FFCP PHASE1:Hg19::chr11:47270436..47270464,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:47270436..47270464,+ to FFCP PHASE1:Hg19::chr11:47270436..47270464,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10062 | |EntrezGene=10062 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7966 | |HGNC=7966 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IW13 | |UniProt=Q8IW13 | ||
|association_with_transcript=0bp_to_NM_001130102,uc001nej.2,uc001nek.2,uc001nel.2_5end | |||
|cluster_id=chr11:47270436..47270464,+ | |||
|description=CAGE_peak_2_at_NR1H3_5end | |||
|id=chr11:47270436..47270464,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!6.41e-13!347;UBERON:0000064!2.76e-12!219;UBERON:0000475!4.14e-12!365;UBERON:0001049!8.10e-12!57;UBERON:0005068!8.10e-12!57;UBERON:0006241!8.10e-12!57;UBERON:0007135!8.10e-12!57;UBERON:0003075!5.97e-11!86;UBERON:0007284!5.97e-11!86;UBERON:0000153!1.50e-10!129;UBERON:0007811!1.50e-10!129;UBERON:0000033!4.54e-10!123;UBERON:0000955!7.06e-10!69;UBERON:0006238!7.06e-10!69;UBERON:0002616!8.18e-10!59;UBERON:0002346!1.04e-09!90;UBERON:0005743!1.23e-09!86;UBERON:0003056!1.53e-09!61;UBERON:0000119!1.57e-09!312;UBERON:0001017!1.67e-09!82;UBERON:0000483!2.08e-09!309;UBERON:0007023!2.96e-08!115;UBERON:0003080!4.20e-08!42;UBERON:0002780!1.04e-07!41;UBERON:0001890!1.04e-07!41;UBERON:0006240!1.04e-07!41;UBERON:0001008!2.82e-07!45;UBERON:0002020!3.00e-07!34;UBERON:0003528!3.00e-07!34;UBERON:0004119!3.74e-07!169;UBERON:0000925!3.74e-07!169;UBERON:0006595!3.74e-07!169;UBERON:0006554!4.87e-07!44;UBERON:0004121!7.11e-07!169;UBERON:0001893!7.57e-07!34;UBERON:0002791!8.82e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;4.15e-07;30!UBERON:0001008;4.15e-07;30!UBERON:0003528;8.46e-07;34!UBERON:0002020;8.46e-07;34!UBERON:0001893;9.73e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.50e-12,56;UBERON:0005068,3.50e-12,56;UBERON:0006241,3.50e-12,56;UBERON:0007135,3.50e-12,56;UBERON:0000073,1.14e-11,53;UBERON:0002616,1.14e-11,53;UBERON:0003075,1.95e-10,82;UBERON:0007284,1.95e-10,82;UBERON:0001017,7.74e-10,81;UBERON:0000955,1.04e-09,68;UBERON:0006238,1.04e-09,68;UBERON:0011216,1.38e-09,223;UBERON:0002346,3.01e-09,86;UBERON:0010371,4.75e-09,104;UBERON:0003056,1.34e-08,61;UBERON:0002780,2.34e-08,41;UBERON:0001890,2.34e-08,41;UBERON:0003080,2.34e-08,41;UBERON:0006240,2.34e-08,41;UBERON:0001008,3.15e-08,48;UBERON:0003528,3.37e-08,34;UBERON:0002020,3.37e-08,34;UBERON:0006554,5.81e-08,47;UBERON:0007023,6.53e-08,114;UBERON:0000119,9.18e-08,309;UBERON:0001893,9.75e-08,34;UBERON:0000483,1.22e-07,306;UBERON:0002791,2.69e-07,32;UBERON:0001016,3.63e-07,89;UBERON:0010314,4.78e-07,132;UBERON:0001869,6.90e-07,32 | |||
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| ||
|short_description=p2@NR1H3 | |||
}} | }} |
Latest revision as of 04:12, 18 September 2015
Short description: | p2@NR1H3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NR1H3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001130102, uc001nej.2, uc001nek.2, uc001nel.2_5end |
EntrezGene: | NR1H3 |
HGNC: | 7966 |
UniProt: | Q8IW13 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 3.50e-12 | 56 |
neural rod | 3.50e-12 | 56 |
future spinal cord | 3.50e-12 | 56 |
neural keel | 3.50e-12 | 56 |
regional part of nervous system | 1.14e-11 | 53 |
regional part of brain | 1.14e-11 | 53 |
neural plate | 1.95e-10 | 82 |
presumptive neural plate | 1.95e-10 | 82 |
central nervous system | 7.74e-10 | 81 |
brain | 1.04e-09 | 68 |
future brain | 1.04e-09 | 68 |
organ system subdivision | 1.38e-09 | 223 |
neurectoderm | 3.01e-09 | 86 |
ecto-epithelium | 4.75e-09 | 104 |
pre-chordal neural plate | 1.34e-08 | 61 |
regional part of forebrain | 2.34e-08 | 41 |
forebrain | 2.34e-08 | 41 |
anterior neural tube | 2.34e-08 | 41 |
future forebrain | 2.34e-08 | 41 |
renal system | 3.15e-08 | 48 |
brain grey matter | 3.37e-08 | 34 |
gray matter | 3.37e-08 | 34 |
urinary system structure | 5.81e-08 | 47 |
adult organism | 6.53e-08 | 114 |
cell layer | 9.18e-08 | 309 |
telencephalon | 9.75e-08 | 34 |
epithelium | 1.22e-07 | 306 |
regional part of telencephalon | 2.69e-07 | 32 |
nervous system | 3.63e-07 | 89 |
structure with developmental contribution from neural crest | 4.78e-07 | 132 |
cerebral hemisphere | 6.90e-07 | 32 |