FFCP PHASE1:Hg19::chr11:58345505..58345516,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:58345505..58345516,- to FFCP PHASE1:Hg19::chr11:58345505..58345516,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9404 | |EntrezGene=9404 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14061 | |HGNC=14061 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=176bp_to_ENST00000528489,uc010rkk.1_5end | |||
|cluster_id=chr11:58345505..58345516,- | |||
|coexpression_cluster_id=C123 | |||
|description=CAGE_peak_9_at_LPXN_5end | |||
|id=chr11:58345505..58345516,- | |||
|ontology_enrichment_celltype=CL:0000738!1.30e-24!140;CL:0002031!2.25e-20!124;CL:0002087!3.26e-18!119;CL:0000037!6.78e-18!172;CL:0000566!6.78e-18!172;CL:0000988!1.18e-17!182;CL:0002032!6.24e-17!165;CL:0000837!6.24e-17!165;CL:0000838!1.56e-14!52;CL:0000542!4.61e-14!53;CL:0000051!4.61e-14!53;CL:0000624!7.61e-09!6;CL:0000766!2.11e-08!76;CL:0000791!2.51e-08!18;CL:0000789!2.51e-08!18;CL:0002420!2.51e-08!18;CL:0002419!2.51e-08!18;CL:0000790!2.51e-08!18;CL:0000084!8.35e-08!25;CL:0000827!8.35e-08!25;CL:0000860!9.02e-08!45;CL:0002057!2.92e-07!42;CL:0000134!3.81e-07!358;CL:0000219!4.87e-07!390;CL:0000080!7.60e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000624;1.01e-29;6!CL:0000791;2.87e-21;18!CL:0000789;2.87e-21;18!CL:0002419;2.87e-21;18!CL:0000623;4.01e-16;3!CL:0000542;5.10e-16;53!CL:0000226;2.74e-15;3!CL:0000842;2.74e-15;3!CL:0000898;3.86e-15;3!CL:0000084;7.24e-15;25!CL:0000236;2.27e-13;13!CL:0000771;3.88e-11;2!CL:0000815;1.72e-10;2!CL:0000792;1.72e-10;2!CL:0002677;1.72e-10;2!CL:0002087;2.72e-08;104!CL:0000945;5.84e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,8.74e-30,6;CL:0000838,1.65e-27,52;CL:0000542,6.53e-27,53;CL:0000051,6.53e-27,53;CL:0000738,2.63e-26,136;CL:0000791,2.91e-21,18;CL:0000789,2.91e-21,18;CL:0002420,2.91e-21,18;CL:0002419,2.91e-21,18;CL:0000790,2.91e-21,18;CL:0002087,2.95e-21,115;CL:0002031,3.34e-20,120;CL:0000037,4.36e-20,168;CL:0000988,9.69e-19,177;CL:0002032,1.55e-16,161;CL:0000837,1.55e-16,161;CL:0000623,3.82e-16,3;CL:0000825,3.82e-16,3;CL:0000898,3.11e-15,3;CL:0000226,5.87e-15,3;CL:0000842,5.87e-15,3;CL:0000084,7.33e-15,25;CL:0000827,7.33e-15,25;CL:0000236,1.40e-12,14;CL:0000771,3.34e-11,2;CL:0000815,1.42e-10,2;CL:0000792,1.42e-10,2;CL:0002677,1.42e-10,2;CL:0000945,4.49e-07,24;CL:0000826,4.49e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000790;2.87e-21;18!CL:0000051;5.10e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.38e-08!102;UBERON:0003061!6.38e-08!102;UBERON:0002193!8.59e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p9@LPXN | |||
}} | }} |
Latest revision as of 11:14, 18 September 2015
Short description: | p9@LPXN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LPXN_5end |
Coexpression cluster: | C123_CD19_Natural_CD8_CD4_CD14_Peripheral_Basophils |
Association with transcript: | 176bp_to_ENST00000528489, uc010rkk.1_5end |
EntrezGene: | LPXN |
HGNC: | 14061 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 8.74e-30 | 6 |
lymphoid lineage restricted progenitor cell | 1.65e-27 | 52 |
lymphocyte | 6.53e-27 | 53 |
common lymphoid progenitor | 6.53e-27 | 53 |
leukocyte | 2.63e-26 | 136 |
mature alpha-beta T cell | 2.91e-21 | 18 |
alpha-beta T cell | 2.91e-21 | 18 |
immature T cell | 2.91e-21 | 18 |
mature T cell | 2.91e-21 | 18 |
immature alpha-beta T cell | 2.91e-21 | 18 |
nongranular leukocyte | 2.95e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 3.34e-20 | 120 |
hematopoietic stem cell | 4.36e-20 | 168 |
hematopoietic cell | 9.69e-19 | 177 |
hematopoietic oligopotent progenitor cell | 1.55e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.55e-16 | 161 |
natural killer cell | 3.82e-16 | 3 |
pro-NK cell | 3.82e-16 | 3 |
naive T cell | 3.11e-15 | 3 |
single nucleate cell | 5.87e-15 | 3 |
mononuclear cell | 5.87e-15 | 3 |
T cell | 7.33e-15 | 25 |
pro-T cell | 7.33e-15 | 25 |
B cell | 1.40e-12 | 14 |
eosinophil | 3.34e-11 | 2 |
regulatory T cell | 1.42e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.42e-10 | 2 |
naive regulatory T cell | 1.42e-10 | 2 |
lymphocyte of B lineage | 4.49e-07 | 24 |
pro-B cell | 4.49e-07 | 24 |