FFCP PHASE1:Hg19::chr15:45879534..45879558,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:45879534..45879558,+ to FFCP PHASE1:Hg19::chr15:45879534..45879558,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26258 | |EntrezGene=26258 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8549 | |HGNC=8549 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UL45,B3KY40 | |UniProt=Q9UL45,B3KY40 | ||
|association_with_transcript=117bp_to_ENST00000220531,NM_012388,uc001zvq.2,uc001zvr.2_5end | |||
|cluster_id=chr15:45879534..45879558,+ | |||
|coexpression_cluster_id=C3494 | |||
|description=CAGE_peak_3_at_PLDN_5end | |||
|id=chr15:45879534..45879558,+ | |||
|ontology_enrichment_celltype=CL:0000738!4.92e-30!140;CL:0000037!2.10e-28!172;CL:0000566!2.10e-28!172;CL:0002032!7.78e-26!165;CL:0000837!7.78e-26!165;CL:0000988!8.76e-26!182;CL:0000766!7.59e-25!76;CL:0002031!1.05e-24!124;CL:0000557!1.61e-22!71;CL:0000763!1.81e-22!112;CL:0000049!1.81e-22!112;CL:0000839!4.28e-22!70;CL:0002087!2.28e-21!119;CL:0002009!3.46e-19!65;CL:0002057!7.01e-19!42;CL:0002194!3.33e-18!63;CL:0000576!3.33e-18!63;CL:0000040!3.33e-18!63;CL:0000559!3.33e-18!63;CL:0000860!4.06e-16!45;CL:0000134!2.68e-12!358;CL:0002320!7.80e-12!365;CL:0000048!3.23e-10!430;CL:0000219!3.42e-10!390;CL:0000034!4.57e-09!444;CL:0000723!5.83e-09!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.40e-16;33!CL:0002057;4.40e-16;33!CL:0000473;3.70e-14;39!CL:0000234;3.70e-14;39!CL:0000576;2.65e-12;48!CL:0000766;8.93e-12;69!CL:0000738;1.52e-07;136!CL:0000763;8.69e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.27e-32,136;CL:0000037,2.28e-30,168;CL:0000988,2.90e-28,177;CL:0000766,5.25e-28,72;CL:0002032,9.92e-28,161;CL:0000837,9.92e-28,161;CL:0002031,6.28e-27,120;CL:0000557,1.29e-25,67;CL:0000839,3.51e-25,66;CL:0000763,1.06e-24,108;CL:0000049,1.06e-24,108;CL:0002087,1.94e-23,115;CL:0002009,3.94e-22,61;CL:0002194,4.19e-21,59;CL:0000576,4.19e-21,59;CL:0000040,4.19e-21,59;CL:0000559,4.19e-21,59;CL:0000473,1.04e-19,48;CL:0000234,1.04e-19,48;CL:0000860,7.01e-19,42;CL:0002057,7.01e-19,42;CL:0000134,2.66e-13,354;CL:0002320,8.26e-13,361;CL:0000048,3.34e-11,427;CL:0000219,4.55e-11,386;CL:0000034,5.54e-10,441;CL:0000723,7.13e-10,433 | |||
|ontology_enrichment_development_v019=CL:0002057;7.43e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.94e-25!102;UBERON:0003061!1.94e-25!102;UBERON:0002193!1.00e-21!112;UBERON:0002371!1.13e-20!80;UBERON:0001474!2.01e-20!86;UBERON:0004765!1.91e-18!101;UBERON:0001434!1.91e-18!101;UBERON:0002384!1.57e-11!375;UBERON:0002405!1.12e-10!115;UBERON:0002204!2.50e-10!167;UBERON:0000178!1.25e-08!15;UBERON:0000179!1.25e-08!15;UBERON:0000463!1.25e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.71e-09;15!UBERON:0000179;9.71e-09;15!UBERON:0000463;9.71e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.90e-28,98;UBERON:0003061,4.90e-28,98;UBERON:0002193,6.61e-24,108;UBERON:0002371,2.42e-23,76;UBERON:0001474,6.17e-23,82;UBERON:0004765,7.81e-21,90;UBERON:0001434,5.03e-20,100;UBERON:0002405,3.51e-17,93;UBERON:0002384,1.75e-12,371;UBERON:0002204,2.46e-11,167;UBERON:0000178,1.25e-08,15;UBERON:0000179,1.25e-08,15;UBERON:0000463,1.25e-08,15 | |||
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| ||
|short_description=p3@PLDN | |||
}} | }} |
Latest revision as of 20:39, 17 September 2015
Short description: | p3@PLDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLDN_5end |
Coexpression cluster: | C3494_CD14_Dendritic_Eosinophils_Mast_Whole_Neutrophils_CD4 |
Association with transcript: | 117bp_to_ENST00000220531, NM_012388, uc001zvq.2, uc001zvr.2_5end |
EntrezGene: | PLDN |
HGNC: | 8549 |
UniProt: | Q9UL45B3KY40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.27e-32 | 136 |
hematopoietic stem cell | 2.28e-30 | 168 |
hematopoietic cell | 2.90e-28 | 177 |
myeloid leukocyte | 5.25e-28 | 72 |
hematopoietic oligopotent progenitor cell | 9.92e-28 | 161 |
hematopoietic multipotent progenitor cell | 9.92e-28 | 161 |
hematopoietic lineage restricted progenitor cell | 6.28e-27 | 120 |
granulocyte monocyte progenitor cell | 1.29e-25 | 67 |
myeloid lineage restricted progenitor cell | 3.51e-25 | 66 |
myeloid cell | 1.06e-24 | 108 |
common myeloid progenitor | 1.06e-24 | 108 |
nongranular leukocyte | 1.94e-23 | 115 |
macrophage dendritic cell progenitor | 3.94e-22 | 61 |
monopoietic cell | 4.19e-21 | 59 |
monocyte | 4.19e-21 | 59 |
monoblast | 4.19e-21 | 59 |
promonocyte | 4.19e-21 | 59 |
defensive cell | 1.04e-19 | 48 |
phagocyte | 1.04e-19 | 48 |
classical monocyte | 7.01e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.01e-19 | 42 |
mesenchymal cell | 2.66e-13 | 354 |
connective tissue cell | 8.26e-13 | 361 |
multi fate stem cell | 3.34e-11 | 427 |
motile cell | 4.55e-11 | 386 |
stem cell | 5.54e-10 | 441 |
somatic stem cell | 7.13e-10 | 433 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.90e-28 | 98 |
blood island | 4.90e-28 | 98 |
hemolymphoid system | 6.61e-24 | 108 |
bone marrow | 2.42e-23 | 76 |
bone element | 6.17e-23 | 82 |
skeletal element | 7.81e-21 | 90 |
skeletal system | 5.03e-20 | 100 |
immune system | 3.51e-17 | 93 |
connective tissue | 1.75e-12 | 371 |
musculoskeletal system | 2.46e-11 | 167 |
blood | 1.25e-08 | 15 |
haemolymphatic fluid | 1.25e-08 | 15 |
organism substance | 1.25e-08 | 15 |