FFCP PHASE1:Hg19::chr11:46403248..46403270,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:46403248..46403270,+ to FFCP PHASE1:Hg19::chr11:46403248..46403270,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4192 | |EntrezGene=4192 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6972 | |HGNC=6972 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000481047_5end | |||
|cluster_id=chr11:46403248..46403270,+ | |||
|description=CAGE_peak_2_at_MDK_5end | |||
|id=chr11:46403248..46403270,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.05e-19!248;CL:0000220!6.14e-19!246;CL:0000066!3.97e-18!254;CL:0000222!1.15e-13!119;CL:0000055!1.15e-10!180;CL:0000393!2.86e-09!60;CL:0000211!2.86e-09!60;CL:0000183!5.78e-09!59;CL:0000115!1.00e-07!35;CL:0000187!1.24e-07!54;CL:0002078!1.75e-07!44;CL:0000680!3.27e-07!57;CL:0000056!3.27e-07!57;CL:0000355!3.27e-07!57;CL:0002139!3.89e-07!24;CL:0000213!4.01e-07!57;CL:0000215!4.01e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.79e-07;24!CL:0000115;9.60e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.00e-20,250;CL:0000066,6.81e-18,253;CL:0000222,2.10e-14,121;CL:0000393,9.68e-10,61;CL:0000211,9.68e-10,61;CL:0000115,4.07e-08,36;CL:0000187,4.71e-08,55;CL:0002078,5.54e-08,45;CL:0000213,1.63e-07,58;CL:0000215,1.63e-07,58;CL:0000680,1.91e-07,58;CL:0000056,1.91e-07,58;CL:0000355,1.91e-07,58;CL:0002139,2.86e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.21e-10!143;DOID:3095!4.70e-07!22;DOID:2994!4.70e-07!22;DOID:305!5.23e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.18e-07;22!DOID:2994;3.18e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.42e-10,143;DOID:305,2.30e-07,106;DOID:3095,2.88e-07,22;DOID:2994,2.88e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000119!1.35e-17!312;UBERON:0000483!1.40e-17!309;UBERON:0000490!1.18e-15!138;UBERON:0000481!2.35e-14!347;UBERON:0003914!2.58e-13!118;UBERON:0005256!1.46e-12!143;UBERON:0000468!6.45e-11!659;UBERON:0004111!8.01e-11!241;UBERON:0000477!1.50e-10!286;UBERON:0000475!2.33e-10!365;UBERON:0002049!4.32e-10!79;UBERON:0007798!4.32e-10!79;UBERON:0000922!1.75e-09!612;UBERON:0002100!2.22e-09!216;UBERON:0003104!4.04e-09!238;UBERON:0009142!4.04e-09!238;UBERON:0000025!9.29e-09!194;UBERON:0006554!1.09e-07!44;UBERON:0002050!1.28e-07!605;UBERON:0005423!1.28e-07!605;UBERON:0000055!1.86e-07!69;UBERON:0004872!2.13e-07!84;UBERON:0000923!2.50e-07!604;UBERON:0005291!2.50e-07!604;UBERON:0006598!2.50e-07!604;UBERON:0002532!2.50e-07!604;UBERON:0001008!4.21e-07!45;UBERON:0000467!5.64e-07!625;UBERON:0004119!6.52e-07!169;UBERON:0000925!6.52e-07!169;UBERON:0006595!6.52e-07!169;UBERON:0005911!7.85e-07!82;UBERON:0002385!8.23e-07!63;UBERON:0001015!8.23e-07!63;UBERON:0000383!8.23e-07!63;UBERON:0000480!8.98e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001456;7.07e-07;21!UBERON:0000970;7.28e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.30e-15,309;UBERON:0000483,1.36e-15,306;UBERON:0003104,4.09e-14,160;UBERON:0009142,4.09e-14,160;UBERON:0000490,6.40e-14,148;UBERON:0003914,4.87e-13,117;UBERON:0005256,1.51e-10,122;UBERON:0002049,4.53e-10,78;UBERON:0007798,4.53e-10,78;UBERON:0004111,3.48e-09,240;UBERON:0004119,1.10e-08,160;UBERON:0000925,1.10e-08,160;UBERON:0006595,1.10e-08,160;UBERON:0002100,1.28e-08,199;UBERON:0006554,2.27e-08,47;UBERON:0000922,2.93e-08,592;UBERON:0001008,8.06e-08,48;UBERON:0000055,1.94e-07,68;UBERON:0005423,2.83e-07,581;UBERON:0004872,2.91e-07,83;UBERON:0000025,4.02e-07,192;UBERON:0002385,6.18e-07,64;UBERON:0001015,6.18e-07,64;UBERON:0000383,6.18e-07,64;UBERON:0007503,6.56e-07,78;UBERON:0001134,8.79e-07,62;UBERON:0002036,8.79e-07,62;UBERON:0003082,8.79e-07,62 | |||
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| ||
|short_description=p2@MDK | |||
}} | }} |
Latest revision as of 02:56, 18 September 2015
Short description: | p2@MDK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MDK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000481047_5end |
EntrezGene: | MDK |
HGNC: | 6972 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.00e-20 | 250 |
epithelial cell | 6.81e-18 | 253 |
mesodermal cell | 2.10e-14 | 121 |
electrically responsive cell | 9.68e-10 | 61 |
electrically active cell | 9.68e-10 | 61 |
endothelial cell | 4.07e-08 | 36 |
muscle cell | 4.71e-08 | 55 |
meso-epithelial cell | 5.54e-08 | 45 |
lining cell | 1.63e-07 | 58 |
barrier cell | 1.63e-07 | 58 |
muscle precursor cell | 1.91e-07 | 58 |
myoblast | 1.91e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.91e-07 | 58 |
endothelial cell of vascular tree | 2.86e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.30e-15 | 309 |
epithelium | 1.36e-15 | 306 |
mesenchyme | 4.09e-14 | 160 |
entire embryonic mesenchyme | 4.09e-14 | 160 |
unilaminar epithelium | 6.40e-14 | 148 |
epithelial tube | 4.87e-13 | 117 |
trunk mesenchyme | 1.51e-10 | 122 |
vasculature | 4.53e-10 | 78 |
vascular system | 4.53e-10 | 78 |
anatomical conduit | 3.48e-09 | 240 |
endoderm-derived structure | 1.10e-08 | 160 |
endoderm | 1.10e-08 | 160 |
presumptive endoderm | 1.10e-08 | 160 |
trunk | 1.28e-08 | 199 |
urinary system structure | 2.27e-08 | 47 |
embryo | 2.93e-08 | 592 |
renal system | 8.06e-08 | 48 |
vessel | 1.94e-07 | 68 |
developing anatomical structure | 2.83e-07 | 581 |
splanchnic layer of lateral plate mesoderm | 2.91e-07 | 83 |
tube | 4.02e-07 | 192 |
muscle tissue | 6.18e-07 | 64 |
musculature | 6.18e-07 | 64 |
musculature of body | 6.18e-07 | 64 |
epithelial vesicle | 6.56e-07 | 78 |
skeletal muscle tissue | 8.79e-07 | 62 |
striated muscle tissue | 8.79e-07 | 62 |
myotome | 8.79e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.42e-10 | 143 |
carcinoma | 2.30e-07 | 106 |
germ cell and embryonal cancer | 2.88e-07 | 22 |
germ cell cancer | 2.88e-07 | 22 |