FFCP PHASE1:Hg19::chr11:120008074..120008088,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:120008074..120008088,- to FFCP PHASE1:Hg19::chr11:120008074..120008088,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23650 | |EntrezGene=23650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=17274 | |HGNC=17274 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z5V8 | |UniProt=B7Z5V8 | ||
|association_with_transcript=131bp_to_AK299472_5end | |||
|cluster_id=chr11:120008074..120008088,- | |||
|coexpression_cluster_id=C1613 | |||
|description=CAGE_peak_13_at_TRIM29_5end | |||
|id=chr11:120008074..120008088,- | |||
|ontology_enrichment_celltype=CL:0002076!1.52e-23!43;CL:0000066!1.72e-19!254;CL:0000223!1.49e-16!59;CL:0002159!8.16e-16!13;CL:0002251!1.20e-13!21;CL:0000622!3.61e-11!5;CL:0000244!2.32e-09!4;CL:0000731!2.32e-09!4;CL:0002368!3.03e-09!13;CL:0000154!3.23e-09!6;CL:0000068!1.45e-07!3;CL:0000069!1.45e-07!3;CL:0000307!1.45e-07!3;CL:0000377!1.45e-07!3;CL:0002166!3.93e-07!3;CL:0000362!4.32e-07!8;CL:0002623!6.72e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002159;2.72e-24;14!CL:0000317;1.55e-15;2!CL:1000448;1.55e-15;2!CL:0002308;1.55e-15;2!CL:0000575;1.55e-15;2!CL:0002140;1.55e-15;2!CL:0000362;5.83e-13;9!CL:0000240;3.45e-11;6!CL:0000311;3.45e-11;6!CL:0000079;3.45e-11;6!CL:0000237;3.45e-11;6!CL:0000307;1.16e-10;3!CL:0002231;2.16e-10;3!CL:0002077;9.88e-09;34!CL:0002336;2.05e-08;1!CL:0002261;2.05e-08;1!CL:0002170;2.05e-08;1!CL:0000244;2.79e-08;4!CL:0000731;2.79e-08;4!CL:0002202;9.46e-08;9!CL:0002632;9.46e-08;9!CL:0000622;9.97e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,3.10e-24,14;CL:0000317,6.94e-16,2;CL:1000448,6.94e-16,2;CL:0002308,6.94e-16,2;CL:0002140,6.94e-16,2;CL:0000575,1.25e-15,2;CL:0000362,5.49e-13,9;CL:0000240,3.78e-11,6;CL:0000311,3.78e-11,6;CL:0000079,3.78e-11,6;CL:0000237,3.78e-11,6;CL:0000036,3.78e-11,6;CL:0000357,3.78e-11,6;CL:0000114,3.78e-11,6;CL:0000068,1.16e-10,3;CL:0000069,1.16e-10,3;CL:0000307,1.16e-10,3;CL:0000377,1.16e-10,3;CL:0002231,2.16e-10,3;CL:0000066,1.34e-09,253;CL:0002077,1.62e-09,34;CL:0002336,1.27e-08,1;CL:0002261,1.27e-08,1;CL:0002170,1.27e-08,1;CL:0000244,2.06e-08,4;CL:0000731,2.06e-08,4;CL:0002202,1.05e-07,9;CL:0002632,1.05e-07,9;CL:0002076,1.38e-07,42;CL:0000622,7.28e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000357;3.45e-11;6!CL:0000114;3.45e-11;6!CL:0000377;1.16e-10;3!UBERON:0009143;7.83e-09;1 | |||
|ontology_enrichment_disease=DOID:1749!8.60e-10!14;DOID:305!4.65e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:3151;2.05e-08;1!DOID:3149;2.05e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,4.07e-08,1;DOID:3149,4.07e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!4.71e-24!72;UBERON:0001557!1.61e-21!19;UBERON:0001737!1.85e-18!9;UBERON:0000065!7.09e-18!53;UBERON:0004119!8.72e-18!169;UBERON:0000925!8.72e-18!169;UBERON:0006595!8.72e-18!169;UBERON:0000072!1.85e-16!46;UBERON:0000166!1.23e-13!21;UBERON:0000161!1.23e-12!35;UBERON:0001007!5.95e-12!155;UBERON:0001555!5.95e-12!155;UBERON:0007026!5.95e-12!155;UBERON:0001041!8.85e-12!98;UBERON:0000974!1.03e-11!10;UBERON:0000077!1.94e-11!130;UBERON:0000165!3.13e-11!28;UBERON:0000930!3.13e-11!28;UBERON:0004921!9.80e-11!129;UBERON:0004185!9.80e-11!129;UBERON:0000365!1.02e-10!5;UBERON:0008947!1.13e-10!38;UBERON:0003258!1.13e-10!38;UBERON:0003729!2.76e-10!5;UBERON:0005631!7.05e-10!14;UBERON:0000158!7.05e-10!14;UBERON:0003102!5.53e-09!95;UBERON:0005910!7.55e-09!6;UBERON:0003343!3.25e-08!4;UBERON:0004785!3.25e-08!4;UBERON:0006562!3.73e-08!11;UBERON:0000344!2.55e-07!12;UBERON:0001444!2.85e-07!48;UBERON:0000062!3.89e-07!511;UBERON:0000064!4.88e-07!219;UBERON:0003408!9.60e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.73e-19;9!UBERON:0001557;1.73e-19;9!UBERON:0002419;1.55e-15;2!UBERON:0007771;1.55e-15;2!UBERON:0003297;1.55e-15;2!UBERON:0001821;1.55e-15;2!UBERON:0003487;1.55e-15;2!UBERON:0001820;1.55e-15;2!UBERON:0000072;6.34e-11;37!UBERON:0000065;5.03e-09;44!UBERON:0000964;3.29e-08;4!UBERON:0010409;3.29e-08;4!UBERON:0001003;7.85e-08;15!UBERON:0007376;7.85e-08;15!UBERON:0000365;8.76e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.15e-19,9;UBERON:0002419,6.94e-16,2;UBERON:0007771,6.94e-16,2;UBERON:0003297,6.94e-16,2;UBERON:0001821,6.94e-16,2;UBERON:0003487,6.94e-16,2;UBERON:0001820,6.94e-16,2;UBERON:0005089,6.94e-16,2;UBERON:0005088,6.94e-16,2;UBERON:0001557,5.14e-13,19;UBERON:0000072,7.02e-11,47;UBERON:0008947,8.26e-11,38;UBERON:0003258,8.26e-11,38;UBERON:0003102,8.38e-10,99;UBERON:0000065,2.72e-09,54;UBERON:0004119,2.37e-08,160;UBERON:0000925,2.37e-08,160;UBERON:0006595,2.37e-08,160;UBERON:0000964,2.96e-08,4;UBERON:0010409,2.96e-08,4;UBERON:0004348,2.96e-08,4;UBERON:0005427,2.96e-08,4;UBERON:0001004,5.22e-08,74;UBERON:0001003,7.58e-08,15;UBERON:0007376,7.58e-08,15;UBERON:0007383,7.58e-08,15;UBERON:0001007,5.74e-07,145;UBERON:0001555,5.74e-07,145;UBERON:0007026,5.74e-07,145;UBERON:0000365,6.87e-07,5 | |||
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| ||
|short_description=p13@TRIM29 | |||
}} | }} |
Latest revision as of 04:52, 16 September 2015
Short description: | p13@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_TRIM29_5end |
Coexpression cluster: | C1613_tongue_Sebocyte_esophagus_amniotic_throat_Prostate_Urothelial |
Association with transcript: | 131bp_to_AK299472_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | B7Z5V8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 2.15e-19 | 9 |
skin gland | 6.94e-16 | 2 |
epidermis gland | 6.94e-16 | 2 |
gland of integumental system | 6.94e-16 | 2 |
sebaceous gland | 6.94e-16 | 2 |
skin sebaceous gland | 6.94e-16 | 2 |
sweat gland | 6.94e-16 | 2 |
sweat gland placode | 6.94e-16 | 2 |
sebaceous gland placode | 6.94e-16 | 2 |
upper respiratory tract | 5.14e-13 | 19 |
segment of respiratory tract | 7.02e-11 | 47 |
respiratory primordium | 8.26e-11 | 38 |
endoderm of foregut | 8.26e-11 | 38 |
surface structure | 8.38e-10 | 99 |
respiratory tract | 2.72e-09 | 54 |
endoderm-derived structure | 2.37e-08 | 160 |
endoderm | 2.37e-08 | 160 |
presumptive endoderm | 2.37e-08 | 160 |
cornea | 2.96e-08 | 4 |
eye surface | 2.96e-08 | 4 |
optic eminence | 2.96e-08 | 4 |
corneal primordium | 2.96e-08 | 4 |
respiratory system | 5.22e-08 | 74 |
skin epidermis | 7.58e-08 | 15 |
outer epithelium | 7.58e-08 | 15 |
enveloping layer of ectoderm | 7.58e-08 | 15 |
digestive system | 5.74e-07 | 145 |
digestive tract | 5.74e-07 | 145 |
primitive gut | 5.74e-07 | 145 |
urothelium | 6.87e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 4.07e-08 | 1 |
keratoacanthoma | 4.07e-08 | 1 |