FFCP PHASE1:Hg19::chr14:91884129..91884141,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:91884129..91884141,- to FFCP PHASE1:Hg19::chr14:91884129..91884141,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=440193 | |EntrezGene=440193 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19967 | |HGNC=19967 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001xzl.3,uc010aty.2_5end | |||
|cluster_id=chr14:91884129..91884141,- | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_2_at_CCDC88C_5end | |||
|id=chr14:91884129..91884141,- | |||
|ontology_enrichment_celltype=CL:0000037!3.80e-34!172;CL:0000566!3.80e-34!172;CL:0000988!6.32e-32!182;CL:0002032!1.48e-30!165;CL:0000837!1.48e-30!165;CL:0000542!4.46e-28!53;CL:0000051!4.46e-28!53;CL:0000838!1.09e-27!52;CL:0000738!3.06e-27!140;CL:0002087!1.13e-24!119;CL:0002031!5.78e-21!124;CL:0000084!3.53e-16!25;CL:0000827!3.53e-16!25;CL:0000791!1.11e-13!18;CL:0000789!1.11e-13!18;CL:0002420!1.11e-13!18;CL:0002419!1.11e-13!18;CL:0000790!1.11e-13!18;CL:0000945!9.71e-11!24;CL:0000826!9.71e-11!24;CL:0000625!2.75e-09!11;CL:0000763!1.03e-08!112;CL:0000049!1.03e-08!112;CL:0000236!3.14e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.54e-23;25!CL:0000542;1.81e-22;53!CL:0000791;4.94e-20;18!CL:0000789;4.94e-20;18!CL:0002419;4.94e-20;18!CL:0000625;2.40e-13;11!CL:0000945;4.05e-13;24!CL:0002087;2.30e-10;104!CL:0000236;2.86e-09;13!CL:0000094;2.32e-08;8!CL:0000624;1.14e-07;6!CL:0000988;7.28e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.39e-40,53;CL:0000051,7.39e-40,53;CL:0000838,2.93e-39,52;CL:0000037,1.12e-38,168;CL:0000988,8.02e-38,177;CL:0000738,2.68e-35,136;CL:0002032,9.10e-34,161;CL:0000837,9.10e-34,161;CL:0002087,2.23e-31,115;CL:0002031,4.83e-25,120;CL:0000084,8.75e-24,25;CL:0000827,8.75e-24,25;CL:0000791,5.58e-20,18;CL:0000789,5.58e-20,18;CL:0002420,5.58e-20,18;CL:0002419,5.58e-20,18;CL:0000790,5.58e-20,18;CL:0000945,9.49e-14,24;CL:0000826,9.49e-14,24;CL:0000625,2.67e-13,11;CL:0002393,1.67e-08,9;CL:0002397,1.67e-08,9;CL:0000094,1.95e-08,8;CL:0000236,2.05e-08,14;CL:0000624,1.24e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;1.81e-22;53!CL:0000790;4.94e-20;18 | |||
|ontology_enrichment_disease=DOID:2531!2.38e-09!51;DOID:0060083!2.38e-09!51;DOID:1240!1.85e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.69e-08,51;DOID:0060083,2.69e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.20e-09!15;UBERON:0000179!1.20e-09!15;UBERON:0000463!1.20e-09!15;UBERON:0002390!1.37e-07!102;UBERON:0003061!1.37e-07!102;UBERON:0002193!2.13e-07!112;UBERON:0007023!4.52e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.92e-14;15!UBERON:0000179;5.92e-14;15!UBERON:0000463;5.92e-14;15!UBERON:0002390;2.13e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.62e-14,15;UBERON:0000179,7.62e-14,15;UBERON:0000463,7.62e-14,15;UBERON:0002193,3.36e-09,108;UBERON:0002390,4.95e-09,98;UBERON:0003061,4.95e-09,98 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0.547497700291537,0.502170558379211,2.44522898393444,1.80621296789881,1.02324015707783,5.11373559903575,7.67658796194425,4.64448369948228,0,0.6024118375565,0.369754010166788,1.85921281392724,1.9903692548239,1.46800219667424,7.75593571944628,5.61524452916397,3.47217393145363,0.671746422719773,2.26725566213286,2.06060454107349,1.16318591023652,1.88937971844405,0.970336244751265,0.464858073811369,0.411167888021826,1.54853185447552,0.28769239232215,1.0246428261164,0,2.06847408441971,1.29096936716765,4.06279459783025,0.752969358170419,0.272906150057846,0.224723484445085,0,0,0,0,0.398927315243264,0.426224750532694,0.580418477257168,1.13477044938228,0.622822248995575,0.502497330513487,0,0.868755378820466,0.605399502633369,0.368277635987565,0,2.32380814943136,1.70083439972035,2.09658645508376,2.3589012540764,1.20141514273205,2.4108838004562,6.84030584978997,2.78483348078726,3.83594722905731,1.75996244461323,3.27683166757279,5.33705552318133,2.98711155796555,4.00395987036012,4.59801951963587,3.30522436392431,3.81621501814146,2.27685187643779,4.69789751496751,4.20500550937752,2.64342657158052,1.12101712596307,1.31692042387539,6.29471264364266,7.46720449223413,13.7753004329671,5.01559486172034,8.14805666583976,3.31413464014313,5.84480185223734,3.89936599098108,5.30290633454707,4.2091439970888,7.58250818542044,4.73937882984998,5.72261129263464,4.60426132890293,6.63240042686036,4.05724320029073,9.04548035288569,6.1534390460634,7.31748666634838,3.85251765171725,8.81407135284419,3.77990190030893,6.57851199250707,12.7426165729639,16.2770863464105,15.207232711174,5.72185452495537,7.16725022464743,21.2382235138988,9.23431282971666,10.6746639599736,17.338179917327,11.2324882229073,9.84805946403033,0,0,0,0,0,0,0,0,0.472674085820339,0.665188192387692,0.966182642624386,1.11332214173056,0.364295288292542,1.85392221392215,0.324547393654683,0.522389211897802,0,2.8618874916641,1.71598473234038,2.22874500797739,0.596287222100115,0.860234595106124,0.347140501607594,1.69592382577203,0.419499436209906,0.825354125820202,0.626984899610432,1.03366703667732,1.77883131343355,0,0,0.760272105718513,1.22031028774085,0,0.81014194788176,0.625098097988558,1.12264686313085,1.0135033243499,0,0,0.183201743930407,7.9068250461638,3.87780264148325,0.872188104285069,0,0,0,0,0.709336764396714,0,0,0.24666754841716,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.243947412259191,0.132529768321485,0.348581828608555,0.207322110030741,0.504641701751257,1.09493207722749,0,0,0,0,0,0.118306800039844,0.168584690078102,0.964044119533928,0.110293972732394,0.653638332277218,0,0,0.392442930250692,0,1.4763109092493,1.40241773803446,0,0,0,0,0,3.09024169590255,0.860919069801795,0.343135620597051,0.109750285408626,1.1240175325762,0.100528972411631,0.462942225792648,0,0,0,0.695582429850461,0,0.433099343283221,0,0.190254152234598,2.37061319387782,1.71697232418975,0.492434012174795,0.234004265139238,1.0404181360211,0,0,0.141775097242386,0,0,0,0,0.704387472105808,1.4512968087854,0.576479813667846,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69004345584465,16.156522336558,15.9564405396043,10.7808150474989,0.76228387266739,3.90419561572865,0,1.84267891867784,1.27587750330633,2.24702107184155,2.99161459204025,4.14415513436035,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,9.51132920165282,9.27571063520052,11.2063935693617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0.200506470303285,0.460404944679482,0,0,0,0.451199612907412,0.385076685522074,0.784349769176855,1.46139224653261,0.527758144464379,0,0,0.431831832204279,4.62681758070868,0,0.501689773854853,0.509752546090077,0.831076008928724,0.447749509444357,0.219259876645935,0.522870902049801,0,0.656029291399411,0,0.206082023295445,0.27470839445503,0.660075999364704,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0.165284915360978,0.192190067365106,0.510450849978337,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0.0982490410131212,0,0,0,0,0,0,0.48111056362756,0.670302275535787,0,0.564862804660675,0.43050537267123,0,1.33029046061003,0.229723400206959,5.07447609232169,2.29391162142713,7.97506062043828,6.19402616190251,6.58179636937911,1.29694662238543,3.24018862342869,6.34500141035416,0.106824071127473,1.92495971052672,0.735120647943095,1.85803175125719,1.298422916788,2.56110636054291,1.91311527274587,1.59663497146253,1.53204296105893,1.48171507906718,0.973865820823666,1.12318871245384,1.82587743226554,1.72347885350326,0,0.846458889008016,1.605880751037,1.81619736471943,1.70338495076131,1.37402137902306,0,0,0.166849141711909,1.36771666781428,1.11362469558097,1.23087398947712,0.811367035427949,1.33228787199128,1.4098700508785,1.68426486367398,0,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|short_description=p2@CCDC88C | |||
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Latest revision as of 13:32, 16 September 2015
Short description: | p2@CCDC88C |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCDC88C_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | 0bp_to_uc001xzl.3, uc010aty.2_5end |
EntrezGene: | CCDC88C |
HGNC: | 19967 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.39e-40 | 53 |
common lymphoid progenitor | 7.39e-40 | 53 |
lymphoid lineage restricted progenitor cell | 2.93e-39 | 52 |
hematopoietic stem cell | 1.12e-38 | 168 |
hematopoietic cell | 8.02e-38 | 177 |
leukocyte | 2.68e-35 | 136 |
hematopoietic oligopotent progenitor cell | 9.10e-34 | 161 |
hematopoietic multipotent progenitor cell | 9.10e-34 | 161 |
nongranular leukocyte | 2.23e-31 | 115 |
hematopoietic lineage restricted progenitor cell | 4.83e-25 | 120 |
T cell | 8.75e-24 | 25 |
pro-T cell | 8.75e-24 | 25 |
mature alpha-beta T cell | 5.58e-20 | 18 |
alpha-beta T cell | 5.58e-20 | 18 |
immature T cell | 5.58e-20 | 18 |
mature T cell | 5.58e-20 | 18 |
immature alpha-beta T cell | 5.58e-20 | 18 |
lymphocyte of B lineage | 9.49e-14 | 24 |
pro-B cell | 9.49e-14 | 24 |
CD8-positive, alpha-beta T cell | 2.67e-13 | 11 |
intermediate monocyte | 1.67e-08 | 9 |
CD14-positive, CD16-positive monocyte | 1.67e-08 | 9 |
granulocyte | 1.95e-08 | 8 |
B cell | 2.05e-08 | 14 |
CD4-positive, alpha-beta T cell | 1.24e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 7.62e-14 | 15 |
haemolymphatic fluid | 7.62e-14 | 15 |
organism substance | 7.62e-14 | 15 |
hemolymphoid system | 3.36e-09 | 108 |
hematopoietic system | 4.95e-09 | 98 |
blood island | 4.95e-09 | 98 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.69e-08 | 51 |
immune system cancer | 2.69e-08 | 51 |