FFCP PHASE1:Hg19::chr17:38497662..38497713,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:38497662..38497713,+ to FFCP PHASE1:Hg19::chr17:38497662..38497713,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5914 | |EntrezGene=5914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9864 | |HGNC=9864 | ||
|TSSclassifier=strong | |||
|UniProt=B3KUX3 | |UniProt=B3KUX3 | ||
|association_with_transcript=22bp_to_AK098172_5end | |||
|cluster_id=chr17:38497662..38497713,+ | |||
|description=CAGE_peak_4_at_RARA_5end | |||
|id=chr17:38497662..38497713,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.03e-26!42;CL:0000738!2.55e-25!140;CL:0000860!1.98e-24!45;CL:0000766!3.37e-21!76;CL:0002031!1.55e-19!124;CL:0002087!6.49e-18!119;CL:0000557!8.19e-18!71;CL:0000037!3.52e-16!172;CL:0000566!3.52e-16!172;CL:0000839!8.65e-16!70;CL:0000988!5.06e-15!182;CL:0002009!5.20e-15!65;CL:0002032!2.76e-14!165;CL:0000837!2.76e-14!165;CL:0002194!3.71e-14!63;CL:0000576!3.71e-14!63;CL:0000040!3.71e-14!63;CL:0000559!3.71e-14!63;CL:0000763!1.45e-10!112;CL:0000049!1.45e-10!112;CL:0000791!2.19e-07!18;CL:0000789!2.19e-07!18;CL:0002420!2.19e-07!18;CL:0002419!2.19e-07!18;CL:0000790!2.19e-07!18;CL:0000094!6.91e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.34e-37;33!CL:0002057;3.34e-37;33!CL:0000576;1.56e-26;48!CL:0000473;5.94e-25;39!CL:0000234;5.94e-25;39!CL:0000766;5.44e-22;69!CL:0002087;9.30e-14;104!CL:0000094;5.98e-12;8!CL:0000738;7.30e-11;136!CL:0000081;8.37e-10;11!CL:0000763;1.93e-09;100!CL:0000624;6.66e-09;6!CL:0000791;1.64e-08;18!CL:0000789;1.64e-08;18!CL:0002419;1.64e-08;18!CL:0002393;2.00e-08;6!CL:0002397;2.00e-08;6!CL:0000988;9.44e-08;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.61e-53,136;CL:0000860,7.33e-51,42;CL:0002057,7.33e-51,42;CL:0000766,2.77e-46,72;CL:0000473,1.67e-42,48;CL:0000234,1.67e-42,48;CL:0000037,4.01e-41,168;CL:0002031,8.16e-41,120;CL:0000557,3.50e-39,67;CL:0002087,7.88e-39,115;CL:0000988,1.27e-38,177;CL:0002032,1.95e-36,161;CL:0000837,1.95e-36,161;CL:0000839,7.94e-35,66;CL:0002009,2.26e-34,61;CL:0002194,1.40e-32,59;CL:0000576,1.40e-32,59;CL:0000040,1.40e-32,59;CL:0000559,1.40e-32,59;CL:0000763,3.33e-29,108;CL:0000049,3.33e-29,108;CL:0000094,5.66e-12,8;CL:0002393,3.50e-11,9;CL:0002397,3.50e-11,9;CL:0000081,7.86e-10,11;CL:0000624,7.08e-09,6;CL:0000791,1.34e-08,18;CL:0000789,1.34e-08,18;CL:0002420,1.34e-08,18;CL:0002419,1.34e-08,18;CL:0000790,1.34e-08,18;CL:0000134,1.41e-08,354;CL:0002320,5.60e-08,361;CL:0000838,1.51e-07,52;CL:0000542,2.73e-07,53;CL:0000051,2.73e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;1.83e-36;42!CL:0000790;1.64e-08;18!CL:0000049;1.76e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.41e-22!102;UBERON:0003061!1.41e-22!102;UBERON:0002193!4.51e-21!112;UBERON:0002371!2.34e-16!80;UBERON:0007023!5.27e-15!115;UBERON:0001474!1.05e-13!86;UBERON:0002405!6.94e-11!115;UBERON:0004765!2.04e-10!101;UBERON:0001434!2.04e-10!101;UBERON:0003081!1.29e-09!216;UBERON:0000178!1.87e-07!15;UBERON:0000179!1.87e-07!15;UBERON:0000463!1.87e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.50e-12;15!UBERON:0000179;1.50e-12;15!UBERON:0000463;1.50e-12;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.13e-44,98;UBERON:0003061,5.13e-44,98;UBERON:0002193,3.09e-39,108;UBERON:0002371,2.14e-35,76;UBERON:0001474,1.64e-31,82;UBERON:0002405,1.95e-28,93;UBERON:0004765,3.68e-27,90;UBERON:0001434,9.70e-23,100;UBERON:0003081,7.52e-16,203;UBERON:0000178,1.48e-12,15;UBERON:0000179,1.48e-12,15;UBERON:0000463,1.48e-12,15;UBERON:0002204,5.42e-09,167;UBERON:0002384,7.24e-08,371 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.704772020479856,2.00146596706261,0.446961094427288,0,0,0,0,0,1.39560233594486,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0.251085279189606,0,0,0,34.6160563627036,10.747223146722,17.8038541813487,0,0,0,0,0.142169232487422,9.39521405871511,32.6857291033808,26.6724115135288,30.815543641651,0.223915474239924,0,0.515151135268373,17.4477886535478,17.3822934096852,20.1344770785887,18.1294648786434,19.7360586250476,26.944454267874,27.3307772706043,25.1037492398519,26.7224919774101,27.5796544589295,24.5284179761854,40.6279459783025,20.5184150101439,17.73889975376,13.7081325511502,22.3441241430759,22.4650318953266,27.4914964093588,16.8224163095225,19.3479747892983,22.1636870277001,30.4719700560013,28.369261234557,26.1585344578141,37.184802457998,35.9823213709939,33.6642709292931,13.3187890579341,26.5159897911047,23.4182166706254,9.29523259772544,14.2444880976579,11.5312255029607,14.3780647867514,15.6183968555167,12.054419002281,7.98035682475496,10.1447505371536,9.31587184199633,0,0.546138611262131,0.889509253863555,5.54749289336459,2.40237592221607,4.02326707968138,1.98313461835459,1.90810750907073,39.8449078376614,27.6001479004341,27.1413991968912,25.1125524300149,24.6623767711876,1.58030450865046,13.1795545976268,25.1526888159465,33.101841338921,1.33749196312542,30.3107707969239,36.4554810415745,37.0170783975031,1.6711568532776,16.203324911116,13.7351014641845,13.5401931882508,1.15282187753108,1.8208308658383,0.328875809207352,0.829050053357545,0.579606171470105,33.9576229641118,21.6708070752668,31.360657141493,0.453237370790265,33.7234034369691,26.1156858566799,20.7476147455992,0.637130828648193,0,0.950452044448374,1.80690142893327,0.511946444617674,2.49861453104692,1.65744076430812,0.821127996921047,25.2008429030916,24.6044980120827,21.7236605824198,0,0.670700859703636,0,0,0,0.289693037921647,0,0.486634870302636,0,0,0.175669571386252,3.79839318943367,0.364295288292542,0,0,0,0.132957960518865,5.96226560763355,6.29194401858141,5.94332002127304,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.208994966536811,0,0,0,0.402829317109147,0.760272105718513,0,0,1.62028389576352,0,0,0,1.53316637465883,0.949265659568129,0.183201743930407,80.3860546359986,85.3116581126316,0,0.496971951695318,0,0.264818361626438,0,0,0,1.06748995729705,0,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0,0,0,0,0.718618141816238,0,0,0,0,0.612975591598039,0.150238058906597,0,0.358779271377724,0,0,0.300091096084402,0.103052529238439,0.772921620136887,0.18611685633159,0.675105328965065,0.389748020644795,0.757301322732344,0.0920498986422993,0.161646056818812,0.710019185033229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0.269662616320329,0.196221465125346,0.38474715694639,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0.288732895522148,0.925971025153221,0.190254152234598,0,0,0,0,0,0.93733833986777,0,0,0.0895585227028483,0,0.383382679165211,0.492663237895943,1.93706554829097,90.1877302602359,48.424304348099,71.8319446196102,0,0,0,0,0.102827492703324,0.300343057843917,0,0.112131084345361,0,0.07333828582095,0.258543431515556,0,0,0.26593811658487,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0.502257091432126,0,0,0,0,0,0,0.179060963239896,0.112085143993527,21.0822913416062,18.9752265876375,22.5883743852357,0,0,0,2.01019518401218,1.27587750330633,41.195386317095,26.9245313283622,50.5586926391963,0,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,10.7519373583901,29.9842739137877,11.9534864739858,0.303127571446259,0,0.30239029332968,0.744323423456331,0.460385919864187,0,1.28139149255701,0.511707249066704,0.965123526861645,0,0,0.177561725313127,0.0821271560138091,0,0,0.120859449591622,0.200506470303285,0.368323955743585,0.229628896329213,0.182091168006717,0,0.451199612907412,0.308061348417659,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0.261435451024901,0,0,0.976135183992909,1.54561517471583,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0,0.170453254832202,0.0890320356467374,0,0,0,0.30347334256665,0,0.31481234683064,0,0.308033580176089,0,0,0.55597265731176,0.143124886741991,0,0,0,0,0,0,1.56989728039846,0,0.274537029736055,0,0.606547444719948,0,0.421258456238981,0,0,1.05650146756755,0.272999822815972,0.141405431953713,0,0.551365343546124,1.32687795048244,0,0,0,0.811641507850816,0,0.563391205064483,0,0.0982490410131212,0,0,0.422215270595328,0,0,0.349934720244983,0.577332676353072,0,0,1.12972560932135,0.43050537267123,0,0.886860307073351,0.459446800413919,17.2532187138938,22.1744790071289,15.3804740537024,11.6733569974317,20.5681136543097,18.8057260245888,19.9811631778102,19.0350042310625,0.106824071127473,0,0,0,0.28853842595289,0.0711418433484141,0,0.3991587428656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| ||
|short_description=p4@RARA | |||
}} | }} |
Latest revision as of 01:13, 20 September 2015
Short description: | p4@RARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RARA_5end |
Coexpression cluster: | NA |
Association with transcript: | 22bp_to_AK098172_5end |
EntrezGene: | RARA |
HGNC: | 9864 |
UniProt: | B3KUX3 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.13e-44 | 98 |
blood island | 5.13e-44 | 98 |
hemolymphoid system | 3.09e-39 | 108 |
bone marrow | 2.14e-35 | 76 |
bone element | 1.64e-31 | 82 |
immune system | 1.95e-28 | 93 |
skeletal element | 3.68e-27 | 90 |
skeletal system | 9.70e-23 | 100 |
lateral plate mesoderm | 7.52e-16 | 203 |
blood | 1.48e-12 | 15 |
haemolymphatic fluid | 1.48e-12 | 15 |
organism substance | 1.48e-12 | 15 |
musculoskeletal system | 5.42e-09 | 167 |
connective tissue | 7.24e-08 | 371 |