FFCP PHASE1:Hg19::chr11:77184739..77184786,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:77184739..77184786,- to FFCP PHASE1:Hg19::chr11:77184739..77184786,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5058 | |EntrezGene=5058 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8590 | |HGNC=8590 | ||
|TSSclassifier=strong | |||
|UniProt=E9PQW5 | |UniProt=E9PQW5 | ||
|association_with_transcript=0bp_to_ENST00000524847_5end | |||
|cluster_id=chr11:77184739..77184786,- | |||
|description=CAGE_peak_3_at_PAK1_5end | |||
|id=chr11:77184739..77184786,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.74e-18!94;UBERON:0001016!1.74e-18!94;UBERON:0005743!2.27e-18!86;UBERON:0001017!1.99e-17!82;UBERON:0000924!2.89e-14!173;UBERON:0006601!2.89e-14!173;UBERON:0007023!3.28e-14!115;UBERON:0000955!1.39e-13!69;UBERON:0006238!1.39e-13!69;UBERON:0002346!1.92e-13!90;UBERON:0004121!2.11e-13!169;UBERON:0001049!3.57e-13!57;UBERON:0005068!3.57e-13!57;UBERON:0006241!3.57e-13!57;UBERON:0007135!3.57e-13!57;UBERON:0001893!5.84e-13!34;UBERON:0001869!1.07e-12!32;UBERON:0003075!1.60e-12!86;UBERON:0007284!1.60e-12!86;UBERON:0002791!2.00e-12!33;UBERON:0002780!2.52e-12!41;UBERON:0001890!2.52e-12!41;UBERON:0006240!2.52e-12!41;UBERON:0002020!4.79e-12!34;UBERON:0003528!4.79e-12!34;UBERON:0003056!6.19e-12!61;UBERON:0000033!6.39e-12!123;UBERON:0000153!6.96e-12!129;UBERON:0007811!6.96e-12!129;UBERON:0003080!1.78e-11!42;UBERON:0000956!3.78e-11!25;UBERON:0000203!3.78e-11!25;UBERON:0002616!4.02e-11!59;UBERON:0002619!9.19e-11!22;UBERON:0001950!1.08e-10!20;UBERON:0000062!1.62e-10!511;UBERON:0000922!1.63e-10!612;UBERON:0002050!2.38e-08!605;UBERON:0005423!2.38e-08!605;UBERON:0000923!3.30e-08!604;UBERON:0005291!3.30e-08!604;UBERON:0006598!3.30e-08!604;UBERON:0002532!3.30e-08!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.72e-12;32!UBERON:0001893;5.55e-12;34!UBERON:0000956;1.19e-11;25!UBERON:0000203;1.19e-11;25!UBERON:0002791;1.23e-11;32!UBERON:0002619;2.06e-11;22!UBERON:0001950;2.74e-11;20!UBERON:0003528;3.13e-11;34!UBERON:0002020;3.13e-11;34!UBERON:0002780;2.33e-09;41!UBERON:0001890;2.33e-09;41!UBERON:0000073;1.06e-08;53!UBERON:0002616;1.06e-08;53!UBERON:0000922;1.33e-07;49!UBERON:0001016;1.56e-07;83!UBERON:0000955;3.01e-07;68!UBERON:0001017;4.25e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.74e-19,89;UBERON:0001017,3.95e-19,81;UBERON:0011216,1.50e-16,223;UBERON:0004121,2.59e-15,171;UBERON:0000924,2.59e-15,171;UBERON:0006601,2.59e-15,171;UBERON:0000955,5.94e-15,68;UBERON:0006238,5.94e-15,68;UBERON:0001049,9.03e-15,56;UBERON:0005068,9.03e-15,56;UBERON:0006241,9.03e-15,56;UBERON:0007135,9.03e-15,56;UBERON:0000073,9.06e-15,53;UBERON:0002616,9.06e-15,53;UBERON:0002346,1.96e-14,86;UBERON:0003056,6.77e-14,61;UBERON:0001893,7.49e-14,34;UBERON:0007023,1.28e-13,114;UBERON:0001869,1.44e-13,32;UBERON:0003075,1.95e-13,82;UBERON:0007284,1.95e-13,82;UBERON:0002780,5.18e-13,41;UBERON:0001890,5.18e-13,41;UBERON:0003080,5.18e-13,41;UBERON:0006240,5.18e-13,41;UBERON:0002791,5.49e-13,32;UBERON:0003528,7.23e-13,34;UBERON:0002020,7.23e-13,34;UBERON:0010371,2.07e-12,104;UBERON:0000956,6.70e-12,25;UBERON:0000203,6.70e-12,25;UBERON:0002619,1.75e-11,22;UBERON:0001950,2.09e-11,20;UBERON:0000922,3.03e-10,592;UBERON:0005423,9.63e-08,581 | |||
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| ||
|short_description=p3@PAK1 | |||
}} | }} |
Latest revision as of 13:57, 24 September 2015
Short description: | p3@PAK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PAK1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000524847_5end |
EntrezGene: | PAK1 |
HGNC: | 8590 |
UniProt: | E9PQW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 2.74e-19 | 89 |
central nervous system | 3.95e-19 | 81 |
organ system subdivision | 1.50e-16 | 223 |
ectoderm-derived structure | 2.59e-15 | 171 |
ectoderm | 2.59e-15 | 171 |
presumptive ectoderm | 2.59e-15 | 171 |
brain | 5.94e-15 | 68 |
future brain | 5.94e-15 | 68 |
neural tube | 9.03e-15 | 56 |
neural rod | 9.03e-15 | 56 |
future spinal cord | 9.03e-15 | 56 |
neural keel | 9.03e-15 | 56 |
regional part of nervous system | 9.06e-15 | 53 |
regional part of brain | 9.06e-15 | 53 |
neurectoderm | 1.96e-14 | 86 |
pre-chordal neural plate | 6.77e-14 | 61 |
telencephalon | 7.49e-14 | 34 |
adult organism | 1.28e-13 | 114 |
cerebral hemisphere | 1.44e-13 | 32 |
neural plate | 1.95e-13 | 82 |
presumptive neural plate | 1.95e-13 | 82 |
regional part of forebrain | 5.18e-13 | 41 |
forebrain | 5.18e-13 | 41 |
anterior neural tube | 5.18e-13 | 41 |
future forebrain | 5.18e-13 | 41 |
regional part of telencephalon | 5.49e-13 | 32 |
brain grey matter | 7.23e-13 | 34 |
gray matter | 7.23e-13 | 34 |
ecto-epithelium | 2.07e-12 | 104 |
cerebral cortex | 6.70e-12 | 25 |
pallium | 6.70e-12 | 25 |
regional part of cerebral cortex | 1.75e-11 | 22 |
neocortex | 2.09e-11 | 20 |
embryo | 3.03e-10 | 592 |
developing anatomical structure | 9.63e-08 | 581 |