FFCP PHASE1:Hg19::chr12:8720529..8720535,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:8720529..8720535,- to FFCP PHASE1:Hg19::chr12:8720529..8720535,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-320bp_to_ENST00000542819_5end | |||
|cluster_id=chr12:8720529..8720535,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_ENST00000542819_5end | |||
|id=chr12:8720529..8720535,- | |||
|ontology_enrichment_celltype=CL:0000860!4.47e-58!45;CL:0002057!8.81e-57!42;CL:0000766!1.81e-50!76;CL:0002194!1.68e-41!63;CL:0000576!1.68e-41!63;CL:0000040!1.68e-41!63;CL:0000559!1.68e-41!63;CL:0002009!7.49e-40!65;CL:0000839!3.86e-36!70;CL:0000557!1.85e-35!71;CL:0000738!1.41e-32!140;CL:0000763!1.41e-29!112;CL:0000049!1.41e-29!112;CL:0002087!1.06e-27!119;CL:0000037!1.91e-23!172;CL:0000566!1.91e-23!172;CL:0002031!4.51e-22!124;CL:0002032!1.13e-21!165;CL:0000837!1.13e-21!165;CL:0000988!2.87e-21!182;CL:0000094!1.01e-16!8;CL:0000081!1.15e-11!11;CL:0002393!5.89e-10!9;CL:0002397!5.89e-10!9;CL:0000775!7.00e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.42e-35;33!CL:0002057;5.42e-35;33!CL:0000473;5.09e-24;39!CL:0000234;5.09e-24;39!CL:0000576;1.16e-23;48!CL:0000094;3.30e-21;8!CL:0000766;1.79e-16;69!CL:0000775;1.84e-15;3!CL:0000081;3.02e-15;11!CL:0000771;7.51e-11;2!CL:0000763;2.01e-08;100!CL:0002087;8.61e-08;104!CL:0000738;4.35e-07;136!CL:0002393;4.81e-07;6!CL:0002397;4.81e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.10e-41,42;CL:0002057,3.10e-41,42;CL:0000766,1.56e-38,72;CL:0000473,1.85e-35,48;CL:0000234,1.85e-35,48;CL:0002194,2.24e-27,59;CL:0000576,2.24e-27,59;CL:0000040,2.24e-27,59;CL:0000559,2.24e-27,59;CL:0002009,2.47e-26,61;CL:0000738,2.81e-24,136;CL:0000839,5.33e-24,66;CL:0000763,1.01e-23,108;CL:0000049,1.01e-23,108;CL:0000557,1.42e-23,67;CL:0000094,3.74e-21,8;CL:0000037,2.34e-18,168;CL:0002087,9.79e-18,115;CL:0000988,4.46e-17,177;CL:0002032,1.55e-16,161;CL:0000837,1.55e-16,161;CL:0000775,1.85e-15,3;CL:0000081,3.31e-15,11;CL:0002031,9.08e-14,120;CL:0000771,7.53e-11,2 | |||
|ontology_enrichment_development_v019=CL:0002057;7.00e-29;42!CL:0000049;5.13e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.58e-48!102;UBERON:0003061!7.58e-48!102;UBERON:0002193!1.22e-45!112;UBERON:0002371!4.13e-30!80;UBERON:0001474!3.58e-27!86;UBERON:0002405!8.68e-25!115;UBERON:0004765!2.24e-21!101;UBERON:0001434!2.24e-21!101;UBERON:0000178!5.24e-19!15;UBERON:0000179!5.24e-19!15;UBERON:0000463!5.24e-19!15;UBERON:0003081!1.43e-16!216;UBERON:0007023!8.51e-13!115;UBERON:0002204!1.25e-08!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.24e-35;15!UBERON:0000179;1.24e-35;15!UBERON:0000463;1.24e-35;15!UBERON:0002390;1.63e-20;32!UBERON:0002193;5.73e-11;42!UBERON:0002106;6.16e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.11e-45,98;UBERON:0003061,3.11e-45,98;UBERON:0002193,2.13e-40,108;UBERON:0000178,1.15e-35,15;UBERON:0000179,1.15e-35,15;UBERON:0000463,1.15e-35,15;UBERON:0002371,3.02e-20,76;UBERON:0002405,1.97e-19,93;UBERON:0001474,1.98e-18,82;UBERON:0003081,4.33e-18,203;UBERON:0004765,2.20e-16,90;UBERON:0001434,2.76e-14,100;UBERON:0000926,4.83e-09,315;UBERON:0004120,4.83e-09,315;UBERON:0006603,4.83e-09,315;UBERON:0002106,4.43e-07,3;UBERON:0004854,4.43e-07,3;UBERON:0009034,4.43e-07,3;UBERON:0002095,4.43e-07,3;UBERON:0004782,4.43e-07,3;UBERON:0003281,4.43e-07,3;UBERON:0009664,4.43e-07,3;UBERON:0002296,4.43e-07,3;UBERON:0005602,4.43e-07,3;UBERON:0001179,4.43e-07,3;UBERON:0006293,4.43e-07,3;UBERON:0002204,9.17e-07,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,1.23852898652861,0,0,0,0,0,0,1.10799081706375,0.802177789880567,1.73608696572681,0,0,0,0.290796477559129,0.377875943688809,1.4555043671269,1.16214518452842,0.411167888021826,1.85823822537062,0,0.256160706529101,1.6553756092201,1.72372840368309,0.645484683583826,2.70852973188684,0.376484679085209,0.272906150057846,1.57306439111559,2.44867113896722,1.28371610830437,1.27867425159808,0,1.19678194572979,0.852449501065388,1.45104619314292,0.56738522469114,4.35975574296902,0,1.0429658368404,0.434377689410233,0.605399502633369,1.84138817993782,4.74693581161327,0.211255286311942,0.425208599930087,1.04829322754188,2.92054440980887,3.30389164251314,0.803627933485401,0.570025487482497,0,0,0,1.09227722252426,0,0.426730222566507,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,1.18388626022008,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,88.2928796821624,112.456276603014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,133.323250262598,92.7400523532477,99.0453077112125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,1.50999940573032,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,19.2830091508224,21.4098417999865,23.9251818613148,36.9259251959573,28.7953591160336,21.3996192693597,11.3406601820004,18.2418790547682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,1.20258735531594,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0.292357268344742,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0.446342914883745,0.53746777989381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0.13223260174269,0,0,1.60181118851542,0.471612915298998,1.24271716604159,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41724414505312,1.93373663920732,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0.434523000071005,0,0.0636471582781649,0,0,0,0.0673520530145875,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,1.23852898652861,0,0,0,0,0,0,1.10799081706375,0.802177789880567,1.73608696572681,0,0,0,0.290796477559129,0.377875943688809,1.4555043671269,1.16214518452842,0.411167888021826,1.85823822537062,0,0.256160706529101,1.6553756092201,1.72372840368309,0.645484683583826,2.70852973188684,0.376484679085209,0.272906150057846,1.57306439111559,2.44867113896722,1.28371610830437,1.27867425159808,0,1.19678194572979,0.852449501065388,1.45104619314292,0.56738522469114,4.35975574296902,0,1.0429658368404,0.434377689410233,0.605399502633369,1.84138817993782,4.74693581161327,0.211255286311942,0.425208599930087,1.04829322754188,2.92054440980887,3.30389164251314,0.803627933485401,0.570025487482497,0,0,0,1.09227722252426,0,0.426730222566507,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,1.18388626022008,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,88.2928796821624,112.456276603014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,133.323250262598,92.7400523532477,99.0453077112125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,1.50999940573032,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,19.2830091508224,21.4098417999865,23.9251818613148,36.9259251959573,28.7953591160336,21.3996192693597,11.3406601820004,18.2418790547682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,1.20258735531594,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0.292357268344742,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0.446342914883745,0.53746777989381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0.13223260174269,0,0,1.60181118851542,0.471612915298998,1.24271716604159,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41724414505312,1.93373663920732,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0.434523000071005,0,0.0636471582781649,0,0,0,0.0673520530145875,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@ENST00000542819 | |||
}} | }} |
Latest revision as of 13:07, 24 July 2015
Short description: | p1@ENST00000542819 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000542819_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -320bp_to_ENST00000542819_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.10e-41 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.10e-41 | 42 |
myeloid leukocyte | 1.56e-38 | 72 |
defensive cell | 1.85e-35 | 48 |
phagocyte | 1.85e-35 | 48 |
monopoietic cell | 2.24e-27 | 59 |
monocyte | 2.24e-27 | 59 |
monoblast | 2.24e-27 | 59 |
promonocyte | 2.24e-27 | 59 |
macrophage dendritic cell progenitor | 2.47e-26 | 61 |
leukocyte | 2.81e-24 | 136 |
myeloid lineage restricted progenitor cell | 5.33e-24 | 66 |
myeloid cell | 1.01e-23 | 108 |
common myeloid progenitor | 1.01e-23 | 108 |
granulocyte monocyte progenitor cell | 1.42e-23 | 67 |
granulocyte | 3.74e-21 | 8 |
hematopoietic stem cell | 2.34e-18 | 168 |
nongranular leukocyte | 9.79e-18 | 115 |
hematopoietic cell | 4.46e-17 | 177 |
hematopoietic oligopotent progenitor cell | 1.55e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.55e-16 | 161 |
neutrophil | 1.85e-15 | 3 |
blood cell | 3.31e-15 | 11 |
hematopoietic lineage restricted progenitor cell | 9.08e-14 | 120 |
eosinophil | 7.53e-11 | 2 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.11e-45 | 98 |
blood island | 3.11e-45 | 98 |
hemolymphoid system | 2.13e-40 | 108 |
blood | 1.15e-35 | 15 |
haemolymphatic fluid | 1.15e-35 | 15 |
organism substance | 1.15e-35 | 15 |
bone marrow | 3.02e-20 | 76 |
immune system | 1.97e-19 | 93 |
bone element | 1.98e-18 | 82 |
lateral plate mesoderm | 4.33e-18 | 203 |
skeletal element | 2.20e-16 | 90 |
skeletal system | 2.76e-14 | 100 |
mesoderm | 4.83e-09 | 315 |
mesoderm-derived structure | 4.83e-09 | 315 |
presumptive mesoderm | 4.83e-09 | 315 |
spleen | 4.43e-07 | 3 |
gastrointestinal system mesentery | 4.43e-07 | 3 |
stomach region | 4.43e-07 | 3 |
mesentery | 4.43e-07 | 3 |
gastrointestinal system serosa | 4.43e-07 | 3 |
mesentery of stomach | 4.43e-07 | 3 |
gut mesentery | 4.43e-07 | 3 |
dorsal mesentery | 4.43e-07 | 3 |
dorsal mesogastrium | 4.43e-07 | 3 |
peritoneal cavity | 4.43e-07 | 3 |
spleen primordium | 4.43e-07 | 3 |
musculoskeletal system | 9.17e-07 | 167 |