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{{UBERON
{{UBERON
|id=UBERON:0008814
|alt_id=
|name=pharyngeal system
|namespace=
|def="A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GO:0060037, GOC:dph]
|xref=EHDAA2:0000187;;ncithesaurus:Pharyngeal_Apparatus
|is_a=UBERON:0002050
|synonym="pharyngeal apparatus" EXACT [];;"pharyngeal arch region" EXACT [EHDAA2:0000187];;"pharyngeal arches and clefts" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GO:0060037, GOC:dph]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008814
|is_a=UBERON:0000477 ;;UBERON:0002050 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=pharyngeal arch system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0009145
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="pharyngeal apparatus" EXACT [];;"pharyngeal arch region" EXACT [EHDAA2:0000187];;"pharyngeal arches and clefts" RELATED []
|union_of=
|xref=EHDAA2:0000187;;ncithesaurus:Pharyngeal_Apparatus
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:pharyngeal arch system
Namespace:FANTOM
Definition:"A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GO:0060037, GOC:dph]
Xrefs:
links:

EHDAA2:0000187

ncithesaurus:Pharyngeal_Apparatus
Synonyms: "pharyngeal apparatus" EXACT []
"pharyngeal arch region" EXACT [EHDAA2:0000187]
"pharyngeal arches and clefts" RELATED []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0002050(embryonic structure),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0000922(embryo),UBERON:0009145(pharyngeal region of foregut)



Children

develops from:UBERON:0001723 (tongue)
part of:UBERON:0002539 (pharyngeal arch),UBERON:0004117 (pharyngeal pouch),UBERON:0007690 (early pharyngeal endoderm),UBERON:0009722 (entire pharyngeal arch endoderm),UBERON:0010046 (entire pharyngeal arch associated mesenchyme)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008814 (pharyngeal arch system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.66e-65FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_e1afcaae9a92c2d9dd9e00ba2e0564b4p4@uc009bpa.1
1.66e-65FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_e1afcaae9a92c2d9dd9e00ba2e0564b4p4@uc009bpa.1
1.86e-64FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_56ec1465fa383f92c69269f83ef68e85p8@uc009bpa.1
1.86e-64FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_56ec1465fa383f92c69269f83ef68e85p8@uc009bpa.1
8.23e-63FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_92275059976a61020b4892869d9d31c3p1@ENSMUST00000103288, p1@uc009bpl.1
8.23e-63FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_92275059976a61020b4892869d9d31c3p1@ENSMUST00000103288, p1@uc009bpl.1
1.32e-61FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_f982758a87f736a40b950982318584ccp@chr6:41491752..41491776, -
1.32e-61FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_f982758a87f736a40b950982318584ccp@chr12:108361918..108361930, -
1.32e-61FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_f982758a87f736a40b950982318584ccp@chr6:41491752..41491776, -
1.32e-61FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_f982758a87f736a40b950982318584ccp@chr12:108361918..108361930, -
2.27e-60FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_2e37b8345ce119d6bdcb31a66da2c828p2@ENSMUST00000103283
2.27e-60FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_2e37b8345ce119d6bdcb31a66da2c828p2@ENSMUST00000103283
2.83e-60FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_6e6bf2969bd27b8f0017676e47e9927ap1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.83e-60FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_6e6bf2969bd27b8f0017676e47e9927ap1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
3.96e-59FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_f3e3b41ef756e788f6f9f9996a63d38dp@chr9:44807434..44807445, -
3.96e-59FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_f3e3b41ef756e788f6f9f9996a63d38dp@chr9:44807434..44807445, -
4.91e-59FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_9a99f00c50bec5c4815474ff52244878p@chr6:41494001..41494028, +
4.91e-59FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_9a99f00c50bec5c4815474ff52244878p@chr6:41494001..41494028, +
1.18e-58FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_62f95e821fed7ff7dc9d81b14f5a3887p@chr9:44809185..44809215, -
1.18e-58FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_62f95e821fed7ff7dc9d81b14f5a3887p@chr9:44809185..44809215, -
1.22e-58FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_df0c3f6792ba749fde20b07c6dd9c556p11@Prkcq
1.22e-58FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_df0c3f6792ba749fde20b07c6dd9c556p11@Prkcq
3.55e-58FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_fe110d798c4ec68a58d22b0471e973bep@chr14:54791784..54791787, +
3.55e-58FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_fe110d798c4ec68a58d22b0471e973bep@chr14:54791784..54791787, +
6.17e-58FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_4d9e8e60c1ca46872441d35f911a9ab0p1@ENSMUST00000103263
6.17e-58FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_4d9e8e60c1ca46872441d35f911a9ab0p1@ENSMUST00000103263
1.17e-57FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_a4dd9b6b33cbc7184a1308c3601b87c3p5@Themis
1.17e-57FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_a4dd9b6b33cbc7184a1308c3601b87c3p5@Themis
1.36e-57FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_dad43663d5c76119c96e0317dd1c1a9cp5@uc009bpa.1
1.36e-57FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_dad43663d5c76119c96e0317dd1c1a9cp5@uc009bpa.1
1.46e-57FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_7ee4dfe786eef2c94044a2cd0fe09d92p@chr9:44793518..44793537, +
1.46e-57FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_7ee4dfe786eef2c94044a2cd0fe09d92p@chr9:44793518..44793537, +
1.87e-57FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_fe868b0d6d6e543cd5362b32177a5398p@chr6:41071548..41071565, +
1.87e-57FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_fe868b0d6d6e543cd5362b32177a5398p@chr6:41071548..41071565, +
3.74e-57FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_86b9b81a6b205df22b8abfb5457b79dep2@uc009bnp.1, p2@uc012eki.1
3.74e-57FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_86b9b81a6b205df22b8abfb5457b79dep2@uc009bnp.1, p2@uc012eki.1
2.11e-56FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_9ec55d231a55de6e783881bc24b09897p5@Tcf7
2.11e-56FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_9ec55d231a55de6e783881bc24b09897p5@Tcf7
7.76e-56FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_5a757e913594f6bdf58c91e3edf28618p@chr14:61328148..61328173, +
7.76e-56FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_5a757e913594f6bdf58c91e3edf28618p@chr14:61328148..61328173, +
1.22e-55FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_00a18f93e11e472402520bd114b62c4dp2@uc009bpa.1
1.22e-55FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_00a18f93e11e472402520bd114b62c4dp2@uc009bpa.1
1.4e-55FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_d99a93d80fbe956a2b4de797c2eb7e06p2@Sh2d1a
1.4e-55FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_d99a93d80fbe956a2b4de797c2eb7e06p2@Sh2d1a
2.37e-55FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_863e71d40fe0185f8c167b9ab9e47c75p1@uc012ekr.1
2.37e-55FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_863e71d40fe0185f8c167b9ab9e47c75p1@uc012ekr.1
2.97e-55FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_f7f896516f0fce6d084909085620c372p2@1810009J06Rik
2.97e-55FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_f7f896516f0fce6d084909085620c372p2@1810009J06Rik
4.31e-55FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_69a54705a17b1a3b7f0cafb084d63a25p1@uc012ekk.1
4.31e-55FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_69a54705a17b1a3b7f0cafb084d63a25p1@uc012ekk.1
5.01e-55FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_5ad18334b313c977acd2794abb2ba728p1@ENSMUST00000103265
5.01e-55FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_5ad18334b313c977acd2794abb2ba728p3@uc009bpo.1, p3@uc009bpp.1
5.01e-55FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_5ad18334b313c977acd2794abb2ba728p3@uc009bpo.1, p3@uc009bpp.1
5.01e-55FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_5ad18334b313c977acd2794abb2ba728p1@ENSMUST00000103265
1.07e-54FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_593eab50eead7ea779f8970df6429116p@chr7:133512043..133512060, -
1.07e-54FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_593eab50eead7ea779f8970df6429116p@chr7:133512043..133512060, -
1.32e-54FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_13f2eb2c586e0fe4112394f05fe958a7p2@Gm5409
1.32e-54FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_13f2eb2c586e0fe4112394f05fe958a7p2@Gm5409
2.0e-54FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_815b0dd9ac405dbdff1f18064302cd20p5@Trat1
2.0e-54FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_815b0dd9ac405dbdff1f18064302cd20p5@Trat1
2.2e-54FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_30f09a6a98e25ee4f33a8e38b01a403cp4@Trat1
2.2e-54FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_30f09a6a98e25ee4f33a8e38b01a403cp4@Trat1
2.23e-54FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_0a28bdf60a95ae57d50c6797dc411ea3p@chr6:41489240..41489252, +
2.23e-54FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_0a28bdf60a95ae57d50c6797dc411ea3p@chr6:41489240..41489252, +
4.16e-54FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_a947a7189afd1402f18661e524b1c930p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
4.16e-54FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_a947a7189afd1402f18661e524b1c930p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
4.37e-54FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_99c5adad98b7b3704137df8a8167f4e0p@chr6:41494376..41494389, -
4.37e-54FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_99c5adad98b7b3704137df8a8167f4e0p1@ENSMUST00000103282
4.37e-54FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_99c5adad98b7b3704137df8a8167f4e0p@chr6:41494376..41494389, -
4.37e-54FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_99c5adad98b7b3704137df8a8167f4e0p1@ENSMUST00000103282
5.42e-54FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_6f54964715b9e12793c287c0630548fcp1@ENSMUST00000103298, p1@uc009bpy.1
5.42e-54FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_6f54964715b9e12793c287c0630548fcp1@ENSMUST00000103298, p1@uc009bpy.1
5.43e-54FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_2e5a27d8d6777b85d3dd20689a07eb0bp@chr14:54794540..54794554, +
5.43e-54FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_2e5a27d8d6777b85d3dd20689a07eb0bp@chr14:54794540..54794554, +
5.9e-54FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_ebea1042e303702f7bd804b76db12406p@chr6:41491801..41491815, -
5.9e-54FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_ebea1042e303702f7bd804b76db12406p@chr6:41491801..41491815, -
5.9e-54FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_ebea1042e303702f7bd804b76db12406p@chr14:54496363..54496388, +
5.9e-54FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_ebea1042e303702f7bd804b76db12406p@chr14:54496363..54496388, +
6.18e-54FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_af503fca074db968db9dd64274eb434ep@chr6:41492643..41492662, +
6.18e-54FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_af503fca074db968db9dd64274eb434ep@chr6:41492643..41492662, +
6.96e-54FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_99a06687be877068c4b6e8f15f565efep1@Il13
6.96e-54FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_99a06687be877068c4b6e8f15f565efep1@Il13
7.53e-54FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_985568474858bd9e4c25a13f63863d60p@chr6:41492605..41492621, +
7.53e-54FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_985568474858bd9e4c25a13f63863d60p@chr6:41492605..41492621, +
7.54e-54FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_e5c49ad77d00e53ef2abd420b4cc53c8p7@Lat
7.54e-54FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_e5c49ad77d00e53ef2abd420b4cc53c8p7@Lat
8.18e-54FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_340f25a26c0a746418e1187885c93c76p@chr6:41138311..41138333, +
8.18e-54FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_340f25a26c0a746418e1187885c93c76p@chr6:41138311..41138333, +
1.05e-53FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_8b64a711f87737cf74421aa6706ee906p5@uc009bnp.1, p5@uc012eki.1
1.05e-53FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_8b64a711f87737cf74421aa6706ee906p5@uc009bnp.1, p5@uc012eki.1
1.16e-53FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_0d0f74a4daa5999eb1598a86f042bd47p8@Lat
1.16e-53FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_0d0f74a4daa5999eb1598a86f042bd47p6@uc009bpa.1
1.16e-53FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_0d0f74a4daa5999eb1598a86f042bd47p6@uc009bpa.1
1.16e-53FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_0d0f74a4daa5999eb1598a86f042bd47p@chr4:125978325..125978339, -
1.16e-53FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_0d0f74a4daa5999eb1598a86f042bd47p8@Lat
1.16e-53FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_0d0f74a4daa5999eb1598a86f042bd47p@chr4:125978325..125978339, -
1.01e-52FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_df7c5a7741bae7cb4175cedb92989c12p2@Cd6
1.01e-52FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_df7c5a7741bae7cb4175cedb92989c12p2@Cd6
1.09e-52FFCP PHASE2:Mm9::chr11:52075039..52075066,+#_5c11e5f17926f7bc242853c1fd6b151bp@chr11:52075039..52075066, +
1.09e-52FFCP PHASE1:Mm9::chr11:52075039..52075066,+#_5c11e5f17926f7bc242853c1fd6b151bp@chr11:52075039..52075066, +

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