FFCP PHASE1:Hg19::chr13:38443896..38443934,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:38443896..38443934,- to FFCP PHASE1:Hg19::chr13:38443896..38443934,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7223 | |EntrezGene=7223 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12336 | |HGNC=12336 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UBN4,Q3KR50 | |UniProt=Q9UBN4,Q3KR50 | ||
|association_with_transcript=4bp_to_ENST00000338947,ENST00000355779,ENST00000358477,ENST00000379673,ENST00000379681,NM_001135955,NM_001135956,NM_001135957,NM_001135958,NM_003306,NM_016179,uc001uws.2,uc001uwt.2,uc010abw.2,uc010abx.2,uc010aby.2,uc010tey.1_5end | |||
|cluster_id=chr13:38443896..38443934,- | |||
|description=CAGE_peak_1_at_TRPC4_5end | |||
|id=chr13:38443896..38443934,- | |||
|ontology_enrichment_celltype=CL:0000055!1.14e-17!180;CL:0000057!3.70e-11!75;CL:0000393!7.40e-10!60;CL:0000211!7.40e-10!60;CL:0000183!6.31e-09!59;CL:0000680!3.13e-08!57;CL:0000056!3.13e-08!57;CL:0000355!3.13e-08!57;CL:0000187!4.25e-08!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.74e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,3.30e-09,61;CL:0000211,3.30e-09,61;CL:0000057,1.50e-08,76;CL:0000680,6.64e-08,58;CL:0000056,6.64e-08,58;CL:0000355,6.64e-08,58;CL:0000187,1.33e-07,55;CL:0002620,3.64e-07,23;CL:0000359,6.72e-07,32;CL:0000192,6.75e-07,43;CL:0000514,6.75e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!4.22e-21!59;UBERON:0005743!3.17e-20!86;UBERON:0001017!3.82e-19!82;UBERON:0001049!6.67e-19!57;UBERON:0005068!6.67e-19!57;UBERON:0006241!6.67e-19!57;UBERON:0007135!6.67e-19!57;UBERON:0000073!9.55e-19!94;UBERON:0001016!9.55e-19!94;UBERON:0000955!2.81e-17!69;UBERON:0006238!2.81e-17!69;UBERON:0002346!3.51e-17!90;UBERON:0000025!4.52e-17!194;UBERON:0003075!2.55e-16!86;UBERON:0007284!2.55e-16!86;UBERON:0000475!9.60e-16!365;UBERON:0003080!1.88e-15!42;UBERON:0002780!2.05e-15!41;UBERON:0001890!2.05e-15!41;UBERON:0006240!2.05e-15!41;UBERON:0000477!8.64e-15!286;UBERON:0000119!9.64e-15!312;UBERON:0002020!1.82e-14!34;UBERON:0003528!1.82e-14!34;UBERON:0000483!5.95e-14!309;UBERON:0001893!6.82e-14!34;UBERON:0002791!1.40e-13!33;UBERON:0004111!1.48e-13!241;UBERON:0001869!2.17e-13!32;UBERON:0007023!2.20e-13!115;UBERON:0003056!3.26e-13!61;UBERON:0000481!8.67e-13!347;UBERON:0000956!8.95e-11!25;UBERON:0000203!8.95e-11!25;UBERON:0000924!4.39e-10!173;UBERON:0006601!4.39e-10!173;UBERON:0000033!4.94e-10!123;UBERON:0002619!5.77e-10!22;UBERON:0000468!1.07e-09!659;UBERON:0004121!2.07e-09!169;UBERON:0000153!4.84e-09!129;UBERON:0007811!4.84e-09!129;UBERON:0001950!7.43e-09!20;UBERON:0002385!1.07e-07!63;UBERON:0001015!1.07e-07!63;UBERON:0000383!1.07e-07!63;UBERON:0001134!3.13e-07!61;UBERON:0002036!3.13e-07!61;UBERON:0003082!3.13e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;2.26e-14;34!UBERON:0002020;2.26e-14;34!UBERON:0001893;1.27e-13;34!UBERON:0002791;1.43e-13;32!UBERON:0001869;1.73e-13;32!UBERON:0000956;1.41e-11;25!UBERON:0000203;1.41e-11;25!UBERON:0002780;1.62e-11;41!UBERON:0001890;1.62e-11;41!UBERON:0002619;2.27e-11;22!UBERON:0000073;2.59e-10;53!UBERON:0002616;2.59e-10;53!UBERON:0001950;5.03e-10;20!UBERON:0000955;3.93e-08;68!UBERON:0001017;4.25e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.97e-17,56;UBERON:0005068,1.97e-17,56;UBERON:0006241,1.97e-17,56;UBERON:0007135,1.97e-17,56;UBERON:0001017,3.92e-17,81;UBERON:0000073,3.95e-17,53;UBERON:0002616,3.95e-17,53;UBERON:0000955,1.01e-16,68;UBERON:0006238,1.01e-16,68;UBERON:0002346,2.32e-16,86;UBERON:0003528,4.69e-16,34;UBERON:0002020,4.69e-16,34;UBERON:0001893,2.27e-15,34;UBERON:0002780,2.41e-15,41;UBERON:0001890,2.41e-15,41;UBERON:0003080,2.41e-15,41;UBERON:0006240,2.41e-15,41;UBERON:0001016,2.86e-15,89;UBERON:0003075,3.34e-15,82;UBERON:0007284,3.34e-15,82;UBERON:0000025,7.95e-15,192;UBERON:0002791,8.07e-15,32;UBERON:0010314,8.23e-15,132;UBERON:0001869,9.97e-15,32;UBERON:0004111,5.55e-13,240;UBERON:0003056,1.36e-12,61;UBERON:0000119,5.16e-12,309;UBERON:0000956,1.84e-11,25;UBERON:0000203,1.84e-11,25;UBERON:0002619,2.89e-11,22;UBERON:0000483,3.28e-11,306;UBERON:0010371,2.02e-10,104;UBERON:0001950,6.80e-10,20;UBERON:0004121,3.82e-09,171;UBERON:0000924,3.82e-09,171;UBERON:0006601,3.82e-09,171;UBERON:0007023,4.82e-09,114;UBERON:0002385,2.68e-07,64;UBERON:0001015,2.68e-07,64;UBERON:0000383,2.68e-07,64;UBERON:0001134,9.07e-07,62;UBERON:0002036,9.07e-07,62;UBERON:0003082,9.07e-07,62 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0,0,1.34088328328186,0,0,0,0.261185628199839,0.491467873003018,0,0,0,0.37129905888014,0.331397375727916,6.05092631806598,5.42425075221579,2.92124036154949,3.90346239032406,0.123121058076788,0.408001382488506,0.313454721478088,3.43483184557268,0.821246550437305,3.51519390865448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,11.4019146149618,10.9961803185436,0.361439152384566,1.00267582127178,0.289693037921647,0,0,0.472674085820339,1.33037638477538,1.58102614247627,3.27447688744282,0,0,0,0,0,0,0,0,0,0,0,0,1.67799774483962,0,0,0,1.06729878806013,0.33472061276467,0,0,0,0,0,0.625098097988558,0.44905874525234,0.112611480483322,0,0,0,0,0,0,10.4364109856017,0,7.28250494472703,0.860509862246441,0.709336764396714,12.8955848032731,5.33744978648525,5.42668606517752,4.66816553099649,12.528092502481,6.70193802765181,7.11379909931178,4.03323147135999,0.468642863667593,0,0,0,0,0.161872944368132,0.140450806702248,0,0.368502951935304,0,1.18800285728205,3.70900393917835,1.82032272387605,1.43723628363248,0.336672227908132,0.375355559615893,0,2.63386572528503,4.29082914118628,5.10809400282429,9.52830338544177,26.011497174885,4.05759038755278,5.08636562782948,21.606558918077,5.77094163735258,32.7203485857949,16.7505170698431,17.3839622208504,7.69752340773469,29.5347515865614,6.53554280360325,3.71785930683267,62.4816882829241,27.0015623250076,5.76506013855658,0,0,0,10.6117124332748,21.8674117730451,7.55260628651869,8.70752862129112,8.83122978064699,25.1834377762323,1.56449532329816,1.92972281457866,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0.738155454624648,5.60967095213783,4.5273141246454,4.41026134156626,0,0,0,0,0,3.08822058537346,0,0,0,0,0,0,4.3299402607582,0.463721619900307,9.62751292733738,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,1.00917975910825,6.10344096366592,3.44689943358465,2.97324946242889,7.15312891703765,0.845302752556,12.7650295960738,9.36066932202295,0.257207374262142,1.41849132023278,0.532844358032199,12.8680194292333,0,0,2.93162565864362,11.3725423597615,0,0,5.22920075160176,1.19967589418468,0,0,0,9.34536936417172,1.14861935834114,0,2.02693829334611,2.67119219315498,0,0,0,0,0,0,0,1.54657762555539,0.502548796003046,1.91381625495949,0,0,0,0.49076596687656,3.50119364741774,0.271265023699736,1.03985430765404,0.892144943985809,0.788512075169673,0,0.300946099727719,0,1.03473071292505,9.29915837949611,1.10621501125022,9.20966313361678,4.50342662164303,6.17658162859541,0,0,0,0,0,0,0.248107807818777,0.767309866440312,0.280660094433074,0.512556597022804,0.511707249066704,0.321707842287215,0,1.3878872442239,0.887808626565635,1.72467027628999,0.519254429183621,2.90525946149898,0,0,0,4.36294903025506,2.36718518408732,1.96686622439136,1.35359883872224,0.385076685522074,1.56869953835371,0,1.16106791782163,0,0,1.29549549661284,0,2.70946437543853,1.00337954770971,0.254876273045038,0,2.0148727924996,0,0,6.41125312790973,0.656029291399411,3.57916234130733,2.47298427954533,0,0,1.14853107599234,0,0,0.193341436584244,0.462145851343933,1.07452572308291,2.20538515975249,0.966782203814463,1.16013355131383,1.36362603865761,0.178064071293475,0,0,0,0,0,0.62962469366128,0,3.69640296211307,3.72614221221915,0,1.8532421910392,5.58187058293766,7.81532575655301,20.2482831819985,10.6752908597342,0.255897791311334,0.42793898803392,0,0,2.69808686374972,7.68703683260953,5.65499531259295,3.841467149893,0,0,0.975267478179181,4.38684281336312,0,10.1009934441909,0.707027159768564,0,0,1.99031692572366,3.94605796728386,0,0,14.0008160104266,6.50629346009475,3.94373843545138,4.87598597493775,1.27723753317057,10.7001315444375,1.41904425628239,0.844430541190656,3.62224382255892,0,0,0,0,0,2.63602642174982,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,1.31857361344705,0,0,0,0,0.296964680832639,0,2.98244294329889,5.62677665642051,0.111308705022906,0,0,2.78947183551498,1.38141957765574,1.25966373927138,0,0,33.5922754674752,0.359473404589307,0.179021174675609,0,3.74844941420348,0,3.33410970433911,0,0.834912883456661,3.99227596002388,0,0,0.724999575434793,0,0.254253650292766,0,0,0,0,6.20018970069687,3.37670028151142,4.5774520895125,2.87506075821184,1.18219047581419,0.658156191461918,0,0,5.00176680274681,3.76008784295104,0,0,0,0.638002319463839,1.92354946143911,4.26427820814908,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06149077404007,0.611030144933625,0,0,0,1.07841812769083,0,0.702793337176017,0,0.391329237864179,0,7.89168805698781,2.41981432097328,12.5489832268501,0.63186579628488,1.05226393590145,0.72581733978073,0,0,0,0,0,0,0,0,0,2.79562669187248,0,0,0,0,0.387956065953678,0,0.677942222341597,0,0.794858446811959,1.89932387867636,0,0.480952921509202,4.0556069000477,0,0,0,0,0,0,0,0,0.209205692624666,0,4.6232094384243,3.00210144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| ||
|short_description=p1@TRPC4 | |||
}} | }} |
Latest revision as of 07:15, 17 September 2015
Short description: | p1@TRPC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRPC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_ENST00000338947, ENST00000355779, ENST00000358477, ENST00000379673, ENST00000379681, NM_001135955, NM_001135956, NM_001135957, NM_001135958, NM_003306, NM_016179, uc001uws.2, uc001uwt.2, uc010abw.2, uc010abx.2, uc010aby.2, uc010tey.1_5end |
EntrezGene: | TRPC4 |
HGNC: | 12336 |
UniProt: | Q9UBN4Q3KR50 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 3.30e-09 | 61 |
electrically active cell | 3.30e-09 | 61 |
fibroblast | 1.50e-08 | 76 |
muscle precursor cell | 6.64e-08 | 58 |
myoblast | 6.64e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.64e-08 | 58 |
muscle cell | 1.33e-07 | 55 |
skin fibroblast | 3.64e-07 | 23 |
vascular associated smooth muscle cell | 6.72e-07 | 32 |
smooth muscle cell | 6.75e-07 | 43 |
smooth muscle myoblast | 6.75e-07 | 43 |