FFCP PHASE1:Hg19::chr11:47788928..47788939,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:47788928..47788939,- to FFCP PHASE1:Hg19::chr11:47788928..47788939,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23360 | |EntrezGene=23360 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19752 | |HGNC=19752 | ||
|TSSclassifier=strong | |||
|UniProt=F5GXL1,B3KNP0,Q8N3X1 | |UniProt=F5GXL1,B3KNP0,Q8N3X1 | ||
|association_with_transcript=53bp_to_ENST00000540172,NM_015308,uc001ngl.2,uc009ylv.2_5end | |||
|cluster_id=chr11:47788928..47788939,- | |||
|description=CAGE_peak_4_at_FNBP4_5end | |||
|id=chr11:47788928..47788939,- | |||
|ontology_enrichment_celltype=CL:0000037!5.07e-18!172;CL:0000566!5.07e-18!172;CL:0000988!1.90e-17!182;CL:0000738!3.49e-16!140;CL:0000542!2.26e-15!53;CL:0000051!2.26e-15!53;CL:0000838!2.68e-15!52;CL:0002032!3.64e-15!165;CL:0000837!3.64e-15!165;CL:0002031!9.51e-14!124;CL:0002087!3.42e-13!119;CL:0000084!5.71e-08!25;CL:0000827!5.71e-08!25;CL:0000945!4.24e-07!24;CL:0000826!4.24e-07!24;CL:0000791!8.10e-07!18;CL:0000789!8.10e-07!18;CL:0002420!8.10e-07!18;CL:0002419!8.10e-07!18;CL:0000790!8.10e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.43e-09;53!CL:0000084;1.77e-07;25!CL:0000945;4.80e-07;24!CL:0000624;6.61e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.05e-19,168;CL:0000738,1.43e-18,136;CL:0000988,1.26e-17,177;CL:0000838,4.02e-16,52;CL:0000542,1.47e-15,53;CL:0000051,1.47e-15,53;CL:0002032,1.77e-15,161;CL:0000837,1.77e-15,161;CL:0002031,2.47e-15,120;CL:0002087,5.99e-14,115;CL:0000084,9.90e-08,25;CL:0000827,9.90e-08,25;CL:0000945,1.46e-07,24;CL:0000826,1.46e-07,24;CL:0000624,4.01e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;1.43e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.98e-12!94;UBERON:0001016!1.98e-12!94;UBERON:0001017!3.80e-12!82;UBERON:0001049!1.49e-11!57;UBERON:0005068!1.49e-11!57;UBERON:0006241!1.49e-11!57;UBERON:0007135!1.49e-11!57;UBERON:0005743!1.80e-11!86;UBERON:0000955!4.54e-11!69;UBERON:0006238!4.54e-11!69;UBERON:0001869!6.96e-11!32;UBERON:0002780!8.55e-11!41;UBERON:0001890!8.55e-11!41;UBERON:0006240!8.55e-11!41;UBERON:0002616!2.00e-10!59;UBERON:0001893!2.97e-10!34;UBERON:0003080!5.45e-10!42;UBERON:0002791!5.76e-10!33;UBERON:0002020!1.20e-09!34;UBERON:0003528!1.20e-09!34;UBERON:0002619!1.80e-09!22;UBERON:0000956!1.18e-08!25;UBERON:0000203!1.18e-08!25;UBERON:0001950!1.22e-08!20;UBERON:0007023!7.26e-08!115;UBERON:0002346!1.59e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.97e-10;22!UBERON:0001869;1.01e-09;32!UBERON:0002780;2.43e-09;41!UBERON:0001890;2.43e-09;41!UBERON:0001950;2.92e-09;20!UBERON:0002791;3.66e-09;32!UBERON:0001893;4.21e-09;34!UBERON:0000956;1.71e-08;25!UBERON:0000203;1.71e-08;25!UBERON:0003528;3.63e-08;34!UBERON:0002020;3.63e-08;34!UBERON:0000073;1.51e-07;53!UBERON:0002616;1.51e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.49e-13,53;UBERON:0002616,6.49e-13,53;UBERON:0002780,1.04e-12,41;UBERON:0001890,1.04e-12,41;UBERON:0003080,1.04e-12,41;UBERON:0006240,1.04e-12,41;UBERON:0001049,2.58e-12,56;UBERON:0005068,2.58e-12,56;UBERON:0006241,2.58e-12,56;UBERON:0007135,2.58e-12,56;UBERON:0001016,8.85e-12,89;UBERON:0001869,9.84e-12,32;UBERON:0001017,1.98e-11,81;UBERON:0001893,2.47e-11,34;UBERON:0000955,3.78e-11,68;UBERON:0006238,3.78e-11,68;UBERON:0002619,5.51e-11,22;UBERON:0002791,1.04e-10,32;UBERON:0001950,9.36e-10,20;UBERON:0003528,1.25e-09,34;UBERON:0002020,1.25e-09,34;UBERON:0000956,5.83e-09,25;UBERON:0000203,5.83e-09,25;UBERON:0002346,8.05e-09,86;UBERON:0003075,2.32e-07,82;UBERON:0007284,2.32e-07,82;UBERON:0007023,3.25e-07,114;UBERON:0003056,4.29e-07,61 | |||
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| ||
|short_description=p4@FNBP4 | |||
}} | }} |
Latest revision as of 06:25, 18 September 2015
Short description: | p4@FNBP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_FNBP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 53bp_to_ENST00000540172, NM_015308, uc001ngl.2, uc009ylv.2_5end |
EntrezGene: | FNBP4 |
HGNC: | 19752 |
UniProt: | F5GXL1B3KNP0Q8N3X1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.05e-19 | 168 |
leukocyte | 1.43e-18 | 136 |
hematopoietic cell | 1.26e-17 | 177 |
lymphoid lineage restricted progenitor cell | 4.02e-16 | 52 |
lymphocyte | 1.47e-15 | 53 |
common lymphoid progenitor | 1.47e-15 | 53 |
hematopoietic oligopotent progenitor cell | 1.77e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.77e-15 | 161 |
hematopoietic lineage restricted progenitor cell | 2.47e-15 | 120 |
nongranular leukocyte | 5.99e-14 | 115 |
T cell | 9.90e-08 | 25 |
pro-T cell | 9.90e-08 | 25 |
lymphocyte of B lineage | 1.46e-07 | 24 |
pro-B cell | 1.46e-07 | 24 |
CD4-positive, alpha-beta T cell | 4.01e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.49e-13 | 53 |
regional part of brain | 6.49e-13 | 53 |
regional part of forebrain | 1.04e-12 | 41 |
forebrain | 1.04e-12 | 41 |
anterior neural tube | 1.04e-12 | 41 |
future forebrain | 1.04e-12 | 41 |
neural tube | 2.58e-12 | 56 |
neural rod | 2.58e-12 | 56 |
future spinal cord | 2.58e-12 | 56 |
neural keel | 2.58e-12 | 56 |
nervous system | 8.85e-12 | 89 |
cerebral hemisphere | 9.84e-12 | 32 |
central nervous system | 1.98e-11 | 81 |
telencephalon | 2.47e-11 | 34 |
brain | 3.78e-11 | 68 |
future brain | 3.78e-11 | 68 |
regional part of cerebral cortex | 5.51e-11 | 22 |
regional part of telencephalon | 1.04e-10 | 32 |
neocortex | 9.36e-10 | 20 |
brain grey matter | 1.25e-09 | 34 |
gray matter | 1.25e-09 | 34 |
cerebral cortex | 5.83e-09 | 25 |
pallium | 5.83e-09 | 25 |
neurectoderm | 8.05e-09 | 86 |
neural plate | 2.32e-07 | 82 |
presumptive neural plate | 2.32e-07 | 82 |
adult organism | 3.25e-07 | 114 |
pre-chordal neural plate | 4.29e-07 | 61 |