FFCP PHASE1:Hg19::chr12:53574376..53574395,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:53574376..53574395,- to FFCP PHASE1:Hg19::chr12:53574376..53574395,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51380 | |EntrezGene=51380 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18966 | |HGNC=18966 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y600,C9JTU8,Q9Y602 | |UniProt=Q9Y600,C9JTU8,Q9Y602 | ||
|association_with_transcript=0bp_to_ENST00000267085,ENST00000379846,ENST00000379850,ENST00000424990,ENST00000544139_5end | |||
|cluster_id=chr12:53574376..53574395,- | |||
|description=CAGE_peak_4_at_CSAD_5end | |||
|id=chr12:53574376..53574395,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.40e-15!57;UBERON:0005068!2.40e-15!57;UBERON:0006241!2.40e-15!57;UBERON:0007135!2.40e-15!57;UBERON:0000073!6.37e-13!94;UBERON:0001016!6.37e-13!94;UBERON:0001017!1.49e-12!82;UBERON:0002616!2.71e-12!59;UBERON:0007023!3.07e-12!115;UBERON:0005743!4.08e-12!86;UBERON:0000955!8.02e-12!69;UBERON:0006238!8.02e-12!69;UBERON:0002346!1.10e-10!90;UBERON:0003080!1.89e-10!42;UBERON:0002780!3.99e-10!41;UBERON:0001890!3.99e-10!41;UBERON:0006240!3.99e-10!41;UBERON:0003075!2.46e-09!86;UBERON:0007284!2.46e-09!86;UBERON:0000153!1.26e-08!129;UBERON:0007811!1.26e-08!129;UBERON:0000033!5.46e-08!123;UBERON:0001893!7.74e-08!34;UBERON:0002020!1.20e-07!34;UBERON:0003528!1.20e-07!34;UBERON:0002791!1.66e-07!33;UBERON:0001869!1.97e-07!32;UBERON:0000924!4.19e-07!173;UBERON:0006601!4.19e-07!173;UBERON:0003056!8.91e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;5.32e-09;53!UBERON:0002616;5.32e-09;53!UBERON:0002780;1.82e-07;41!UBERON:0001890;1.82e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.26e-16,56;UBERON:0005068,1.26e-16,56;UBERON:0006241,1.26e-16,56;UBERON:0007135,1.26e-16,56;UBERON:0000073,2.97e-15,53;UBERON:0002616,2.97e-15,53;UBERON:0001016,3.01e-14,89;UBERON:0001017,8.80e-14,81;UBERON:0002346,3.57e-13,86;UBERON:0007023,1.03e-12,114;UBERON:0000955,3.02e-12,68;UBERON:0006238,3.02e-12,68;UBERON:0003075,1.58e-11,82;UBERON:0007284,1.58e-11,82;UBERON:0002780,5.60e-11,41;UBERON:0001890,5.60e-11,41;UBERON:0003080,5.60e-11,41;UBERON:0006240,5.60e-11,41;UBERON:0004121,4.49e-09,171;UBERON:0000924,4.49e-09,171;UBERON:0006601,4.49e-09,171;UBERON:0010371,5.70e-09,104;UBERON:0001893,1.00e-08,34;UBERON:0003528,1.66e-08,34;UBERON:0002020,1.66e-08,34;UBERON:0011216,1.90e-08,223;UBERON:0001869,2.98e-08,32;UBERON:0002791,8.05e-08,32;UBERON:0003056,2.73e-07,61;UBERON:0003076,3.52e-07,15;UBERON:0003057,3.52e-07,15;UBERON:0002619,5.98e-07,22;UBERON:0000956,7.32e-07,25;UBERON:0000203,7.32e-07,25 | |||
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| ||
|short_description=p4@CSAD | |||
}} | }} |
Latest revision as of 01:54, 19 September 2015
Short description: | p4@CSAD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CSAD_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000267085, ENST00000379846, ENST00000379850, ENST00000424990, ENST00000544139_5end |
EntrezGene: | CSAD |
HGNC: | 18966 |
UniProt: | Q9Y600C9JTU8Q9Y602 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.26e-16 | 56 |
neural rod | 1.26e-16 | 56 |
future spinal cord | 1.26e-16 | 56 |
neural keel | 1.26e-16 | 56 |
regional part of nervous system | 2.97e-15 | 53 |
regional part of brain | 2.97e-15 | 53 |
nervous system | 3.01e-14 | 89 |
central nervous system | 8.80e-14 | 81 |
neurectoderm | 3.57e-13 | 86 |
adult organism | 1.03e-12 | 114 |
brain | 3.02e-12 | 68 |
future brain | 3.02e-12 | 68 |
neural plate | 1.58e-11 | 82 |
presumptive neural plate | 1.58e-11 | 82 |
regional part of forebrain | 5.60e-11 | 41 |
forebrain | 5.60e-11 | 41 |
anterior neural tube | 5.60e-11 | 41 |
future forebrain | 5.60e-11 | 41 |
ectoderm-derived structure | 4.49e-09 | 171 |
ectoderm | 4.49e-09 | 171 |
presumptive ectoderm | 4.49e-09 | 171 |
ecto-epithelium | 5.70e-09 | 104 |
telencephalon | 1.00e-08 | 34 |
brain grey matter | 1.66e-08 | 34 |
gray matter | 1.66e-08 | 34 |
organ system subdivision | 1.90e-08 | 223 |
cerebral hemisphere | 2.98e-08 | 32 |
regional part of telencephalon | 8.05e-08 | 32 |
pre-chordal neural plate | 2.73e-07 | 61 |
posterior neural tube | 3.52e-07 | 15 |
chordal neural plate | 3.52e-07 | 15 |
regional part of cerebral cortex | 5.98e-07 | 22 |
cerebral cortex | 7.32e-07 | 25 |
pallium | 7.32e-07 | 25 |