FFCP PHASE1:Hg19::chr14:35873947..35873965,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:35873947..35873965,- to FFCP PHASE1:Hg19::chr14:35873947..35873965,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4792 | |EntrezGene=4792 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7797 | |HGNC=7797 | ||
|TSSclassifier=strong | |||
|UniProt=P25963,G3V3I4 | |UniProt=P25963,G3V3I4 | ||
|association_with_transcript=0bp_to_ENST00000216797,ENST00000555629,ENST00000557140,ENST00000557459,NM_020529,uc001wtf.3,uc001wtg.3,uc010amo.2_5end | |||
|cluster_id=chr14:35873947..35873965,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_NFKBIA_5end | |||
|id=chr14:35873947..35873965,- | |||
|ontology_enrichment_celltype=CL:0000738!2.21e-34!140;CL:0000766!9.48e-28!76;CL:0002087!1.58e-25!119;CL:0002057!1.58e-25!42;CL:0002031!9.52e-25!124;CL:0000557!3.68e-24!71;CL:0000860!4.19e-24!45;CL:0002009!1.84e-22!65;CL:0002194!2.69e-21!63;CL:0000576!2.69e-21!63;CL:0000040!2.69e-21!63;CL:0000559!2.69e-21!63;CL:0000839!1.43e-20!70;CL:0000037!5.52e-16!172;CL:0000566!5.52e-16!172;CL:0000988!6.02e-16!182;CL:0002032!5.15e-14!165;CL:0000837!5.15e-14!165;CL:0000763!2.85e-09!112;CL:0000049!2.85e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.18e-19;33!CL:0002057;5.18e-19;33!CL:0000473;4.73e-17;39!CL:0000234;4.73e-17;39!CL:0000576;1.73e-14;48!CL:0000766;2.63e-13;69!CL:0002087;4.11e-09;104!CL:0000738;6.41e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.38e-35,136;CL:0000766,4.35e-29,72;CL:0000473,8.11e-27,48;CL:0000234,8.11e-27,48;CL:0002087,2.92e-26,115;CL:0000860,1.58e-25,42;CL:0002057,1.58e-25,42;CL:0002031,2.01e-25,120;CL:0000557,2.07e-25,67;CL:0002009,9.73e-24,61;CL:0002194,1.52e-22,59;CL:0000576,1.52e-22,59;CL:0000040,1.52e-22,59;CL:0000559,1.52e-22,59;CL:0000839,1.21e-21,66;CL:0000037,2.87e-16,168;CL:0000988,2.93e-16,177;CL:0002032,2.82e-14,161;CL:0000837,2.82e-14,161;CL:0000763,1.55e-09,108;CL:0000049,1.55e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.11e-27!112;UBERON:0002390!5.73e-26!102;UBERON:0003061!5.73e-26!102;UBERON:0002405!8.46e-24!115;UBERON:0002371!1.39e-21!80;UBERON:0003081!4.99e-21!216;UBERON:0001474!7.66e-18!86;UBERON:0004765!2.17e-13!101;UBERON:0001434!2.17e-13!101;UBERON:0000926!1.93e-11!448;UBERON:0004120!1.93e-11!448;UBERON:0006603!1.93e-11!448;UBERON:0002204!6.61e-10!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.48e-28,108;UBERON:0002390,7.34e-27,98;UBERON:0003061,7.34e-27,98;UBERON:0002405,1.17e-24,93;UBERON:0002371,1.49e-22,76;UBERON:0003081,1.09e-20,203;UBERON:0001474,1.42e-18,82;UBERON:0004765,2.42e-17,90;UBERON:0001434,1.10e-13,100;UBERON:0000926,6.32e-11,315;UBERON:0004120,6.32e-11,315;UBERON:0006603,6.32e-11,315;UBERON:0002204,5.02e-10,167 | |||
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| ||
|short_description=p1@NFKBIA | |||
}} | }} |
Latest revision as of 21:14, 19 September 2015
Short description: | p1@NFKBIA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NFKBIA_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000216797, ENST00000555629, ENST00000557140, ENST00000557459, NM_020529, uc001wtf.3, uc001wtg.3, uc010amo.2_5end |
EntrezGene: | NFKBIA |
HGNC: | 7797 |
UniProt: | P25963G3V3I4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.38e-35 | 136 |
myeloid leukocyte | 4.35e-29 | 72 |
defensive cell | 8.11e-27 | 48 |
phagocyte | 8.11e-27 | 48 |
nongranular leukocyte | 2.92e-26 | 115 |
classical monocyte | 1.58e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.58e-25 | 42 |
hematopoietic lineage restricted progenitor cell | 2.01e-25 | 120 |
granulocyte monocyte progenitor cell | 2.07e-25 | 67 |
macrophage dendritic cell progenitor | 9.73e-24 | 61 |
monopoietic cell | 1.52e-22 | 59 |
monocyte | 1.52e-22 | 59 |
monoblast | 1.52e-22 | 59 |
promonocyte | 1.52e-22 | 59 |
myeloid lineage restricted progenitor cell | 1.21e-21 | 66 |
hematopoietic stem cell | 2.87e-16 | 168 |
hematopoietic cell | 2.93e-16 | 177 |
hematopoietic oligopotent progenitor cell | 2.82e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.82e-14 | 161 |
myeloid cell | 1.55e-09 | 108 |
common myeloid progenitor | 1.55e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.48e-28 | 108 |
hematopoietic system | 7.34e-27 | 98 |
blood island | 7.34e-27 | 98 |
immune system | 1.17e-24 | 93 |
bone marrow | 1.49e-22 | 76 |
lateral plate mesoderm | 1.09e-20 | 203 |
bone element | 1.42e-18 | 82 |
skeletal element | 2.42e-17 | 90 |
skeletal system | 1.10e-13 | 100 |
mesoderm | 6.32e-11 | 315 |
mesoderm-derived structure | 6.32e-11 | 315 |
presumptive mesoderm | 6.32e-11 | 315 |
musculoskeletal system | 5.02e-10 | 167 |