FFCP PHASE1:Hg19::chr11:47279504..47279563,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:47279504..47279563,+ to FFCP PHASE1:Hg19::chr11:47279504..47279563,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10062 | |EntrezGene=10062 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7966 | |HGNC=7966 | ||
|TSSclassifier=strong | |||
|UniProt=F8WC63,C9JBS2,C9JEC2,Q13133 | |UniProt=F8WC63,C9JBS2,C9JEC2,Q13133 | ||
|association_with_transcript=0bp_to_ENST00000405853,ENST00000420369,ENST00000436029,ENST00000437276,ENST00000441012,ENST00000467728,ENST00000476086,ENST00000525441,uc001nem.2_5end | |||
|cluster_id=chr11:47279504..47279563,+ | |||
|description=CAGE_peak_1_at_NR1H3_5end | |||
|id=chr11:47279504..47279563,+ | |||
|ontology_enrichment_celltype=CL:0000557!3.84e-10!71;CL:0002009!9.92e-10!65;CL:0002194!1.29e-09!63;CL:0000576!1.29e-09!63;CL:0000040!1.29e-09!63;CL:0000559!1.29e-09!63;CL:0000839!1.75e-09!70;CL:0000766!4.51e-08!76 | |||
|ontology_enrichment_celltype_v019=CL:0000136;5.65e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,4.04e-09,67;CL:0002009,1.12e-08,61;CL:0000839,1.42e-08,66;CL:0002194,1.53e-08,59;CL:0000576,1.53e-08,59;CL:0000040,1.53e-08,59;CL:0000559,1.53e-08,59;CL:0000766,7.41e-07,72;CL:0000136,8.09e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.54e-12!115;UBERON:0000926!5.62e-12!448;UBERON:0004120!5.62e-12!448;UBERON:0006603!5.62e-12!448;UBERON:0000468!8.86e-11!659;UBERON:0000922!1.67e-10!612;UBERON:0000062!2.02e-10!511;UBERON:0002050!9.99e-10!605;UBERON:0005423!9.99e-10!605;UBERON:0002371!1.01e-09!80;UBERON:0000467!1.20e-09!625;UBERON:0000923!1.42e-09!604;UBERON:0005291!1.42e-09!604;UBERON:0006598!1.42e-09!604;UBERON:0002532!1.42e-09!604;UBERON:0000480!2.08e-09!626;UBERON:0002204!5.37e-09!167;UBERON:0007023!1.76e-08!115;UBERON:0001474!2.17e-08!86;UBERON:0002193!9.95e-08!112;UBERON:0002390!1.21e-07!102;UBERON:0003061!1.21e-07!102;UBERON:0004765!1.45e-07!101;UBERON:0001434!1.45e-07!101;UBERON:0000160!3.24e-07!27 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,4.47e-10,93;UBERON:0002204,2.84e-09,167;UBERON:0002371,3.99e-09,76;UBERON:0004765,3.99e-08,90;UBERON:0007023,4.77e-08,114;UBERON:0000926,5.16e-08,315;UBERON:0004120,5.16e-08,315;UBERON:0006603,5.16e-08,315;UBERON:0001434,7.63e-08,100;UBERON:0001474,9.80e-08,82;UBERON:0002193,2.11e-07,108;UBERON:0002390,4.39e-07,98;UBERON:0003061,4.39e-07,98;UBERON:0000922,5.21e-07,592;UBERON:0000923,8.16e-07,560;UBERON:0010316,8.16e-07,560;UBERON:0005291,8.16e-07,560;UBERON:0006598,8.16e-07,560;UBERON:0010317,8.16e-07,560;UBERON:0002532,8.16e-07,560 | |||
|phase1_expression=2.54349730978779,174.491926971151,30.1642424765378,15.0109947529696,73.3016194860752,0,298.893856238606,61.2768277224026,273.200167097031,1.96587149201207,1.39560233594486,0.218441372130172,2.37390280405608,6.93091576576261,4.30816588446291,21.5144046864568,2.41077811209591,2.92124036154949,0,4.062994916534,3.87601313364081,2.82109249330279,0.286235987131057,1.36874425072884,0.627713197974014,0,0,0,2.36018566109342,0.767658796194425,0.77408061658038,0,0,0,0,0,7.92721186204087,1.66198622559563,2.20598892217156,0.434021741431704,54.4114602403016,44.3734322446002,55.3787470413501,1.16318591023652,3.77875943688809,2.66842467306598,4.88100977501938,8.22335776043652,2.47765096716083,0.863077176966451,2.30544635876191,2.12834006899727,1.37898272294647,3.22742341791913,9.47985406160392,5.08254316765033,5.73102915121476,4.04502272001152,2.14258724659632,3.53021929783703,3.83602275479425,0.659702600373432,1.19678194572979,0.426224750532694,1.7412554317715,3.97169657283798,6.85104473895132,0.75374599577023,1.0429658368404,2.17188844705117,0.605399502633369,1.84138817993782,3.48108626184973,6.97142444829408,12.7562579979026,13.4181533125361,1.57260083605093,4.05477610672067,2.08943262706204,3.70516566863623,2.78483348078726,3.10529061399878,0,0,0,0,0,0,0,0,0,0,0,13.2171328579026,3.92355994087075,5.26768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822189523018381,0.276350017785848,0.579606171470105,0,0,0,0.339928028092699,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.710331756132051,0,0,0,0,4.87613732627923,29.51083782696,3.32442660793179,0,0.50133791063589,0.289693037921647,0,0.973269740605272,2.3633704291017,1.77383517970051,2.45937399940753,6.35248516163906,0,0.370784442784429,21.4201279812091,19.6766603148172,59.4322083519327,0.238490624305342,0,0,0.39752481473341,4.30117297553062,0,0.56530794192401,0,2.75118041940067,0.208994966536811,0,0,0.33472061276467,4.02829317109147,18.2465305372443,13.1793511076012,0.735326160691737,2.43042584364528,1.96459402224975,1.12264686313085,1.57656072676651,1.53316637465883,0,0.366403487860815,0,0,0,0.496971951695318,1.01304409331664,0.397227542439656,0.860509862246441,3.54668382198357,1.12135520028461,2.1349799145941,1.2333377420858,7.78027588499416,2.42479209725439,4.90385709340376,8.77873080340602,6.33793516927999,8.66989297785048,33.088968144014,15.4027391817001,15.5426627773873,1.05691048779388,1.13311061057692,0.140450806702248,7.34955016517616,3.4393608847295,10.6425554611038,3.56400857184616,4.94533858557114,14.5625817910084,20.8399261126709,4.20840284885166,1.7516592782075,1.6623846929051,2.63386572528503,0.612975591598039,3.30523729594513,1.36118619792025,0.538168907066586,0.85422955527427,0,0.900273288253207,0.92747276314595,1.03056216018252,0.930584281657949,0.168776332241266,0.389748020644795,0.757301322732344,1.47279837827679,5.33431987502079,0.355009592516614,0.503760491138201,0.508681776931463,0,0,0,1.95157929807353,0.927708378250397,1.04574548582567,2.38420426535352,1.7662459561294,1.45990943630332,1.56449532329816,0.643240938192885,0,1.85747171212792,2.88751792667834,3.54920400119532,5.39471008249925,5.06123162755312,3.639701100169,4.35758888184812,4.50814176311084,4.44943316928543,5.101758093259,5.77120735419586,2.21446636387394,2.80483547606892,4.5273141246454,5.88034845542168,24.0834566161479,24.5706804169407,17.1329072937607,0,4.79654910318143,0.514703430895577,0.109750285408626,0,0,0,3.58389135841357,7.27954349695705,1.44331342025273,1.73895607462615,0.469634776943287,1.58803092537181,0,2.28304982681518,0,0,50.2282692418291,473.858636906956,271.549133501507,0,0,0,0.358234090811393,0,0.383382679165211,0.492663237895943,5.63509977684647,5.39053100406007,8.79131715843465,9.4681825069785,2.41291998310242,7.63976851116555,10.5495702489042,35.9252136647681,2.57068731758309,9.61097785100536,3.71574362419752,4.70950554250515,4.79556075716608,1.0267360014933,0.387815147273333,207.440738594092,9.298330278116,2.12750493267896,2.08014873822732,9.25946547343712,2.83698264046557,6.66055447540248,3.57444984145369,9.76718889704597,8.23240336780769,5.21177894869976,1.06617584622764,0.791951872933429,0,0,0.199945982364114,158.110914833548,76.3430778976832,196.075563719219,0.718874566474748,0,0,0.434343920002738,4.9314317412092,0.358121926479791,1.90544744788996,0.985153801009636,0,0.641715181398742,1.77866236955724,0,0.773288812777695,2.84777651068393,0,0.749007023947182,0,0,5.27573414392302,20.5069913634468,5.96783052139418,1.45579603071565,1.42743191037729,1.26161932027148,1.52283839490527,2.40756879782175,9.09630016223939,15.5209606938757,0,1.29058417979192,4.95236602468072,4.89502893656851,4.80400793335198,1.03384013061444,1.50999940573032,1.06727557803444,0,4.99306318531491,0.907170879989041,0.248107807818777,0.767309866440312,1.12264037773229,0.128139149255701,1.02341449813341,0.482561763430822,0,5.08891989548763,3.9063579568888,5.33826514089759,4.67328986265259,3.25389059687886,2.65890789101569,0,0,3.09999010044438,2.73136752010076,2.09799063935079,0,0.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| ||
|short_description=p1@NR1H3 | |||
}} | }} |
Latest revision as of 04:15, 18 September 2015
Short description: | p1@NR1H3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NR1H3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000405853, ENST00000420369, ENST00000436029, ENST00000437276, ENST00000441012, ENST00000467728, ENST00000476086, ENST00000525441, uc001nem.2_5end |
EntrezGene: | NR1H3 |
HGNC: | 7966 |
UniProt: | F8WC63C9JBS2C9JEC2Q13133 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 4.04e-09 | 67 |
macrophage dendritic cell progenitor | 1.12e-08 | 61 |
myeloid lineage restricted progenitor cell | 1.42e-08 | 66 |
monopoietic cell | 1.53e-08 | 59 |
monocyte | 1.53e-08 | 59 |
monoblast | 1.53e-08 | 59 |
promonocyte | 1.53e-08 | 59 |
myeloid leukocyte | 7.41e-07 | 72 |
fat cell | 8.09e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
immune system | 4.47e-10 | 93 |
musculoskeletal system | 2.84e-09 | 167 |
bone marrow | 3.99e-09 | 76 |
skeletal element | 3.99e-08 | 90 |
adult organism | 4.77e-08 | 114 |
mesoderm | 5.16e-08 | 315 |
mesoderm-derived structure | 5.16e-08 | 315 |
presumptive mesoderm | 5.16e-08 | 315 |
skeletal system | 7.63e-08 | 100 |
bone element | 9.80e-08 | 82 |
hemolymphoid system | 2.11e-07 | 108 |
hematopoietic system | 4.39e-07 | 98 |
blood island | 4.39e-07 | 98 |
embryo | 5.21e-07 | 592 |
germ layer | 8.16e-07 | 560 |
germ layer / neural crest | 8.16e-07 | 560 |
embryonic tissue | 8.16e-07 | 560 |
presumptive structure | 8.16e-07 | 560 |
germ layer / neural crest derived structure | 8.16e-07 | 560 |
epiblast (generic) | 8.16e-07 | 560 |