FFCP PHASE1:Hg19::chr11:844067..844158,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:844067..844158,+ to FFCP PHASE1:Hg19::chr11:844067..844158,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7106 | |EntrezGene=7106 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11859 | |HGNC=11859 | ||
|TSSclassifier=strong | |||
|UniProt=O14817,A8MVV6 | |UniProt=O14817,A8MVV6 | ||
|association_with_transcript=0bp_to_ENST00000397406,ENST00000409543,ENST00000525201,NM_001025234,uc001lsi.1_5end | |||
|cluster_id=chr11:844067..844158,+ | |||
|coexpression_cluster_id=C1631 | |||
|description=CAGE_peak_2_at_TSPAN4_5end | |||
|id=chr11:844067..844158,+ | |||
|ontology_enrichment_celltype=CL:0002371!6.35e-17!591;CL:0000055!7.60e-17!180;CL:0000222!4.41e-16!119;CL:0000557!1.38e-14!71;CL:0000839!2.50e-14!70;CL:0000144!2.62e-14!625;CL:0000048!4.33e-14!430;CL:0002194!1.94e-13!63;CL:0000576!1.94e-13!63;CL:0000040!1.94e-13!63;CL:0000559!1.94e-13!63;CL:0000723!3.59e-13!436;CL:0002009!1.23e-12!65;CL:0000766!1.80e-12!76;CL:0000034!1.36e-11!444;CL:0000359!2.37e-11!32;CL:0000192!7.71e-11!42;CL:0000514!7.71e-11!42;CL:0000548!1.06e-10!679;CL:0000004!1.06e-10!679;CL:0000255!1.06e-10!679;CL:0000057!1.39e-10!75;CL:0000012!1.84e-10!682;CL:0002057!1.72e-09!42;CL:0000860!3.94e-09!45;CL:0000680!4.42e-09!57;CL:0000056!4.42e-09!57;CL:0000355!4.42e-09!57;CL:0000187!3.08e-08!54;CL:0000183!3.32e-08!59;CL:0002320!1.57e-07!365;CL:0000213!1.58e-07!57;CL:0000215!1.58e-07!57;CL:0000134!2.05e-07!358;CL:0000220!2.87e-07!246;CL:0000063!4.93e-07!578;CL:0002321!8.82e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.55e-11;32!CL:0000473;4.22e-10;39!CL:0000234;4.22e-10;39!CL:0000860;1.82e-08;33!CL:0002057;1.82e-08;33!CL:0000192;3.93e-08;43!CL:0000576;8.89e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.12e-16,121;CL:0000557,7.61e-15,67;CL:0000839,1.55e-14,66;CL:0000048,2.08e-14,427;CL:0002194,1.04e-13,59;CL:0000576,1.04e-13,59;CL:0000040,1.04e-13,59;CL:0000559,1.04e-13,59;CL:0000723,1.53e-13,433;CL:0000473,6.98e-13,48;CL:0000234,6.98e-13,48;CL:0002009,7.44e-13,61;CL:0000766,1.63e-12,72;CL:0000034,7.01e-12,441;CL:0000359,1.98e-11,32;CL:0000057,3.96e-11,76;CL:0000192,8.21e-11,43;CL:0000514,8.21e-11,43;CL:0000860,1.49e-09,42;CL:0002057,1.49e-09,42;CL:0000680,4.22e-09,58;CL:0000056,4.22e-09,58;CL:0000355,4.22e-09,58;CL:0000187,2.95e-08,55;CL:0002320,9.14e-08,361;CL:0000134,1.20e-07,354;CL:0000213,1.28e-07,58;CL:0000215,1.28e-07,58;CL:0002078,8.98e-07,45;CL:0000115,9.13e-07,36 | |||
|ontology_enrichment_development_v019=CL:0000514;3.93e-08;43!CL:0002057;2.20e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!7.14e-25!216;UBERON:0002204!4.82e-24!167;UBERON:0000926!1.29e-23!448;UBERON:0004120!1.29e-23!448;UBERON:0006603!1.29e-23!448;UBERON:0004872!1.80e-16!84;UBERON:0000055!3.40e-16!69;UBERON:0001637!2.59e-15!42;UBERON:0003509!2.59e-15!42;UBERON:0004572!2.59e-15!42;UBERON:0002371!1.47e-14!80;UBERON:0001981!1.53e-14!60;UBERON:0007500!1.53e-14!60;UBERON:0004537!1.53e-14!60;UBERON:0006965!1.53e-14!60;UBERON:0004765!4.65e-14!101;UBERON:0001434!4.65e-14!101;UBERON:0001474!6.52e-14!86;UBERON:0002405!1.88e-13!115;UBERON:0000467!2.31e-13!625;UBERON:0002049!3.94e-13!79;UBERON:0007798!3.94e-13!79;UBERON:0000480!4.95e-13!626;UBERON:0004573!1.22e-12!33;UBERON:0004571!1.22e-12!33;UBERON:0003914!3.22e-12!118;UBERON:0000468!4.59e-12!659;UBERON:0002193!1.15e-10!112;UBERON:0004535!4.04e-10!110;UBERON:0000914!4.47e-10!83;UBERON:0002329!4.47e-10!83;UBERON:0003077!4.47e-10!83;UBERON:0003059!4.47e-10!83;UBERON:0007282!4.47e-10!83;UBERON:0009618!4.47e-10!83;UBERON:0007285!4.47e-10!83;UBERON:0001009!4.66e-10!113;UBERON:0004290!8.27e-10!70;UBERON:0001134!8.38e-09!61;UBERON:0002036!8.38e-09!61;UBERON:0003082!8.38e-09!61;UBERON:0000486!9.68e-09!82;UBERON:0002390!1.38e-08!102;UBERON:0003061!1.38e-08!102;UBERON:0002385!1.43e-08!63;UBERON:0001015!1.43e-08!63;UBERON:0000383!1.43e-08!63;UBERON:0005256!2.57e-08!143;UBERON:0002384!1.98e-07!375;UBERON:0002100!7.18e-07!216;UBERON:0000947!8.51e-07!21;UBERON:0010191!8.51e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.00e-11;33!UBERON:0004571;1.00e-11;33!UBERON:0001637;1.99e-11;42!UBERON:0003509;1.99e-11;42!UBERON:0004572;1.99e-11;42!UBERON:0000055;9.73e-09;65!UBERON:0007500;5.05e-08;56!UBERON:0001981;5.05e-08;56!UBERON:0004537;5.05e-08;56!UBERON:0000947;7.81e-07;21!UBERON:0010191;7.81e-07;21 | |||
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| ||
|short_description=p2@TSPAN4 | |||
}} | }} |
Latest revision as of 20:07, 24 September 2015
Short description: | p2@TSPAN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TSPAN4_5end |
Coexpression cluster: | C1631_Monocytederived_Melanocyte_CD14_Macrophage_Mast_Mesenchymal_Fibroblast |
Association with transcript: | 0bp_to_ENST00000397406, ENST00000409543, ENST00000525201, NM_001025234, uc001lsi.1_5end |
EntrezGene: | TSPAN4 |
HGNC: | 11859 |
UniProt: | O14817A8MVV6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.12e-16 | 121 |
granulocyte monocyte progenitor cell | 7.61e-15 | 67 |
myeloid lineage restricted progenitor cell | 1.55e-14 | 66 |
multi fate stem cell | 2.08e-14 | 427 |
monopoietic cell | 1.04e-13 | 59 |
monocyte | 1.04e-13 | 59 |
monoblast | 1.04e-13 | 59 |
promonocyte | 1.04e-13 | 59 |
somatic stem cell | 1.53e-13 | 433 |
defensive cell | 6.98e-13 | 48 |
phagocyte | 6.98e-13 | 48 |
macrophage dendritic cell progenitor | 7.44e-13 | 61 |
myeloid leukocyte | 1.63e-12 | 72 |
stem cell | 7.01e-12 | 441 |
vascular associated smooth muscle cell | 1.98e-11 | 32 |
fibroblast | 3.96e-11 | 76 |
smooth muscle cell | 8.21e-11 | 43 |
smooth muscle myoblast | 8.21e-11 | 43 |
classical monocyte | 1.49e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.49e-09 | 42 |
muscle precursor cell | 4.22e-09 | 58 |
myoblast | 4.22e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.22e-09 | 58 |
muscle cell | 2.95e-08 | 55 |
connective tissue cell | 9.14e-08 | 361 |
mesenchymal cell | 1.20e-07 | 354 |
lining cell | 1.28e-07 | 58 |
barrier cell | 1.28e-07 | 58 |
meso-epithelial cell | 8.98e-07 | 45 |
endothelial cell | 9.13e-07 | 36 |