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{{UBERON
{{UBERON
|id=UBERON:0009955
|alt_id=
|name=neurogenic placode
|namespace=
|def="Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
|xref=TAO:0001309;;ZFA:0001309
|is_a=UBERON:0002546
|synonym="neurogenic placodes" EXACT PLURAL [ZFA:0001309]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009955
|is_a=UBERON:0002546
|is_obsolete=
|located_in=
|located_in=
|name=neurogenic placode
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="neurogenic placodes" EXACT PLURAL [ZFA:0001309];;"placodae neurogenicae" RELATED LATIN [Wikipedia:Neurogenic_placodes]
|union_of=
|xref=TAO:0001309;;ZFA:0001309
}}
}}

Latest revision as of 18:07, 12 September 2014

Name:neurogenic placode
Namespace:FANTOM
Definition:"Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
Xrefs:
links:

TAO:0001309

ZFA:0001309
Synonyms: "neurogenic placodes" EXACT PLURAL [ZFA:0001309]
"placodae neurogenicae" RELATED LATIN [Wikipedia:Neurogenic_placodes]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002546(cranial placode)



Children

is a:UBERON:0003050 (olfactory placode),UBERON:0003067 (dorsolateral placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009955 (neurogenic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_3a60b0cd6868b4b766bca2e34977f532p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tecta
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_3a60b0cd6868b4b766bca2e34977f532p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_3a60b0cd6868b4b766bca2e34977f532p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_3a60b0cd6868b4b766bca2e34977f532p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_3a60b0cd6868b4b766bca2e34977f532p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_3a60b0cd6868b4b766bca2e34977f532p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_3a60b0cd6868b4b766bca2e34977f532p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_3a60b0cd6868b4b766bca2e34977f532p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_3a60b0cd6868b4b766bca2e34977f532p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_3a60b0cd6868b4b766bca2e34977f532p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_3a60b0cd6868b4b766bca2e34977f532p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_3a60b0cd6868b4b766bca2e34977f532p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_3a60b0cd6868b4b766bca2e34977f532p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_3a60b0cd6868b4b766bca2e34977f532p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_3a60b0cd6868b4b766bca2e34977f532p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_3a60b0cd6868b4b766bca2e34977f532p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tecta
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_3a60b0cd6868b4b766bca2e34977f532p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_3a60b0cd6868b4b766bca2e34977f532p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_3a60b0cd6868b4b766bca2e34977f532p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_3a60b0cd6868b4b766bca2e34977f532p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_3a60b0cd6868b4b766bca2e34977f532p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_3a60b0cd6868b4b766bca2e34977f532p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_3a60b0cd6868b4b766bca2e34977f532p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_3a60b0cd6868b4b766bca2e34977f532p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_3a60b0cd6868b4b766bca2e34977f532p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_3a60b0cd6868b4b766bca2e34977f532p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_3a60b0cd6868b4b766bca2e34977f532p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_3a60b0cd6868b4b766bca2e34977f532p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_3a60b0cd6868b4b766bca2e34977f532p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_3a60b0cd6868b4b766bca2e34977f532p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_3a60b0cd6868b4b766bca2e34977f532p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_3a60b0cd6868b4b766bca2e34977f532p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_3a60b0cd6868b4b766bca2e34977f532p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_3a60b0cd6868b4b766bca2e34977f532p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_3a60b0cd6868b4b766bca2e34977f532p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_3a60b0cd6868b4b766bca2e34977f532p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_3a60b0cd6868b4b766bca2e34977f532p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_3a60b0cd6868b4b766bca2e34977f532p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:89215306..89215315, +

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