FF:11249-116E7: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005906 | |DRA_sample_Accession=CAGE@SAMD00005906 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005906 | |||
|HumanCAGEScanFiles=NCig10046;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.pairs.bed.gz | |HumanCAGEScanFiles=NCig10046;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008395;DRR009267;DRZ000692;DRZ002077 | |accession_numbers=CAGE;DRX008395;DRR009267;DRZ000692;DRZ002077;DRZ012042;DRZ013427 | ||
|accession_numbers_RNASeq=sRNA-Seq;DRX037017;DRR041383;DRZ007025 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002574 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002574 | ||
Line 53: | Line 55: | ||
|library_id=CNhs10877 | |library_id=CNhs10877 | ||
|library_id_phase_based=2:CNhs10877 | |library_id_phase_based=2:CNhs10877 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11249 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.ACTTGA.11249 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11249 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.ACTTGA.11249 | |||
|name=Pancreatic stromal cells, donor1 | |name=Pancreatic stromal cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 60: | Line 68: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |refex=http://refex.dbcls.jp/genelist.php?lang | ||
|repeat_enrich_byfamily=0,0,0.0180915207549932,0,0,0.0361830415099865,0,0.0905781005116337,0.0695819800362469,-0.241179090683527,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.117139968838441,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0785195963582216,0,0,0,0,0,0,0,0,0.0105759689052891,0,0,0,0.328274990725751,0,0.0333502802981055,0.100594818706322,-0.0608093197326186,0,0,0.00325119149322546,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0.0695819800362469,0,0,0,0,0,-0.0894523328511703,0.0361830415099865,0,0,-0.23631747091527,-0.075411790149977,0,0.20633608837101,0,0.25089613059802,0.031504528129401,-0.138477200800895,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153771813125078,0,0,0,-0.098877677734005,-0.147383818532265,0,0,0,0,0,0 | |repeat_enrich_byfamily=0,0,0.0180915207549932,0,0,0.0361830415099865,0,0.0905781005116337,0.0695819800362469,-0.241179090683527,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.117139968838441,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0785195963582216,0,0,0,0,0,0,0,0,0.0105759689052891,0,0,0,0.328274990725751,0,0.0333502802981055,0.100594818706322,-0.0608093197326186,0,0,0.00325119149322546,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0.0695819800362469,0,0,0,0,0,-0.0894523328511703,0.0361830415099865,0,0,-0.23631747091527,-0.075411790149977,0,0.20633608837101,0,0.25089613059802,0.031504528129401,-0.138477200800895,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153771813125078,0,0,0,-0.098877677734005,-0.147383818532265,0,0,0,0,0,0 | ||
|repeat_enrich_byname=0,0,0,0,0.031504528129401,0,0.25089613059802,0.0695819800362469,0,0.0695819800362469,0.0361830415099865,0.0361830415099865,0,0.20633608837101,0,0,-0.0179915154490036,0,0.0504212334403652,-0.107332101013485,0.0347909900181234,0,0.108724206891226,0,0.100594818706322,0,0,0,0,0.0361830415099865,0,0,0.747882568212307,0,0.131802795221122,0.0528825107731167,0,0.0361830415099865,0,0,0.272051239453461,0,0.093562470416142,-0.0321612195673817,0,0,0,0,0.191342256411925,0,-0.0846964422837541,-0.0465371268134308,0.114395408239542,0.259542919884929,-0.0106216173823935,0,0,0,0.081382745029422,0.227004689659119,0,0,-0.006712502715159,0.0504062548110697,0,0,1.39268700844169,0,0.159813303326053,0.157777974483485,0,0.0262470184234499,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0.28512472831862,-0.144773249868532,0.0546784185337061,0,0,0,0.0524757585891035,0.0361830415099865,0,0.482156469144197,0.00193924860692279,-0.016780351020029,-0.460087408061709,0,-0.172849847642806,-0.0377240733324252,-0.315856096366495,-0.281031932676373,0.231021096652005,0.218920219979965,0,0.120782421682863,-0.0727473527154614,0.0222058311421141,-0.0198759411655909,0,-0.226108730557413,-0.14176669122683,0,0,0.205040303172687,-0.0165812212796398,0,0,0.230647806792238,-0.00854282274844895,0.128206484655205,-0.0530852601688724,0.0379025395690763,-0.110701598080415,0.411212087872211,0.139604923163732,0.00924546304910786,0.366151066882496,0.0361830415099865,0,-0.0467838195446959,-0.0316897477111256,0.0134215819939694,-0.192451066715231,0.00328755868966754,-0.138335080670351,0.00123771895887871,0.0361830415099865,-0.0218147809947995,-0.092867147091511,0.0361830415099865,0,0.0182641451889151,0,0,0,0,0.156675748297206,-0.029765467365179,0.0279332668325067,0.0387156635362388,0,-0.0680595167571685,0.0506820706309161,-0.161500467806694,0,-0.109059725803918,0.164174147406978,-0.0471780217632726,-0.0722798851826438,0,-0.004482405929766,0.0519006970096763,0.085905434259017,-0.150823580299954,0.0710930525552822,-0.173384981624017,-0.101899699887883,-0.0290154258501163,0.366189393622276,-0.0462983105369423,0.821667479170394,0,0.24993424975368,-0.549958252254417,-0.0698463931470521,-0.102585448097049,0.0361830415099865,0.188948842621726,0,-0.206295075390881,0,-0.105276501541096,0.0660472003892024,-0.338694555874364,0.0680758284506002,0,-0.287502725940342,-0.0894523328511703,0.0361830415099865,0.02573985428124,0.0347443112970603,0,0.313740689250452,-0.100654590452256,0.0423309848305366,0.260744701991804,0,0.257793462467332,0,0.0361830415099865,0.0453729674908442,0.0154200928336311,0,0.040097233803023,0.0581670765525381,-0.0367906313326215,-0.0797880319249475,0.100594818706322,0,0.0604650426063315,0,0.156675748297206,-0.129049628362853,0.249865561327883,-0.291508333232882,-0.0966505931895496,0,-0.0905312886992625,0,0,0.216402000742035,0,0.111374452135354,0,0,0.171651281284005,0.0203483814544482,0,0.0180915207549932,0.25089613059802,0.0850795562934158,0,0,0,0,0,0,0.0177645514346063,-0.0180278101032354,-0.00919094907581813,0,-0.0849400460243712,0,0.0361830415099865,0,0,0.156675748297206,0.062016072996335,0,0.182215346810437,0.679148436723227,0.00851598412632955,0.239324459307541,0.0647699396835535,0,0,0,0.0134639572830862,0.0259507977418371,0.0361830415099865,0.0973246533389292,0,0,0,0,-0.0165590097529644,0,0,0.0180915207549932,0.0347909900181234,0.0428643616526584,-0.148263414120395,0,0,0,-0.27695440160179,0,0,0.100594818706322,0.0504255088588441,-0.00631429196267774,0,0,0.244072261778492,0,-0.0363123373295211,-0.0119998995105945,0.0361830415099865,0.125588437279517,0.267043298752729,0.00132624634534051,0,0.0695819800362469,-0.225164090279901,0,0.0679515990756472,0.0475978075913883,-0.00819308361309617,0,0.0205920403439913,0,0,0,0,0,0,0.321326550731548,0.102222030958079,0,0.0361830415099865,0,0,0,0,0.0361830415099865,0,0,0.0695819800362469,0.0396670963078356,0.00837076204781201,0.138113781667236,0,0,0,0,0,0,0.075454906622774,-0.174277676547418,0,0,0,0,0,0.0361830415099865,0,0,0.195944051102692,0,0,0,0,0,-0.0608093197326186,0,0,0,0.0361830415099865,-0.564807121153884,0,0,-0.241179090683527,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0333566622617583,-0.328870211458179,0,0.0361830415099865,0,0,0,0.0695819800362469,0,-0.145293418838983,0,0,0,0,0.06833097310146,0,0,0,0.359311387795934,0,0.0905781005116337,0.0361830415099865,0,0,0,0,0.00463541133273554,0,0,0,0,0,0,0,0,0,0,0,0.0911076734052185,0,0,0,0.483690684539307,0.0986378205321204,0.0361830415099865,0.0307414739206034,0,0,0.296319398372703,0,0,0,0,0,0,0.0189569853246341,0,0,0,0,0,0,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050297409353161,-0.0110705181317536,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0572418197824026,0,0,0,0,0,0,0.158092535704856,0.251165080280534,0.0101868026594245,0,0,0,0.164305157553881,0.328274990725751,0,0,0.100594818706322,0.422506885058725,0,0,0,0,0,0,0.229187359836561,0,0.0695819800362469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.117139968838441,0,0,0,0,0,0,0,0,0,0,0.103168044185505,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0.0695819800362469,0,0,0,0,0,0,0.100594818706322,-0.0340113632754165,0.129539879367107,0,0.0361830415099865,0,0,0,0,0.0361830415099865,0,0,0,0,0.050297409353161,0,0,0,0,0,0,0,0,0.0361830415099865,-0.0800184682686384,0,0,0,0.0970978152073283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,-0.248753118653189,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,-0.0482220752390542,0,-0.0481935907200406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.0361830415099865,0.0180915207549932,0,0,0.0695819800362469,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.0785195963582216,0,0,0,0,0,0,0,0,0,0,0.0283518427074782,0,-0.0251371376401399,0,0,0,0,0,0,0,0,0,0,0.0211519378105782,0,0,0,0.0361830415099865,0,0,0,0,0.606480951862443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116827145648576,-0.147383818532265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291306623572903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050851125706829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.035073017310878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0347909900181234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.013231317921906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271360584740169,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0180915207549932,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0682386730872495,0,0,0,0,0,0,0,0.239645877986961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00307440396974022,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135785612545892,0,0,0,-0.0101600186287312,0,0,0,0,0,0,0,0,0,0,0.0347909900181234,0,0,0,0,0,0,0,0.00325119149322546,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755100827774235,0.0180915207549932,0,0,0,0,0,0,0,0,0,0.0235198481557464,0.0180915207549932,0,0,0,0,0,0,0.0647699396835535,0,0,0,0,0,0,0,0,0,0,-0.0146435797720743,0,0,0.0583073502292065,0,-0.074231974880255,0.0695819800362469,0,0,0,0,0,0.04052089828776,0,0,0,0,0,0,0,0,0,0,-0.00389320621454502,0,0,0.0448768443865429,0,0,0,0,0,0,0.129539879367107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.179477276616643,0,-0.0794167199990923,-0.0687996977962638,0,0,-0.223724927434896,0,-0.00401369906683575,-0.00621225175897694,0,0,0.170649486050331,-0.390959116464622,0.129539879367107,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102884980130428,0.0361830415099865,0,0,-0.0568589461625992,-0.0402882757580083,0,-0.10726502925864,0.0361830415099865,0,-0.0977216157656522,0,0,0,0.0862559394368503 | |repeat_enrich_byname=0,0,0,0,0.031504528129401,0,0.25089613059802,0.0695819800362469,0,0.0695819800362469,0.0361830415099865,0.0361830415099865,0,0.20633608837101,0,0,-0.0179915154490036,0,0.0504212334403652,-0.107332101013485,0.0347909900181234,0,0.108724206891226,0,0.100594818706322,0,0,0,0,0.0361830415099865,0,0,0.747882568212307,0,0.131802795221122,0.0528825107731167,0,0.0361830415099865,0,0,0.272051239453461,0,0.093562470416142,-0.0321612195673817,0,0,0,0,0.191342256411925,0,-0.0846964422837541,-0.0465371268134308,0.114395408239542,0.259542919884929,-0.0106216173823935,0,0,0,0.081382745029422,0.227004689659119,0,0,-0.006712502715159,0.0504062548110697,0,0,1.39268700844169,0,0.159813303326053,0.157777974483485,0,0.0262470184234499,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0.28512472831862,-0.144773249868532,0.0546784185337061,0,0,0,0.0524757585891035,0.0361830415099865,0,0.482156469144197,0.00193924860692279,-0.016780351020029,-0.460087408061709,0,-0.172849847642806,-0.0377240733324252,-0.315856096366495,-0.281031932676373,0.231021096652005,0.218920219979965,0,0.120782421682863,-0.0727473527154614,0.0222058311421141,-0.0198759411655909,0,-0.226108730557413,-0.14176669122683,0,0,0.205040303172687,-0.0165812212796398,0,0,0.230647806792238,-0.00854282274844895,0.128206484655205,-0.0530852601688724,0.0379025395690763,-0.110701598080415,0.411212087872211,0.139604923163732,0.00924546304910786,0.366151066882496,0.0361830415099865,0,-0.0467838195446959,-0.0316897477111256,0.0134215819939694,-0.192451066715231,0.00328755868966754,-0.138335080670351,0.00123771895887871,0.0361830415099865,-0.0218147809947995,-0.092867147091511,0.0361830415099865,0,0.0182641451889151,0,0,0,0,0.156675748297206,-0.029765467365179,0.0279332668325067,0.0387156635362388,0,-0.0680595167571685,0.0506820706309161,-0.161500467806694,0,-0.109059725803918,0.164174147406978,-0.0471780217632726,-0.0722798851826438,0,-0.004482405929766,0.0519006970096763,0.085905434259017,-0.150823580299954,0.0710930525552822,-0.173384981624017,-0.101899699887883,-0.0290154258501163,0.366189393622276,-0.0462983105369423,0.821667479170394,0,0.24993424975368,-0.549958252254417,-0.0698463931470521,-0.102585448097049,0.0361830415099865,0.188948842621726,0,-0.206295075390881,0,-0.105276501541096,0.0660472003892024,-0.338694555874364,0.0680758284506002,0,-0.287502725940342,-0.0894523328511703,0.0361830415099865,0.02573985428124,0.0347443112970603,0,0.313740689250452,-0.100654590452256,0.0423309848305366,0.260744701991804,0,0.257793462467332,0,0.0361830415099865,0.0453729674908442,0.0154200928336311,0,0.040097233803023,0.0581670765525381,-0.0367906313326215,-0.0797880319249475,0.100594818706322,0,0.0604650426063315,0,0.156675748297206,-0.129049628362853,0.249865561327883,-0.291508333232882,-0.0966505931895496,0,-0.0905312886992625,0,0,0.216402000742035,0,0.111374452135354,0,0,0.171651281284005,0.0203483814544482,0,0.0180915207549932,0.25089613059802,0.0850795562934158,0,0,0,0,0,0,0.0177645514346063,-0.0180278101032354,-0.00919094907581813,0,-0.0849400460243712,0,0.0361830415099865,0,0,0.156675748297206,0.062016072996335,0,0.182215346810437,0.679148436723227,0.00851598412632955,0.239324459307541,0.0647699396835535,0,0,0,0.0134639572830862,0.0259507977418371,0.0361830415099865,0.0973246533389292,0,0,0,0,-0.0165590097529644,0,0,0.0180915207549932,0.0347909900181234,0.0428643616526584,-0.148263414120395,0,0,0,-0.27695440160179,0,0,0.100594818706322,0.0504255088588441,-0.00631429196267774,0,0,0.244072261778492,0,-0.0363123373295211,-0.0119998995105945,0.0361830415099865,0.125588437279517,0.267043298752729,0.00132624634534051,0,0.0695819800362469,-0.225164090279901,0,0.0679515990756472,0.0475978075913883,-0.00819308361309617,0,0.0205920403439913,0,0,0,0,0,0,0.321326550731548,0.102222030958079,0,0.0361830415099865,0,0,0,0,0.0361830415099865,0,0,0.0695819800362469,0.0396670963078356,0.00837076204781201,0.138113781667236,0,0,0,0,0,0,0.075454906622774,-0.174277676547418,0,0,0,0,0,0.0361830415099865,0,0,0.195944051102692,0,0,0,0,0,-0.0608093197326186,0,0,0,0.0361830415099865,-0.564807121153884,0,0,-0.241179090683527,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0333566622617583,-0.328870211458179,0,0.0361830415099865,0,0,0,0.0695819800362469,0,-0.145293418838983,0,0,0,0,0.06833097310146,0,0,0,0.359311387795934,0,0.0905781005116337,0.0361830415099865,0,0,0,0,0.00463541133273554,0,0,0,0,0,0,0,0,0,0,0,0.0911076734052185,0,0,0,0.483690684539307,0.0986378205321204,0.0361830415099865,0.0307414739206034,0,0,0.296319398372703,0,0,0,0,0,0,0.0189569853246341,0,0,0,0,0,0,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050297409353161,-0.0110705181317536,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0572418197824026,0,0,0,0,0,0,0.158092535704856,0.251165080280534,0.0101868026594245,0,0,0,0.164305157553881,0.328274990725751,0,0,0.100594818706322,0.422506885058725,0,0,0,0,0,0,0.229187359836561,0,0.0695819800362469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.117139968838441,0,0,0,0,0,0,0,0,0,0,0.103168044185505,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0.0695819800362469,0,0,0,0,0,0,0.100594818706322,-0.0340113632754165,0.129539879367107,0,0.0361830415099865,0,0,0,0,0.0361830415099865,0,0,0,0,0.050297409353161,0,0,0,0,0,0,0,0,0.0361830415099865,-0.0800184682686384,0,0,0,0.0970978152073283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,-0.248753118653189,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,-0.0482220752390542,0,-0.0481935907200406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.0361830415099865,0.0180915207549932,0,0,0.0695819800362469,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.0785195963582216,0,0,0,0,0,0,0,0,0,0,0.0283518427074782,0,-0.0251371376401399,0,0,0,0,0,0,0,0,0,0,0.0211519378105782,0,0,0,0.0361830415099865,0,0,0,0,0.606480951862443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116827145648576,-0.147383818532265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291306623572903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050851125706829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.035073017310878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0347909900181234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.013231317921906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271360584740169,0,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0180915207549932,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0682386730872495,0,0,0,0,0,0,0,0.239645877986961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00307440396974022,0,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135785612545892,0,0,0,-0.0101600186287312,0,0,0,0,0,0,0,0,0,0,0.0347909900181234,0,0,0,0,0,0,0,0.00325119149322546,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0180915207549932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755100827774235,0.0180915207549932,0,0,0,0,0,0,0,0,0,0.0235198481557464,0.0180915207549932,0,0,0,0,0,0,0.0647699396835535,0,0,0,0,0,0,0,0,0,0,-0.0146435797720743,0,0,0.0583073502292065,0,-0.074231974880255,0.0695819800362469,0,0,0,0,0,0.04052089828776,0,0,0,0,0,0,0,0,0,0,-0.00389320621454502,0,0,0.0448768443865429,0,0,0,0,0,0,0.129539879367107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.179477276616643,0,-0.0794167199990923,-0.0687996977962638,0,0,-0.223724927434896,0,-0.00401369906683575,-0.00621225175897694,0,0,0.170649486050331,-0.390959116464622,0.129539879367107,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102884980130428,0.0361830415099865,0,0,-0.0568589461625992,-0.0402882757580083,0,-0.10726502925864,0.0361830415099865,0,-0.0977216157656522,0,0,0,0.0862559394368503 | ||
Line 75: | Line 83: | ||
|rna_tube_id=1.16E+09 | |rna_tube_id=1.16E+09 | ||
|rna_weight_ug=80 | |rna_weight_ug=80 | ||
|rnaseq_library_id=SRhi10003.ACTTGA | |||
|sample_age=39 | |sample_age=39 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 98: | Line 107: | ||
|top_motifs=ZNF238:2.14110736379;GZF1:1.55302192738;NKX2-2,8:1.51476974551;ALX4:1.27574559062;TFAP4:1.19401129772;UFEwm:1.13573199018;NKX6-1,2:1.13414504642;RXR{A,B,G}:1.12090533091;HOX{A4,D4}:1.10385104389;HAND1,2:1.06711420311;TP53:1.00141525195;PAX1,9:0.967216245342;YY1:0.953555300585;EN1,2:0.923132152645;GFI1:0.920155952869;LHX3,4:0.908189134647;HSF1,2:0.89222429075;TAL1_TCF{3,4,12}:0.881987699111;TEAD1:0.864765591767;SPZ1:0.830976516144;KLF4:0.827976970761;MZF1:0.773204479546;GTF2I:0.772216833699;GFI1B:0.740902313156;ESR1:0.71522424007;GATA4:0.703939178338;NKX3-2:0.700244434974;NFATC1..3:0.689172002973;MYBL2:0.683440722776;PRDM1:0.672498548156;FOXL1:0.666368036749;CDC5L:0.66103971174;ARID5B:0.658436021649;PDX1:0.65343790442;STAT1,3:0.585038041967;MYB:0.577624924755;TFCP2:0.567235299077;HES1:0.565072879156;TBX4,5:0.543803334954;EVI1:0.542293449763;TOPORS:0.513034256386;EBF1:0.512193289864;FOXO1,3,4:0.50905699096;ZIC1..3:0.50134071588;HMGA1,2:0.485703281079;POU3F1..4:0.47882073552;SREBF1,2:0.472090892002;PATZ1:0.458456455938;GTF2A1,2:0.456747292257;TLX1..3_NFIC{dimer}:0.455860572337;MAZ:0.438947499657;TFDP1:0.437521997921;NR3C1:0.430135583324;XBP1:0.429078913763;SOX17:0.409201983466;FOX{I1,J2}:0.405850509049;ZNF384:0.40292069646;FOXD3:0.397114813487;DMAP1_NCOR{1,2}_SMARC:0.396957617351;HBP1_HMGB_SSRP1_UBTF:0.376614007798;SRF:0.3718383519;NFIX:0.362471140749;ZNF423:0.343516815025;ZBTB6:0.331054209448;TEF:0.322719794479;NANOG{mouse}:0.317409387366;FOXQ1:0.304280352743;NFE2L2:0.299491517931;TLX2:0.29553222027;TFAP2{A,C}:0.28260985029;IRF1,2:0.276048892695;bHLH_family:0.248756902475;ZNF143:0.23004636995;NKX2-3_NKX2-5:0.228229370596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220972842139;RREB1:0.210321453764;ATF6:0.206235623192;POU5F1:0.195749039745;AHR_ARNT_ARNT2:0.192458568459;NRF1:0.192187561445;E2F1..5:0.191116892867;MYFfamily:0.176706001875;FOXM1:0.170133111803;NKX3-1:0.160312701375;GCM1,2:0.146390371868;HLF:0.144255135269;ELK1,4_GABP{A,B1}:0.142930321808;STAT5{A,B}:0.137591956875;SP1:0.135667309411;NR1H4:0.125559611241;HNF4A_NR2F1,2:0.120220036709;HMX1:0.114605229731;AIRE:0.110380206056;HOX{A5,B5}:0.0889327155707;BACH2:0.0844685539354;PAX5:0.0725837614139;HNF1A:0.0673254591939;LEF1_TCF7_TCF7L1,2:0.066015788539;MTE{core}:0.0653479682656;RFX1:0.0593856750466;ZNF148:0.044007959303;PAX4:0.0412303127143;PAX8:0.0394431606672;SMAD1..7,9:0.0302824665445;ESRRA:0.0244849270532;NFE2L1:0.0140383820342;FOS_FOS{B,L1}_JUN{B,D}:0.0123216106225;HOX{A6,A7,B6,B7}:-0.00257679816896;GLI1..3:-0.00406608214916;RXRA_VDR{dimer}:-0.00461690021376;IKZF1:-0.00788179499416;MTF1:-0.0197547804529;NFY{A,B,C}:-0.0201336993561;HIC1:-0.0258862165993;NHLH1,2:-0.0369799321552;ALX1:-0.0428602156547;TFAP2B:-0.0442531648831;NR6A1:-0.0477654818367;MAFB:-0.0698529223647;T:-0.0748810085053;TBP:-0.0809880029576;TGIF1:-0.109097415241;ADNP_IRX_SIX_ZHX:-0.11038993327;NFE2:-0.12809768582;PRRX1,2:-0.131014153235;FOXP1:-0.156586416274;REST:-0.163335835994;XCPE1{core}:-0.178085694931;RBPJ:-0.17995003701;EGR1..3:-0.185630556192;HOXA9_MEIS1:-0.216756482172;DBP:-0.220363275731;FOSL2:-0.222739085047;RUNX1..3:-0.239829109376;CEBPA,B_DDIT3:-0.263283434238;STAT2,4,6:-0.281364708664;POU2F1..3:-0.28372456246;NKX2-1,4:-0.291084490977;RFX2..5_RFXANK_RFXAP:-0.296349326204;MED-1{core}:-0.313516811217;NFKB1_REL_RELA:-0.321690142349;PAX3,7:-0.325007808219;PBX1:-0.356509103438;ZFP161:-0.362957132899;IRF7:-0.390618326973;CREB1:-0.401302052365;ELF1,2,4:-0.405180504925;CRX:-0.407412546613;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.41678434138;MEF2{A,B,C,D}:-0.421839385013;BPTF:-0.428427336885;CDX1,2,4:-0.448337489734;SPI1:-0.448829626166;ONECUT1,2:-0.452823556285;FOXN1:-0.465927912159;FOX{D1,D2}:-0.473683797753;BREu{core}:-0.501425259409;HIF1A:-0.510834549759;SPIB:-0.520958756504;ZBTB16:-0.530204284816;PAX2:-0.530870841443;JUN:-0.532025072624;ATF5_CREB3:-0.546720839067;ATF4:-0.567938911817;CUX2:-0.585799649;ETS1,2:-0.617297947178;PITX1..3:-0.620386915663;OCT4_SOX2{dimer}:-0.654519925508;LMO2:-0.658766195302;NFIL3:-0.660386465234;FOXA2:-0.664342835218;PPARG:-0.70197628389;SNAI1..3:-0.719359573716;SOX5:-0.754159409432;AR:-0.779588194765;IKZF2:-0.804029810365;ATF2:-0.812451068194;NR5A1,2:-0.82083052466;EP300:-0.860253647131;POU1F1:-0.878917886497;GATA6:-0.879865057221;PAX6:-0.905842288081;SOX2:-0.917244530833;VSX1,2:-0.92265492149;ZEB1:-1.01218802404;FOXP3:-1.01367684831;POU6F1:-1.04462708209;MYOD1:-1.09138114776;SOX{8,9,10}:-1.13046628727;RORA:-1.20555634234;NANOG:-1.25325672126;FOX{F1,F2,J1}:-1.51067432229 | |top_motifs=ZNF238:2.14110736379;GZF1:1.55302192738;NKX2-2,8:1.51476974551;ALX4:1.27574559062;TFAP4:1.19401129772;UFEwm:1.13573199018;NKX6-1,2:1.13414504642;RXR{A,B,G}:1.12090533091;HOX{A4,D4}:1.10385104389;HAND1,2:1.06711420311;TP53:1.00141525195;PAX1,9:0.967216245342;YY1:0.953555300585;EN1,2:0.923132152645;GFI1:0.920155952869;LHX3,4:0.908189134647;HSF1,2:0.89222429075;TAL1_TCF{3,4,12}:0.881987699111;TEAD1:0.864765591767;SPZ1:0.830976516144;KLF4:0.827976970761;MZF1:0.773204479546;GTF2I:0.772216833699;GFI1B:0.740902313156;ESR1:0.71522424007;GATA4:0.703939178338;NKX3-2:0.700244434974;NFATC1..3:0.689172002973;MYBL2:0.683440722776;PRDM1:0.672498548156;FOXL1:0.666368036749;CDC5L:0.66103971174;ARID5B:0.658436021649;PDX1:0.65343790442;STAT1,3:0.585038041967;MYB:0.577624924755;TFCP2:0.567235299077;HES1:0.565072879156;TBX4,5:0.543803334954;EVI1:0.542293449763;TOPORS:0.513034256386;EBF1:0.512193289864;FOXO1,3,4:0.50905699096;ZIC1..3:0.50134071588;HMGA1,2:0.485703281079;POU3F1..4:0.47882073552;SREBF1,2:0.472090892002;PATZ1:0.458456455938;GTF2A1,2:0.456747292257;TLX1..3_NFIC{dimer}:0.455860572337;MAZ:0.438947499657;TFDP1:0.437521997921;NR3C1:0.430135583324;XBP1:0.429078913763;SOX17:0.409201983466;FOX{I1,J2}:0.405850509049;ZNF384:0.40292069646;FOXD3:0.397114813487;DMAP1_NCOR{1,2}_SMARC:0.396957617351;HBP1_HMGB_SSRP1_UBTF:0.376614007798;SRF:0.3718383519;NFIX:0.362471140749;ZNF423:0.343516815025;ZBTB6:0.331054209448;TEF:0.322719794479;NANOG{mouse}:0.317409387366;FOXQ1:0.304280352743;NFE2L2:0.299491517931;TLX2:0.29553222027;TFAP2{A,C}:0.28260985029;IRF1,2:0.276048892695;bHLH_family:0.248756902475;ZNF143:0.23004636995;NKX2-3_NKX2-5:0.228229370596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220972842139;RREB1:0.210321453764;ATF6:0.206235623192;POU5F1:0.195749039745;AHR_ARNT_ARNT2:0.192458568459;NRF1:0.192187561445;E2F1..5:0.191116892867;MYFfamily:0.176706001875;FOXM1:0.170133111803;NKX3-1:0.160312701375;GCM1,2:0.146390371868;HLF:0.144255135269;ELK1,4_GABP{A,B1}:0.142930321808;STAT5{A,B}:0.137591956875;SP1:0.135667309411;NR1H4:0.125559611241;HNF4A_NR2F1,2:0.120220036709;HMX1:0.114605229731;AIRE:0.110380206056;HOX{A5,B5}:0.0889327155707;BACH2:0.0844685539354;PAX5:0.0725837614139;HNF1A:0.0673254591939;LEF1_TCF7_TCF7L1,2:0.066015788539;MTE{core}:0.0653479682656;RFX1:0.0593856750466;ZNF148:0.044007959303;PAX4:0.0412303127143;PAX8:0.0394431606672;SMAD1..7,9:0.0302824665445;ESRRA:0.0244849270532;NFE2L1:0.0140383820342;FOS_FOS{B,L1}_JUN{B,D}:0.0123216106225;HOX{A6,A7,B6,B7}:-0.00257679816896;GLI1..3:-0.00406608214916;RXRA_VDR{dimer}:-0.00461690021376;IKZF1:-0.00788179499416;MTF1:-0.0197547804529;NFY{A,B,C}:-0.0201336993561;HIC1:-0.0258862165993;NHLH1,2:-0.0369799321552;ALX1:-0.0428602156547;TFAP2B:-0.0442531648831;NR6A1:-0.0477654818367;MAFB:-0.0698529223647;T:-0.0748810085053;TBP:-0.0809880029576;TGIF1:-0.109097415241;ADNP_IRX_SIX_ZHX:-0.11038993327;NFE2:-0.12809768582;PRRX1,2:-0.131014153235;FOXP1:-0.156586416274;REST:-0.163335835994;XCPE1{core}:-0.178085694931;RBPJ:-0.17995003701;EGR1..3:-0.185630556192;HOXA9_MEIS1:-0.216756482172;DBP:-0.220363275731;FOSL2:-0.222739085047;RUNX1..3:-0.239829109376;CEBPA,B_DDIT3:-0.263283434238;STAT2,4,6:-0.281364708664;POU2F1..3:-0.28372456246;NKX2-1,4:-0.291084490977;RFX2..5_RFXANK_RFXAP:-0.296349326204;MED-1{core}:-0.313516811217;NFKB1_REL_RELA:-0.321690142349;PAX3,7:-0.325007808219;PBX1:-0.356509103438;ZFP161:-0.362957132899;IRF7:-0.390618326973;CREB1:-0.401302052365;ELF1,2,4:-0.405180504925;CRX:-0.407412546613;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.41678434138;MEF2{A,B,C,D}:-0.421839385013;BPTF:-0.428427336885;CDX1,2,4:-0.448337489734;SPI1:-0.448829626166;ONECUT1,2:-0.452823556285;FOXN1:-0.465927912159;FOX{D1,D2}:-0.473683797753;BREu{core}:-0.501425259409;HIF1A:-0.510834549759;SPIB:-0.520958756504;ZBTB16:-0.530204284816;PAX2:-0.530870841443;JUN:-0.532025072624;ATF5_CREB3:-0.546720839067;ATF4:-0.567938911817;CUX2:-0.585799649;ETS1,2:-0.617297947178;PITX1..3:-0.620386915663;OCT4_SOX2{dimer}:-0.654519925508;LMO2:-0.658766195302;NFIL3:-0.660386465234;FOXA2:-0.664342835218;PPARG:-0.70197628389;SNAI1..3:-0.719359573716;SOX5:-0.754159409432;AR:-0.779588194765;IKZF2:-0.804029810365;ATF2:-0.812451068194;NR5A1,2:-0.82083052466;EP300:-0.860253647131;POU1F1:-0.878917886497;GATA6:-0.879865057221;PAX6:-0.905842288081;SOX2:-0.917244530833;VSX1,2:-0.92265492149;ZEB1:-1.01218802404;FOXP3:-1.01367684831;POU6F1:-1.04462708209;MYOD1:-1.09138114776;SOX{8,9,10}:-1.13046628727;RORA:-1.20555634234;NANOG:-1.25325672126;FOX{F1,F2,J1}:-1.51067432229 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11249-116E7;search_select_hide=table117:FF:11249-116E7 | |||
}} | }} |
Latest revision as of 16:27, 3 June 2020
Name: | Pancreatic stromal cells, donor1 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs10877 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
---|
ExpandCAGE Accession numbers |
---|
ExpandDownload raw sequence, BAM & CTSS |
---|
ExpandHumanCAGEScan Download raw sequence, BAM & CTSS |
---|
ExpandRNA-Seq Accession numbers |
---|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10877
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10877
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10877
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000042 pancreatic stromal cell
FF:0000146 human stromal cell of pancreas sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002574 (stromal cell of pancreas)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000042 (pancreatic stromal cell)
0000146 (human stromal cell of pancreas sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)