FFCP PHASE1:Hg19::chr10:103880002..103880070,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:103880002..103880070,- to FFCP PHASE1:Hg19::chr10:103880002..103880070,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8861 | |EntrezGene=8861 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6532 | |HGNC=6532 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=134bp_to_ENST00000490751_5end | |||
|cluster_id=chr10:103880002..103880070,- | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_4_at_LDB1_5end | |||
|id=chr10:103880002..103880070,- | |||
|ontology_enrichment_celltype=CL:0000037!1.38e-42!172;CL:0000566!1.38e-42!172;CL:0000988!1.51e-42!182;CL:0000738!3.26e-40!140;CL:0002032!6.07e-40!165;CL:0000837!6.07e-40!165;CL:0002087!1.72e-34!119;CL:0002031!2.04e-33!124;CL:0000763!1.77e-20!112;CL:0000049!1.77e-20!112;CL:0000766!2.82e-20!76;CL:0000838!1.06e-18!52;CL:0000542!1.17e-18!53;CL:0000051!1.17e-18!53;CL:0000557!5.89e-17!71;CL:0002057!5.18e-15!42;CL:0000839!7.07e-15!70;CL:0002009!3.64e-14!65;CL:0002194!3.67e-14!63;CL:0000576!3.67e-14!63;CL:0000040!3.67e-14!63;CL:0000559!3.67e-14!63;CL:0000115!4.66e-14!35;CL:0000860!4.76e-12!45;CL:0000084!1.17e-11!25;CL:0000827!1.17e-11!25;CL:0002139!1.91e-11!24;CL:0000791!3.65e-11!18;CL:0000789!3.65e-11!18;CL:0002420!3.65e-11!18;CL:0002419!3.65e-11!18;CL:0000790!3.65e-11!18;CL:0000048!2.41e-10!430;CL:0000134!4.44e-10!358;CL:0002320!4.55e-10!365;CL:0000723!5.48e-09!436;CL:0000071!5.58e-09!18;CL:0002546!5.58e-09!18;CL:0002078!1.14e-08!44;CL:0000034!2.49e-08!444;CL:0000625!1.81e-07!11;CL:0000219!6.83e-07!390;CL:0000945!7.73e-07!24;CL:0000826!7.73e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000115;2.43e-12;36!CL:0000084;6.89e-12;25!CL:0002139;1.41e-11;24!CL:0000542;1.73e-11;53!CL:0000791;2.90e-11;18!CL:0000789;2.90e-11;18!CL:0002419;2.90e-11;18!CL:0002087;6.42e-11;104!CL:0000860;1.97e-10;33!CL:0002057;1.97e-10;33!CL:0000766;2.72e-10;69!CL:0000576;3.78e-10;48!CL:0000473;4.55e-10;39!CL:0000234;4.55e-10;39!CL:0000738;3.37e-09;136!CL:0000071;4.43e-09;18!CL:0000763;1.59e-08;100!CL:0000988;2.18e-08;177!CL:0000625;1.68e-07;11!CL:0000945;6.40e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.27e-45,168;CL:0000988,1.08e-44,177;CL:0000738,3.01e-43,136;CL:0002032,1.11e-42,161;CL:0000837,1.11e-42,161;CL:0002087,1.30e-37,115;CL:0002031,2.38e-36,120;CL:0000766,3.42e-23,72;CL:0000763,1.07e-22,108;CL:0000049,1.07e-22,108;CL:0000557,1.20e-19,67;CL:0000838,9.11e-19,52;CL:0000542,9.99e-19,53;CL:0000051,9.99e-19,53;CL:0000839,2.57e-17,66;CL:0002194,9.91e-17,59;CL:0000576,9.91e-17,59;CL:0000040,9.91e-17,59;CL:0000559,9.91e-17,59;CL:0002009,1.12e-16,61;CL:0000473,4.02e-16,48;CL:0000234,4.02e-16,48;CL:0000860,4.59e-15,42;CL:0002057,4.59e-15,42;CL:0000115,1.44e-14,36;CL:0000084,1.06e-11,25;CL:0000827,1.06e-11,25;CL:0002139,1.74e-11,24;CL:0000791,3.35e-11,18;CL:0000789,3.35e-11,18;CL:0002420,3.35e-11,18;CL:0002419,3.35e-11,18;CL:0000790,3.35e-11,18;CL:0000048,4.47e-11,427;CL:0000134,9.13e-11,354;CL:0002320,9.59e-11,361;CL:0000723,1.00e-09,433;CL:0002078,3.37e-09,45;CL:0000034,5.01e-09,441;CL:0000071,5.22e-09,18;CL:0002546,5.22e-09,18;CL:0000625,1.71e-07,11;CL:0000219,2.73e-07,386;CL:0000945,7.37e-07,24;CL:0000826,7.37e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;1.73e-11;53!CL:0002057;2.80e-11;42!CL:0000790;2.90e-11;18!CL:0002546;4.43e-09;18!CL:0000049;2.99e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.33e-27!216;UBERON:0002193!1.02e-26!112;UBERON:0002390!5.11e-23!102;UBERON:0003061!5.11e-23!102;UBERON:0002371!1.23e-15!80;UBERON:0002405!1.44e-15!115;UBERON:0004535!2.52e-14!110;UBERON:0001009!3.03e-14!113;UBERON:0001474!2.15e-13!86;UBERON:0000055!1.66e-11!69;UBERON:0002049!2.63e-10!79;UBERON:0007798!2.63e-10!79;UBERON:0004765!1.55e-09!101;UBERON:0001434!1.55e-09!101;UBERON:0002384!3.65e-09!375;UBERON:0001986!5.58e-09!18;UBERON:0004638!5.58e-09!18;UBERON:0004852!5.58e-09!18;UBERON:0001981!5.66e-09!60;UBERON:0007500!5.66e-09!60;UBERON:0004537!5.66e-09!60;UBERON:0006965!5.66e-09!60;UBERON:0004872!4.64e-08!84;UBERON:0002204!3.08e-07!167;UBERON:0000178!5.00e-07!15;UBERON:0000179!5.00e-07!15;UBERON:0000463!5.00e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.43e-09;18!UBERON:0001986;4.43e-09;18!UBERON:0004852;4.43e-09;18!UBERON:0000178;4.33e-07;15!UBERON:0000179;4.33e-07;15!UBERON:0000463;4.33e-07;15!UBERON:0002193;4.50e-07;42 | |||
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| ||
|short_description=p4@LDB1 | |||
}} | }} |
Latest revision as of 00:06, 16 September 2015
Short description: | p4@LDB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LDB1_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | 134bp_to_ENST00000490751_5end |
EntrezGene: | LDB1 |
HGNC: | 6532 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.67e-31 | 203 |
hemolymphoid system | 2.50e-29 | 108 |
hematopoietic system | 1.61e-25 | 98 |
blood island | 1.61e-25 | 98 |
immune system | 2.71e-23 | 93 |
bone marrow | 7.07e-18 | 76 |
bone element | 2.65e-15 | 82 |
cardiovascular system | 3.01e-14 | 109 |
circulatory system | 3.64e-14 | 112 |
skeletal element | 1.67e-12 | 90 |
vessel | 1.98e-11 | 68 |
mesoderm | 2.31e-10 | 315 |
mesoderm-derived structure | 2.31e-10 | 315 |
presumptive mesoderm | 2.31e-10 | 315 |
skeletal system | 2.41e-10 | 100 |
vasculature | 3.19e-10 | 78 |
vascular system | 3.19e-10 | 78 |
connective tissue | 9.27e-10 | 371 |
blood vessel endothelium | 5.22e-09 | 18 |
endothelium | 5.22e-09 | 18 |
cardiovascular system endothelium | 5.22e-09 | 18 |
epithelial tube open at both ends | 6.89e-09 | 59 |
blood vessel | 6.89e-09 | 59 |
blood vasculature | 6.89e-09 | 59 |
vascular cord | 6.89e-09 | 59 |
splanchnic layer of lateral plate mesoderm | 5.70e-08 | 83 |
musculoskeletal system | 1.08e-07 | 167 |
blood | 4.76e-07 | 15 |
haemolymphatic fluid | 4.76e-07 | 15 |
organism substance | 4.76e-07 | 15 |