FFCP PHASE1:Hg19::chr12:57556203..57556225,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:57556203..57556225,+ to FFCP PHASE1:Hg19::chr12:57556203..57556225,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:57556203..57556225,+ | |||
|coexpression_cluster_id=C1365 | |||
|description=CAGE_peak_at_chr12:57556203..57556225,+ | |||
|id=chr12:57556203..57556225,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.39e-16!180;CL:0000057!1.94e-14!75;CL:0000048!2.49e-09!430;CL:0000723!1.69e-08!436;CL:0000034!4.63e-08!444;CL:0002320!2.36e-07!365;CL:0002620!5.44e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.48e-08;12!CL:0000134;2.11e-08;55!CL:0002620;2.79e-08;23!CL:0000048;3.22e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.87e-16,76;CL:0002320,1.37e-14,361;CL:0000048,1.96e-14,427;CL:0000723,1.26e-13,433;CL:0000034,1.35e-12,441;CL:0000134,9.21e-12,354;CL:0000219,7.34e-09,386;CL:0002620,1.49e-08,23;CL:0002334,1.66e-08,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.15e-14!659;UBERON:0000467!3.22e-09!625;UBERON:0000480!4.94e-09!626;UBERON:0002204!3.43e-08!167;UBERON:0000062!4.43e-08!511;UBERON:0000922!1.04e-07!612;UBERON:0002050!3.09e-07!605;UBERON:0005423!3.09e-07!605;UBERON:0002384!3.84e-07!375;UBERON:0000923!4.53e-07!604;UBERON:0005291!4.53e-07!604;UBERON:0006598!4.53e-07!604;UBERON:0002532!4.53e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.70e-08;198!UBERON:0004457;8.02e-08;9!UBERON:0000042;8.02e-08;9!UBERON:0001013;3.58e-07;14!UBERON:0003688;3.94e-07;6!UBERON:0002358;3.94e-07;6!UBERON:0003684;3.94e-07;6!UBERON:0001178;3.94e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.29e-14,371;UBERON:0002199,2.03e-08,46;UBERON:0002416,2.03e-08,46;UBERON:0000926,2.32e-07,315;UBERON:0004120,2.32e-07,315;UBERON:0006603,2.32e-07,315;UBERON:0002204,3.41e-07,167;UBERON:0001013,5.51e-07,14;UBERON:0003688,5.94e-07,6;UBERON:0002358,5.94e-07,6;UBERON:0003684,5.94e-07,6;UBERON:0001178,5.94e-07,6 | |||
|phase1_expression=2.72517568905835,11.1332272423311,4.08767771878316,10.007329835313,7.15137751083661,5.23403114460221,10.1319951267324,0.631719873426831,6.52964070499596,0.245733936501509,0,0.218441372130172,0.527533956456907,2.10402800032079,1.98838425436749,2.6893005858071,4.82155622419182,2.19093027116212,1.95173119516203,0.369363174230364,1.63200552995402,2.82109249330279,0,0.136874425072884,0,0,0,0,0,0,0.464448369948228,0.919421224478927,0,0,0,0,0,0,2.4065333696417,0.651032612147555,1.11957737119962,1.29557466407592,0.77272670290256,2.03557534291391,1.13362783106643,1.21292030593908,0.929716147622738,1.23350366406548,1.23882548358041,2.01384674625505,0.256160706529101,0.236482229888585,2.06847408441971,0,1.35426486594342,2.07066573496865,1.36453075028923,0.224723484445085,3.06083892370903,0,0,1.31940520074686,0.797854630486527,0,3.19230162491442,1.13477044938228,0.622822248995575,1.7587406567972,1.0429658368404,0.217188844705117,0.605399502633369,0.736555271975129,0,0.211255286311942,0.425208599930087,0.838634582033504,0.786300418025466,0.300353785683013,0.16072558669708,1.14005097496499,0.39783335439818,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,0.12786256184353,0.722878304769133,3.00802746381534,4.92478164466801,0.795285947051099,10.705967146658,0.472674085820339,1.10864698731282,0.175669571386252,0.589405839739707,0,0.370784442784429,0,0.174129737299267,1.06366368415092,0.476981248610684,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,2.40597972162702,2.25095607382472,22.0864197976587,2.12801029319014,1.12135520028461,2.1349799145941,0.49333509683432,0.311211035399766,0.538842688278752,0.490385709340376,1.96764655938411,2.88087962239999,0.468642863667593,1.87296046098192,0,1.49448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0.204154171254893,1.22834317311768,1.96318984233954,3.56400857184616,6.67620709052104,0,0.718618141816238,0.841680569770331,0.750711119231785,0.277064115484183,1.31693286264251,2.45190236639216,1.95309476578576,0.226864366320042,8.79009214875424,4.91181994282705,1.90738711043606,3.90118424909723,2.88547081867629,4.89517026086695,2.41951913231067,2.86919764810153,1.75386609290158,7.32057945307932,2.11714766877288,6.14255015911485,9.23024940543197,1.10827308050404,1.18692414617341,0,0.272746120590835,0,0.365921118388786,0.132529768321485,0.69716365721711,0.10366105501537,0.504641701751257,0.36497735907583,6.25798129319264,4.5026865673502,1.38134921352481,5.57241513638375,1.44375896333917,0.118306800039844,0,0,0.441175890929576,0,0.237270619111097,0.269662616320329,0,0,0,0,0,4.41026134156626,5.07020139287323,4.91413608338813,1.77236972004421,0,0.368965315629341,0.686271241194102,0.109750285408626,0,0,0.0925884451585296,0.651616610620649,0,1.44331342025273,0.231860809950154,0,0,0,0,0,0,0.492434012174795,1.17002132569619,1.18904929830983,0,0.335964256397719,0,0.0895585227028483,0,0,0,0,0,0,0,0.253991577168676,0,1.17217447210047,0,0.205654985406647,0.300343057843917,0.857479297891735,0.448524337381443,1.30788020649984,0.1466765716419,0.517086863031111,7.15312891703765,0,1.06375246633948,1.04007436911366,0.257207374262142,1.41849132023278,0.266422179016099,0.714889968290738,2.71310802695722,1.64648067356154,0.325736184293735,2.13235169245527,0.791951872933429,1.50719688529793,0,1.3996218765488,1.2162378064119,2.51128545716063,8.43335757932127,1.91699884393266,4.59447743336456,0,2.31650090668127,3.49309748335652,1.43248770591916,0,0,0,0.128343036279748,0.508189248444927,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,3.55805325985506,6.5022167737758,4.06897535549603,4.99130067673937,7.13715955188647,2.99634588564476,1.17141414992713,0.902838299183157,4.5481500811197,0,0.664225598535437,1.29058417979192,2.17209036170207,4.11182430671755,7.54915532383883,1.03384013061444,1.07857100409308,0.320182673410333,0,1.66435439510497,0.604780586659361,2.97729369382532,3.99001130548962,12.9103643439214,3.07533958213682,2.04682899626681,5.46903331888265,4.45254199334973,2.31314540703983,1.59805552781814,0.492762936082855,2.07701771673448,1.27831416305955,0.483437798366489,2.00506470303285,0.276242966807689,1.95184561879831,2.00300284807389,4.327105693661,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,0,0,0,0,0.261435451024901,0,0.328014645699706,0,0.824328093181778,0.183138929636687,0.082509499920588,0,0.650060246036521,1.6068392984416,1.45006077438183,0.616194468458578,1.22802939780904,0.551346289938122,0.859361958946189,2.61030049045611,0.170453254832202,1.33548053470106,0.165284915360978,0,0,0.10115778085555,0.929691098594572,13.2221185668869,0,0.924100740528266,0,1.73986598415015,0,0,0.744316738719335,0.632758849437452,1.33441135746677,1.79128453917934,1.71175595213568,0.95460974377781,0,0.719489830333259,1.37268514868027,0.471249609382746,0,3.17020642346017,0,0,1.21856744815642,1.0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| ||
|short_description=p@chr12:57556203..57556225,+ | |||
}} | }} |
Latest revision as of 10:34, 24 July 2015
Short description: | p@chr12:57556203..57556225, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:57556203..57556225, + |
Coexpression cluster: | C1365_Fibroblast_Adipocyte_Preadipocyte_Smooth_Chondrocyte_Mesenchymal_Pericytes |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.87e-16 | 76 |
connective tissue cell | 1.37e-14 | 361 |
multi fate stem cell | 1.96e-14 | 427 |
somatic stem cell | 1.26e-13 | 433 |
stem cell | 1.35e-12 | 441 |
mesenchymal cell | 9.21e-12 | 354 |
motile cell | 7.34e-09 | 386 |
skin fibroblast | 1.49e-08 | 23 |
preadipocyte | 1.66e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.29e-14 | 371 |
integument | 2.03e-08 | 46 |
integumental system | 2.03e-08 | 46 |
mesoderm | 2.32e-07 | 315 |
mesoderm-derived structure | 2.32e-07 | 315 |
presumptive mesoderm | 2.32e-07 | 315 |
musculoskeletal system | 3.41e-07 | 167 |
adipose tissue | 5.51e-07 | 14 |
omentum | 5.94e-07 | 6 |
peritoneum | 5.94e-07 | 6 |
abdominal cavity | 5.94e-07 | 6 |
visceral peritoneum | 5.94e-07 | 6 |