816489941367,0,0,0.47775168788705,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0.423387050190929,0.4582137370881,0,0,0.223710863595585,0.098150233615243,0.365753774946808,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0,0.150962843566674,0.308696632431779,0,0,0,0,0,0,0,0.339854229375634,0,0,0,1.42843150884526,0,0.240724100067505,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0.432626562123789,0,0,1.14028650910293,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0.0645889098360061,0,0,0,0,0.217716747896961,1.02669990325584,0.134704106029175,0.215166616178029,0.332660356546013,0.162806537221949,0,0,0.0898252021065869,0,0,0.813792356631477,0,0.201273793591026,0 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| ||
|short_description=p@chr17:39680005..39680049,- | |||
}} | }} |
Latest revision as of 16:42, 25 July 2015
Short description: | p@chr17:39680005..39680049, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39680005..39680049, - |
Coexpression cluster: | C2407_Alveolar_Tracheal_Small_Bronchial_MCF7_Amniotic_Renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.16e-19 | 253 |
respiratory epithelial cell | 7.77e-18 | 13 |
bronchial epithelial cell | 9.85e-16 | 3 |
epithelial cell of tracheobronchial tree | 1.17e-13 | 9 |
epithelial cell of lower respiratory tract | 1.17e-13 | 9 |
endo-epithelial cell | 9.00e-12 | 42 |
corneal epithelial cell | 2.25e-10 | 2 |
mesangial cell | 6.08e-10 | 2 |
kidney interstitial cell | 6.08e-10 | 2 |
juxtaglomerular complex cell | 6.08e-10 | 2 |
renal interstitial pericyte | 6.08e-10 | 2 |
extraglomerular mesangial cell | 6.08e-10 | 2 |
endodermal cell | 1.61e-09 | 58 |
mesothelial cell | 1.54e-08 | 19 |
squamous epithelial cell | 1.86e-08 | 63 |
placental epithelial cell | 1.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 9.85e-16 | 3 |
epithelium of bronchus | 9.85e-16 | 3 |
abdomen connective tissue | 6.08e-10 | 2 |
abdominal segment connective tissue | 6.08e-10 | 2 |
trunk connective tissue | 6.08e-10 | 2 |
interstitial tissue | 6.08e-10 | 2 |
extraglomerular mesangium | 6.08e-10 | 2 |
kidney interstitium | 6.08e-10 | 2 |
juxtaglomerular apparatus | 6.08e-10 | 2 |
mesangium | 6.08e-10 | 2 |
bronchus | 1.26e-09 | 5 |
extraembryonic membrane | 1.51e-08 | 14 |
membranous layer | 1.51e-08 | 14 |
tracheobronchial tree | 4.45e-08 | 15 |
lower respiratory tract | 4.45e-08 | 15 |
chorion | 6.43e-07 | 7 |
urinary system structure | 8.49e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.16e-12 | 4 |
breast cancer | 3.16e-12 | 4 |