FFCP PHASE1:Hg19::chr16:67260701..67260716,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:67260701..67260716,- to FFCP PHASE1:Hg19::chr16:67260701..67260716,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26231 | |EntrezGene=26231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13605 | |HGNC=13605 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WV35 | |UniProt=Q8WV35 | ||
|association_with_transcript=4bp_to_ENST00000393992,NM_012163,uc002ese.2_5end | |||
|cluster_id=chr16:67260701..67260716,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_3_at_LRRC29_5end | |||
|id=chr16:67260701..67260716,- | |||
|ontology_enrichment_celltype=CL:0000763!2.67e-34!112;CL:0000049!2.67e-34!112;CL:0000766!1.88e-33!76;CL:0000557!6.02e-31!71;CL:0000839!5.48e-28!70;CL:0002009!1.54e-27!65;CL:0002194!2.56e-26!63;CL:0000576!2.56e-26!63;CL:0000040!2.56e-26!63;CL:0000559!2.56e-26!63;CL:0000988!3.77e-26!182;CL:0000037!8.97e-26!172;CL:0000566!8.97e-26!172;CL:0002032!1.95e-24!165;CL:0000837!1.95e-24!165;CL:0000738!1.58e-23!140;CL:0002057!5.90e-22!42;CL:0002320!1.11e-20!365;CL:0000134!2.87e-20!358;CL:0000048!7.29e-20!430;CL:0000723!4.53e-19!436;CL:0000860!7.29e-19!45;CL:0000034!1.25e-18!444;CL:0000219!2.72e-18!390;CL:0002031!1.83e-17!124;CL:0002087!9.83e-16!119;CL:0002371!3.75e-09!591;CL:0000144!1.55e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.59e-52;33!CL:0002057;8.59e-52;33!CL:0000473;1.14e-46;39!CL:0000234;1.14e-46;39!CL:0000576;6.76e-38;48!CL:0000766;7.25e-31;69!CL:0000763;9.70e-19;100!CL:0000738;2.35e-11;136!CL:0000840;3.75e-09;5!CL:0000451;8.53e-09;10!CL:0002087;2.74e-08;104!CL:0000990;2.99e-08;8!CL:0000775;4.83e-08;3!CL:0000094;1.18e-07;8!CL:0002619;1.61e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.74e-73,72;CL:0000557,7.32e-72,67;CL:0002009,4.07e-67,61;CL:0000839,5.07e-64,66;CL:0002194,1.98e-63,59;CL:0000576,1.98e-63,59;CL:0000040,1.98e-63,59;CL:0000559,1.98e-63,59;CL:0000763,2.10e-63,108;CL:0000049,2.10e-63,108;CL:0000473,2.39e-56,48;CL:0000234,2.39e-56,48;CL:0000860,1.40e-51,42;CL:0002057,1.40e-51,42;CL:0000738,5.41e-40,136;CL:0002032,1.31e-38,161;CL:0000837,1.31e-38,161;CL:0000037,8.60e-38,168;CL:0000988,5.32e-35,177;CL:0002031,5.61e-34,120;CL:0002087,6.25e-28,115;CL:0000134,1.04e-19,354;CL:0002320,5.93e-19,361;CL:0000219,2.71e-16,386;CL:0000048,4.73e-15,427;CL:0000723,1.43e-14,433;CL:0000034,5.99e-14,441;CL:0000840,1.67e-09,5;CL:0001029,1.67e-09,5;CL:0000451,3.10e-09,10;CL:0000990,1.14e-08,8;CL:0000775,4.74e-08,3;CL:0002619,8.81e-08,3;CL:0000094,1.11e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.31e-37;42!CL:0000049;1.97e-16;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.82e-29!102;UBERON:0003061!4.82e-29!102;UBERON:0002193!1.13e-27!112;UBERON:0002371!2.93e-27!80;UBERON:0001474!1.80e-25!86;UBERON:0004765!2.14e-22!101;UBERON:0001434!2.14e-22!101;UBERON:0002405!8.76e-21!115;UBERON:0002384!1.53e-20!375;UBERON:0002204!2.50e-15!167;UBERON:0003081!4.61e-14!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.91e-64,76;UBERON:0001474,1.63e-58,82;UBERON:0002390,2.65e-55,98;UBERON:0003061,2.65e-55,98;UBERON:0002405,4.29e-52,93;UBERON:0004765,4.90e-52,90;UBERON:0002193,8.40e-51,108;UBERON:0001434,2.17e-45,100;UBERON:0002204,7.40e-25,167;UBERON:0003081,7.43e-24,203;UBERON:0002384,8.83e-19,371;UBERON:0000926,4.26e-11,315;UBERON:0004120,4.26e-11,315;UBERON:0006603,4.26e-11,315 | |||
|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0.662794751455832,0,0,0,0,0,0.816002764977012,0.313454721478088,0,0.547497700291537,0,0.0764134057479513,0.328402357799783,0.314843125254717,0.393364276848904,0.383829398097213,0.928896739896456,0.919421224478927,0,0,0.619737604642413,0.710846162437108,0.587200878669695,0.553995408531877,1.00272223735071,1.08505435357926,2.01523926815932,1.94336199611388,2.83333124397605,4.36194716338694,4.53451132426571,2.91100873425379,3.95129362739664,5.34518254428373,3.09706370895104,2.01384674625505,2.30544635876191,1.6553756092201,2.41321976515633,2.5819387343353,0,4.51781614902251,6.5497476013883,2.69668181334102,2.14258724659632,3.20929027076094,1.27867425159808,1.64925650093358,3.78980949481101,2.55734850319616,3.77272010217159,5.10646702222026,3.73693349397345,2.76373531782418,1.5644487552606,1.08594422352558,0.605399502633369,2.20966581592539,1.58231193720442,1.05627643155971,0.637812899895131,0.628975936525128,1.12328631146495,1.20141514273205,0.64290234678832,0.855038231223746,0,0.182664153764634,1.75996244461323,0,0.889509253863555,0,0.400395987036012,0.574752439954483,0.661044872784862,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0.560508562981536,0.790152254325231,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,1.80719576192283,0,0.869079113764942,0,0.486634870302636,0,0.221729397462564,0.351339142772504,0.130979075497713,0,0,2.27183175558278,1.74129737299267,3.85578085504709,0.238490624305342,0.571994910780128,1.48583000531826,0.198762407366705,0,0,0.56530794192401,0,0.825354125820202,0.208994966536811,1.29208379584664,0.35576626268671,0.66944122552934,1.20848795132744,0,0.488124115096339,0,0,0.0892997282840798,0,0.225222960966644,0,0,0.183201743930407,6.58902087180316,3.87780264148325,0,1.98788780678127,0.25326102332916,0.662045904066094,0.573673241497627,0.354668382198357,0.560677600142307,0,0.24666754841716,0.622422070799533,0.67355336034844,0.490385709340376,0.151357427644931,0,0.234321431833797,0.936480230490962,0,0.149448680551801,0.352303495931295,0.323745888736263,0,1.02077085627447,0.368502951935304,0.516628905878827,0,0,0,0,0,0.250237039743928,0.277064115484183,0.438977620880838,0,0.600952235626387,0.113432183160021,0.89694817844431,0.213557388818567,0,1.80054657650641,0.618315175430633,1.03056216018252,0.37223371266318,0.506328996723799,0.487185025805993,1.26216887122057,0.368199594569197,0.484938170456436,1.77504796258307,1.10827308050404,1.18692414617341,0,0,0,0,0,0,0,0.504641701751257,0.36497735907583,0,0,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0.982827216677626,0,0,0,0.171567810298526,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,1.03993478527958,0,0.231860809950154,0,0,0,0.190254152234598,0,0,1.72351904261178,1.8720341211139,3.26988557035202,0,0.16798212819886,0.141775097242386,0.268675568108545,0,0.383382679165211,0.985326475791887,0.880484340132261,1.4512968087854,2.45003920808834,1.2624243342638,0.126995788584338,0.381988425558278,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0.224262168690721,0,0.22001485746285,0,0,0,0,0,0,0,1.0656887160644,0.285955987316295,1.08524321078289,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0.871533458600294,0.199945982364114,1.2162378064119,0.502257091432126,0,0.239624855491583,0,0,0.434343920002738,0,0,0.224170287987055,0.197030760201927,0.431255149719035,0.256686072559497,0,0,0,0.167516265334349,0.637938751653163,3.74503511973591,2.99161459204025,2.07207756718018,0.49076596687656,0,0,0.207970861530807,0.892144943985809,0.473107245101804,0.117141414992713,0.601892199455438,0,0,0,0.368738337083406,0.60818530127658,0.587403472388222,0.343143423810856,0.413536052245775,0.647142602455851,0.320182673410333,0,0,0,0,0.61384789315225,0.280660094433074,0.384417447767103,0.511707249066704,0,1.48418066444991,0.462629081407967,0,0.164254312027618,0.519254429183621,0.813472649219715,0.241718899183244,0,0,0.114814448164607,0.182091168006717,0.262248829918848,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,1.54227252690289,0.541892875087706,0.501689773854853,0,0,0.223874754722178,0.219259876645935,0,0,0,0,0.412164046590889,0.183138929636687,0.082509499920588,0,0.650060246036521,0,0.580024309752732,0,0.614014698904518,0.413509717453592,0.214840489736547,0.290033387828457,0.170453254832202,0.267096106940212,0.165284915360978,0.192190067365106,0.255225424989168,0.10115778085555,0.929691098594572,0.62962469366128,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0.429374660225974,0,0.316379424718726,0,0.255897791311334,0,0,0,0.539617372749944,0.274537029736055,0.471249609382746,0.202182481573316,0,0.421258456238981,0,0.731140468893853,1.05650146756755,0.409499734223957,0.141405431953713,0,1.10273068709225,0,0.438450885253763,0.578775534266688,0,0.4058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| ||
|short_description=p3@LRRC29 | |||
}} | }} |
Latest revision as of 10:17, 17 September 2015
Short description: | p3@LRRC29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRRC29_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 4bp_to_ENST00000393992, NM_012163, uc002ese.2_5end |
EntrezGene: | LRRC29 |
HGNC: | 13605 |
UniProt: | Q8WV35 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.91e-64 | 76 |
bone element | 1.63e-58 | 82 |
hematopoietic system | 2.65e-55 | 98 |
blood island | 2.65e-55 | 98 |
immune system | 4.29e-52 | 93 |
skeletal element | 4.90e-52 | 90 |
hemolymphoid system | 8.40e-51 | 108 |
skeletal system | 2.17e-45 | 100 |
musculoskeletal system | 7.40e-25 | 167 |
lateral plate mesoderm | 7.43e-24 | 203 |
connective tissue | 8.83e-19 | 371 |
mesoderm | 4.26e-11 | 315 |
mesoderm-derived structure | 4.26e-11 | 315 |
presumptive mesoderm | 4.26e-11 | 315 |