FFCP PHASE1:Hg19::chr11:65325809..65325843,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:65325809..65325843,- to FFCP PHASE1:Hg19::chr11:65325809..65325843,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4054 | |EntrezGene=4054 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6716 | |HGNC=6716 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NS15,Q8WYU6,B9EG76 | |UniProt=Q9NS15,Q8WYU6,B9EG76 | ||
|association_with_transcript=-110bp_to_ENST00000301873,NM_001130144,NM_001164266,NM_021070,uc001oei.2,uc001oej.2,uc010roi.1,uc010roj.1_5end | |||
|cluster_id=chr11:65325809..65325843,- | |||
|description=CAGE_peak_2_at_LTBP3_5end | |||
|id=chr11:65325809..65325843,- | |||
|ontology_enrichment_celltype=CL:0000055!1.42e-07!180;CL:0000222!2.58e-07!119 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.66e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!3.79e-20!194;UBERON:0004111!8.59e-18!241;UBERON:0000119!6.78e-17!312;UBERON:0000477!1.08e-16!286;UBERON:0000483!1.53e-16!309;UBERON:0000475!2.94e-16!365;UBERON:0000481!6.74e-16!347;UBERON:0003914!3.70e-15!118;UBERON:0001009!2.79e-11!113;UBERON:0004535!4.07e-11!110;UBERON:0002346!3.84e-10!90;UBERON:0002100!4.23e-10!216;UBERON:0002049!2.25e-09!79;UBERON:0007798!2.25e-09!79;UBERON:0000490!4.39e-09!138;UBERON:0003075!4.41e-09!86;UBERON:0007284!4.41e-09!86;UBERON:0004872!1.08e-08!84;UBERON:0007625!1.72e-08!11;UBERON:0000073!2.36e-08!94;UBERON:0001016!2.36e-08!94;UBERON:0003103!7.66e-08!69;UBERON:0000468!1.37e-07!659;UBERON:0000055!1.62e-07!69;UBERON:0005743!1.87e-07!86;UBERON:0001981!2.83e-07!60;UBERON:0007500!2.83e-07!60;UBERON:0004537!2.83e-07!60;UBERON:0006965!2.83e-07!60;UBERON:0007023!7.25e-07!115;UBERON:0002417!7.54e-07!61;UBERON:0000916!7.54e-07!61;UBERON:0009569!8.05e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.63e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000025,8.89e-20,192;UBERON:0004111,2.96e-17,240;UBERON:0000119,3.30e-17,309;UBERON:0000483,7.52e-17,306;UBERON:0003914,4.05e-15,117;UBERON:0002100,3.24e-11,199;UBERON:0001009,5.13e-11,112;UBERON:0004535,7.49e-11,109;UBERON:0002346,1.01e-10,86;UBERON:0003104,2.66e-10,160;UBERON:0009142,2.66e-10,160;UBERON:0010314,8.32e-10,132;UBERON:0003075,1.27e-09,82;UBERON:0007284,1.27e-09,82;UBERON:0002049,3.56e-09,78;UBERON:0007798,3.56e-09,78;UBERON:0004872,1.50e-08,83;UBERON:0007625,1.62e-08,11;UBERON:0000490,3.68e-08,148;UBERON:0003103,8.71e-08,68;UBERON:0000055,2.94e-07,68;UBERON:0007500,4.48e-07,59;UBERON:0001981,4.48e-07,59;UBERON:0004537,4.48e-07,59;UBERON:0006965,4.48e-07,59;UBERON:0009569,5.96e-07,112;UBERON:0002417,7.71e-07,60;UBERON:0000916,7.71e-07,60;UBERON:0001016,7.94e-07,89;UBERON:0005256,8.86e-07,122;UBERON:0007023,9.79e-07,114 | |||
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| ||
|short_description=p2@LTBP3 | |||
}} | }} |
Latest revision as of 09:51, 19 September 2015
Short description: | p2@LTBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LTBP3_5end |
Coexpression cluster: | NA |
Association with transcript: | -110bp_to_ENST00000301873, NM_001130144, NM_001164266, NM_021070, uc001oei.2, uc001oej.2, uc010roi.1, uc010roj.1_5end |
EntrezGene: | LTBP3 |
HGNC: | 6716 |
UniProt: | Q9NS15Q8WYU6B9EG76 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.66e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
tube | 8.89e-20 | 192 |
anatomical conduit | 2.96e-17 | 240 |
cell layer | 3.30e-17 | 309 |
epithelium | 7.52e-17 | 306 |
epithelial tube | 4.05e-15 | 117 |
trunk | 3.24e-11 | 199 |
circulatory system | 5.13e-11 | 112 |
cardiovascular system | 7.49e-11 | 109 |
neurectoderm | 1.01e-10 | 86 |
mesenchyme | 2.66e-10 | 160 |
entire embryonic mesenchyme | 2.66e-10 | 160 |
structure with developmental contribution from neural crest | 8.32e-10 | 132 |
neural plate | 1.27e-09 | 82 |
presumptive neural plate | 1.27e-09 | 82 |
vasculature | 3.56e-09 | 78 |
vascular system | 3.56e-09 | 78 |
splanchnic layer of lateral plate mesoderm | 1.50e-08 | 83 |
pigment epithelium of eye | 1.62e-08 | 11 |
unilaminar epithelium | 3.68e-08 | 148 |
compound organ | 8.71e-08 | 68 |
vessel | 2.94e-07 | 68 |
epithelial tube open at both ends | 4.48e-07 | 59 |
blood vessel | 4.48e-07 | 59 |
blood vasculature | 4.48e-07 | 59 |
vascular cord | 4.48e-07 | 59 |
subdivision of trunk | 5.96e-07 | 112 |
abdominal segment of trunk | 7.71e-07 | 60 |
abdomen | 7.71e-07 | 60 |
nervous system | 7.94e-07 | 89 |
trunk mesenchyme | 8.86e-07 | 122 |
adult organism | 9.79e-07 | 114 |