FFCP PHASE1:Hg19::chr10:120261556..120261561,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr10:120261556..120261561,+ | |||
|coexpression_cluster_id=C1300 | |||
|description=CAGE_peak_at_chr10:120261556..120261561,+ | |||
|id=chr10:120261556..120261561,+ | |||
|ontology_enrichment_celltype=CL:0000223!1.57e-21!59;CL:0002076!4.48e-21!43;CL:0000066!5.72e-21!254;CL:0002368!1.69e-18!13;CL:0002159!6.95e-14!13;CL:0002202!8.05e-13!9;CL:0002632!8.05e-13!9;CL:0002328!9.96e-11!3;CL:0000068!1.20e-10!3;CL:0000069!1.20e-10!3;CL:0000307!1.20e-10!3;CL:0000377!1.20e-10!3;CL:0000076!2.21e-10!62;CL:0000362!1.02e-09!8;CL:0002231!6.64e-09!3;CL:0002327!5.65e-08!4;CL:0000317!2.69e-07!2;CL:1000448!2.69e-07!2;CL:0002308!2.69e-07!2;CL:0002140!2.69e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.04e-29;13!CL:0002202;6.16e-28;9!CL:0002632;6.16e-28;9!CL:0000307;8.09e-22;3!CL:0002328;1.23e-21;3!CL:0002336;1.93e-16;1!CL:0002261;1.93e-16;1!CL:0002170;1.93e-16;1!CL:0002076;1.08e-15;42!CL:0000240;4.84e-11;6!CL:0000311;4.84e-11;6!CL:0000079;4.84e-11;6!CL:0000237;4.84e-11;6!CL:0002251;1.90e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,9.81e-30,13;CL:0002202,6.16e-28,9;CL:0002632,6.16e-28,9;CL:0002076,8.54e-23,42;CL:0000068,7.68e-22,3;CL:0000069,7.68e-22,3;CL:0000307,7.68e-22,3;CL:0000377,7.68e-22,3;CL:0002328,1.29e-21,3;CL:0000223,1.27e-20,58;CL:0002336,1.93e-16,1;CL:0002261,1.93e-16,1;CL:0002170,1.93e-16,1;CL:0000240,5.64e-11,6;CL:0000311,5.64e-11,6;CL:0000079,5.64e-11,6;CL:0000237,5.64e-11,6;CL:0000036,5.64e-11,6;CL:0000357,5.64e-11,6;CL:0000114,5.64e-11,6;CL:0000066,1.36e-07,253;CL:0002251,1.81e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000377;8.09e-22;3!CL:0000223;3.82e-12;58!CL:0000357;4.84e-11;6!CL:0000114;4.84e-11;6!UBERON:0008814;4.70e-09;2!UBERON:0010056;4.70e-09;2 | |||
|ontology_enrichment_disease=DOID:1749!1.36e-20!14;DOID:305!3.33e-13!106;DOID:0050687!9.73e-11!143;DOID:7!2.05e-08!39;DOID:14566!9.70e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.78e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.62e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0003729!3.53e-16!5;UBERON:0003343!3.31e-13!4;UBERON:0004785!3.31e-13!4;UBERON:0004119!1.46e-11!169;UBERON:0000925!1.46e-11!169;UBERON:0006595!1.46e-11!169;UBERON:0000161!2.17e-11!35;UBERON:0004815!9.96e-11!3;UBERON:0002031!9.96e-11!3;UBERON:0001723!5.47e-10!3;UBERON:0001033!5.47e-10!3;UBERON:0010056!5.47e-10!3;UBERON:0001007!1.64e-09!155;UBERON:0001555!1.64e-09!155;UBERON:0007026!1.64e-09!155;UBERON:0000344!4.75e-09!12;UBERON:0003102!1.10e-08!95;UBERON:0001004!2.85e-08!72;UBERON:0002185!3.99e-08!4;UBERON:0001911!5.65e-08!4;UBERON:0005333!5.65e-08!4;UBERON:0008425!5.65e-08!4;UBERON:0005311!5.65e-08!4;UBERON:0007196!6.10e-08!14;UBERON:0001558!6.10e-08!14;UBERON:0002530!1.10e-07!59;UBERON:0005153!1.14e-07!37;UBERON:0000974!1.66e-07!10;UBERON:0002419!2.69e-07!2;UBERON:0007771!2.69e-07!2;UBERON:0003297!2.69e-07!2;UBERON:0001821!2.69e-07!2;UBERON:0003487!2.69e-07!2;UBERON:0001820!2.69e-07!2;UBERON:0005089!2.69e-07!2;UBERON:0005088!2.69e-07!2;UBERON:0000077!3.87e-07!130;UBERON:0002394!4.67e-07!4;UBERON:0003928!4.67e-07!4;UBERON:0000065!5.49e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.23e-21;3!UBERON:0002031;1.23e-21;3!UBERON:0007196;6.31e-17;15!UBERON:0001558;6.31e-17;15!UBERON:0003343;3.07e-16;4!UBERON:0004785;3.07e-16;4!UBERON:0002185;2.16e-13;5!UBERON:0003729;3.69e-11;13!UBERON:0000974;3.75e-11;6!UBERON:0003126;6.55e-10;7!UBERON:0001005;6.55e-10;7!UBERON:0000485;7.81e-10;7!UBERON:0000065;1.58e-08;44!UBERON:0005178;6.24e-08;34!UBERON:0002224;6.24e-08;34!UBERON:0000344;1.90e-07;20!UBERON:0005181;6.43e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.29e-21,3;UBERON:0002031,1.29e-21,3;UBERON:0007196,6.31e-17,15;UBERON:0001558,6.31e-17,15;UBERON:0003343,2.64e-16,4;UBERON:0004785,2.64e-16,4;UBERON:0002185,2.23e-13,5;UBERON:0003729,3.44e-11,13;UBERON:0000065,4.34e-10,54;UBERON:0003126,6.40e-10,7;UBERON:0001005,6.40e-10,7;UBERON:0001004,8.87e-10,74;UBERON:0000072,2.81e-08,47;UBERON:0000485,7.77e-08,9;UBERON:0005178,1.28e-07,34;UBERON:0002224,1.28e-07,34;UBERON:0000344,1.81e-07,20;UBERON:0005181,2.08e-07,35;UBERON:0000974,4.52e-07,10;UBERON:0004119,6.80e-07,160;UBERON:0000925,6.80e-07,160;UBERON:0006595,6.80e-07,160;UBERON:0008947,7.70e-07,38;UBERON:0003258,7.70e-07,38 | |||
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| ||
|short_description=p@chr10:120261556..120261561,+ | |||
}} | }} |
Latest revision as of 10:55, 23 July 2015
Short description: | p@chr10:120261556..120261561, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:120261556..120261561, + |
Coexpression cluster: | C1300_Tracheal_Bronchial_Small_Keratinocyte_Mammary_bronchial_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 9.81e-30 | 13 |
epithelial cell of tracheobronchial tree | 6.16e-28 | 9 |
epithelial cell of lower respiratory tract | 6.16e-28 | 9 |
endo-epithelial cell | 8.54e-23 | 42 |
duct epithelial cell | 7.68e-22 | 3 |
branched duct epithelial cell | 7.68e-22 | 3 |
tracheal epithelial cell | 7.68e-22 | 3 |
tracheoblast | 7.68e-22 | 3 |
bronchial epithelial cell | 1.29e-21 | 3 |
endodermal cell | 1.27e-20 | 58 |
buccal mucosa cell | 1.93e-16 | 1 |
endothelial cell of viscerocranial mucosa | 1.93e-16 | 1 |
keratinized cell of the oral mucosa | 1.93e-16 | 1 |
stratified squamous epithelial cell | 5.64e-11 | 6 |
keratin accumulating cell | 5.64e-11 | 6 |
stratified epithelial cell | 5.64e-11 | 6 |
keratinizing barrier epithelial cell | 5.64e-11 | 6 |
epithelial fate stem cell | 5.64e-11 | 6 |
stratified epithelial stem cell | 5.64e-11 | 6 |
surface ectodermal cell | 5.64e-11 | 6 |
epithelial cell | 1.36e-07 | 253 |
epithelial cell of alimentary canal | 1.81e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.29e-21 | 3 |
epithelium of bronchus | 1.29e-21 | 3 |
tracheobronchial tree | 6.31e-17 | 15 |
lower respiratory tract | 6.31e-17 | 15 |
mucosa of oral region | 2.64e-16 | 4 |
respiratory system mucosa | 2.64e-16 | 4 |
bronchus | 2.23e-13 | 5 |
mouth mucosa | 3.44e-11 | 13 |
respiratory tract | 4.34e-10 | 54 |
trachea | 6.40e-10 | 7 |
respiratory airway | 6.40e-10 | 7 |
respiratory system | 8.87e-10 | 74 |
segment of respiratory tract | 2.81e-08 | 47 |
simple columnar epithelium | 7.77e-08 | 9 |
thoracic cavity element | 1.28e-07 | 34 |
thoracic cavity | 1.28e-07 | 34 |
mucosa | 1.81e-07 | 20 |
thoracic segment organ | 2.08e-07 | 35 |
neck | 4.52e-07 | 10 |
endoderm-derived structure | 6.80e-07 | 160 |
endoderm | 6.80e-07 | 160 |
presumptive endoderm | 6.80e-07 | 160 |
respiratory primordium | 7.70e-07 | 38 |
endoderm of foregut | 7.70e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.62e-10 | 14 |