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{{UBERON
{{UBERON
|id=UBERON:0007026
|alt_id=
|name=primitive gut
|namespace=
|def=
|xref=BILA:0000084
|is_a=UBERON:0002050;;UBERON:0004119
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000925
|develops_from=UBERON:0000925
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007026
|is_a=UBERON:0002050
|is_obsolete=
|located_in=
|located_in=
|name=primitive gut
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=BILA:0000084;;ncithesaurus:Primordial_Gut
}}
}}

Latest revision as of 18:00, 12 September 2014

Name:primitive gut
Namespace:FANTOM
Xrefs:
links:

BILA:0000084

ncithesaurus:Primordial_Gut

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002050(embryonic structure)
develops_from:UBERON:0000925(endoderm)



Children

develops from:UBERON:0000065 (respiratory tract),UBERON:0001555 (digestive tract)
part of:UBERON:0000930 (stomodeum),UBERON:0000931 (proctodeum),UBERON:0003921 (pancreas primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007026 (primitive gut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.99e-36FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_7940b235b48b454a043eabb3dc9ea239p1@FOXA1
4.99e-36FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_7940b235b48b454a043eabb3dc9ea239p1@FOXA1
1.61e-35FFCP PHASE2:Hg19::chr5:134369879..134369898,-#_b92abb05be197486afdb61252adf33d5p2@PITX1
1.61e-35FFCP PHASE1:Hg19::chr5:134369879..134369898,-#_b92abb05be197486afdb61252adf33d5p2@PITX1
1.29e-32FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_18ce2f70ec49c84d105ea6c4ceb34700p1@ESRP2
1.29e-32FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_18ce2f70ec49c84d105ea6c4ceb34700p1@ESRP2
4.79e-32FFCP PHASE1:Hg19::chr16:86542652..86542692,-#_7d3d1e2206b5f67f84fd0076cb46ded5p2@LOC400550
4.79e-32FFCP PHASE2:Hg19::chr16:86542652..86542692,-#_7d3d1e2206b5f67f84fd0076cb46ded5p2@LOC400550
9.87e-31FFCP PHASE1:Hg19::chr16:86532148..86532166,-#_ea38e7df525d3b09fd28098d6bc944d5p@chr16:86532148..86532166, -
9.87e-31FFCP PHASE2:Hg19::chr16:86532148..86532166,-#_ea38e7df525d3b09fd28098d6bc944d5p@chr16:86532148..86532166, -
1.01e-30FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_adf989bca7da73c5eb93ec66c3345909p1@MYO5B
1.01e-30FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_adf989bca7da73c5eb93ec66c3345909p1@MYO5B
1.18e-30FFCP PHASE2:Hg19::chr14:65409452..65409479,-#_185ca983cf4ebfd4e2b618cb450dc731p1@GPX2
1.18e-30FFCP PHASE1:Hg19::chr14:65409452..65409479,-#_185ca983cf4ebfd4e2b618cb450dc731p1@GPX2
5.14e-30FFCP PHASE1:Mm9::chr12:58646974..58647003,-#_95d99d1b327561581932e1e4f8e66cf2p1@Foxa1
5.14e-30FFCP PHASE2:Mm9::chr12:58646974..58647003,-#_95d99d1b327561581932e1e4f8e66cf2p1@Foxa1
5.76e-30FFCP PHASE1:Mm9::chr13:4190454..4190472,+#_9a323d49b10d277f4e253452e050286ap2@Akr1c13
5.76e-30FFCP PHASE2:Mm9::chr13:4190454..4190472,+#_9a323d49b10d277f4e253452e050286ap2@Akr1c13
1.52e-29FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_2a399578712c948f0f16f06b33b2a401p1@PTK6
1.52e-29FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_2a399578712c948f0f16f06b33b2a401p1@PTK6
4.1e-29FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_7668a7711b10ea89d34825a1657cb4bfp@chr16:68260798..68260800, -
4.1e-29FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_7668a7711b10ea89d34825a1657cb4bfp@chr16:68260798..68260800, -
6.23e-29FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_9b3f7c93562a8ff2aa3d89e50c1c64c1p1@ELF3
6.23e-29FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_9b3f7c93562a8ff2aa3d89e50c1c64c1p1@ELF3
7.64e-29FFCP PHASE1:Mm9::chr2:180976725..180976753,-#_c02c4e9752f2687758613990d54209fep2@BC006779
7.64e-29FFCP PHASE2:Mm9::chr2:180976725..180976753,-#_c02c4e9752f2687758613990d54209fep2@BC006779
1.66e-28FFCP PHASE1:Hg19::chr19:42212526..42212575,+#_3031cc81dfc66406b8cb8b5d2c7bf9a0p1@CEACAM5
1.66e-28FFCP PHASE2:Hg19::chr19:42212526..42212575,+#_3031cc81dfc66406b8cb8b5d2c7bf9a0p1@CEACAM5
2.87e-28FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_1f8db2ecb839b2a916ba5b356c4fa8b4p3@CLDN7
2.87e-28FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_1f8db2ecb839b2a916ba5b356c4fa8b4p3@CLDN7
7.57e-28FFCP PHASE1:Mm9::chr8:70018742..70018782,+#_19a5c2bb8a993862a1daebdcd373b20dp1@Nat2
7.57e-28FFCP PHASE2:Mm9::chr8:70018742..70018782,+#_19a5c2bb8a993862a1daebdcd373b20dp1@Nat2
1.1e-27FFCP PHASE1:Hg19::chr5:134369905..134369972,-#_e1a20096213a8ba66865c8b6d62d643cp1@PITX1
1.1e-27FFCP PHASE2:Hg19::chr5:134369905..134369972,-#_e1a20096213a8ba66865c8b6d62d643cp1@PITX1
1.82e-27FFCP PHASE2:Mm9::chr5:65194752..65194769,+#_472d1c0f27ef2505e1033e90861f95d3p1@Klf3
1.82e-27FFCP PHASE1:Mm9::chr5:65194752..65194769,+#_472d1c0f27ef2505e1033e90861f95d3p1@Klf3
3.7e-27FFCP PHASE1:Mm9::chr2:51828449..51828501,-#_abfd0e6ed2791c4db96027e12652fddap1@Nmi
3.7e-27FFCP PHASE2:Mm9::chr2:51828449..51828501,-#_abfd0e6ed2791c4db96027e12652fddap1@Nmi
3.88e-27FFCP PHASE1:Hg19::chr6:1312325..1312340,+#_49104bbd500bade648448997de3243dfp1@FOXQ1
3.88e-27FFCP PHASE2:Hg19::chr6:1312325..1312340,+#_49104bbd500bade648448997de3243dfp1@FOXQ1
5.02e-27FFCP PHASE2:Hg19::chr1:26503974..26504025,+#_4775d9105a71bed69532e3c1ec374148p1@CNKSR1
5.02e-27FFCP PHASE1:Hg19::chr1:26503974..26504025,+#_4775d9105a71bed69532e3c1ec374148p1@CNKSR1
5.37e-27FFCP PHASE1:Mm9::chr1:37722539..37722560,-#_805b273f9f04d9417cbf9147709d7114p@chr1:37722539..37722560, -
5.37e-27FFCP PHASE2:Mm9::chr1:37722539..37722560,-#_805b273f9f04d9417cbf9147709d7114p@chr1:37722539..37722560, -
5.43e-27FFCP PHASE2:Hg19::chr11:394196..394258,+#_657e5507bb7bbd5a13944a339310b9aep1@PKP3
5.43e-27FFCP PHASE1:Hg19::chr11:394196..394258,+#_657e5507bb7bbd5a13944a339310b9aep1@PKP3
6.53e-27FFCP PHASE2:Mm9::chr13:4278636..4278655,-#_d5cce1b590379085eb3c47987e041a6bp1@Akr1c12
6.53e-27FFCP PHASE1:Mm9::chr13:4278636..4278655,-#_d5cce1b590379085eb3c47987e041a6bp1@Akr1c12
1.11e-26FFCP PHASE2:Mm9::chr1:58852306..58852403,+#_f4ff1cfcda0158861df815d5ecb18b95p2@Casp8
1.11e-26FFCP PHASE1:Mm9::chr1:58852306..58852403,+#_f4ff1cfcda0158861df815d5ecb18b95p2@Casp8
2.45e-26FFCP PHASE2:Mm9::chr6:7795251..7795299,+#_905b2cbe7a6022d99ff7e670c66cd69ap1@C1galt1
2.45e-26FFCP PHASE1:Mm9::chr6:7795251..7795299,+#_905b2cbe7a6022d99ff7e670c66cd69ap1@C1galt1
2.56e-26FFCP PHASE1:Hg19::chr14:65409484..65409495,-#_bc4a316b0ecd9ae1fc2b3bdd865d4d13p2@GPX2
2.56e-26FFCP PHASE2:Hg19::chr14:65409484..65409495,-#_bc4a316b0ecd9ae1fc2b3bdd865d4d13p2@GPX2
2.62e-26FFCP PHASE1:Hg19::chr6:116381918..116381977,-#_768951ed03feee25c8b49fa3ea6f3e09p1@FRK
2.62e-26FFCP PHASE2:Hg19::chr6:116381918..116381977,-#_768951ed03feee25c8b49fa3ea6f3e09p1@FRK
2.79e-26FFCP PHASE2:Hg19::chr11:32851450..32851485,+#_f41f22f3605a7b0650f6006b8f44148ap1@PRRG4
2.79e-26FFCP PHASE1:Hg19::chr11:32851450..32851485,+#_f41f22f3605a7b0650f6006b8f44148ap1@PRRG4
3.02e-26FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_fbec5f4d75dac713bd9e88ee61281e2dp2@CHMP4C
3.02e-26FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_fbec5f4d75dac713bd9e88ee61281e2dp2@CHMP4C
3.55e-26FFCP PHASE2:Hg19::chr1:209825762..209825779,-#_cbbd36cc21655e66bcd6465c289136c8p1@LAMB3
3.55e-26FFCP PHASE1:Hg19::chr1:209825762..209825779,-#_cbbd36cc21655e66bcd6465c289136c8p1@LAMB3
4.15e-26FFCP PHASE2:Mm9::chr18:38369387..38369401,-#_72b5787f4631e19ded0cb4023a3b15cep4@Pcdh1
4.15e-26FFCP PHASE1:Mm9::chr18:38369387..38369401,-#_72b5787f4631e19ded0cb4023a3b15cep4@Pcdh1
4.54e-26FFCP PHASE2:Hg19::chr13:76334824..76334862,+#_adc24d8177350c92a76728c2e274286ep2@LMO7
4.54e-26FFCP PHASE1:Hg19::chr13:76334824..76334862,+#_adc24d8177350c92a76728c2e274286ep2@LMO7
4.87e-26FFCP PHASE2:Mm9::chr11:106781922..106781957,-#_c77e94aa4f3436e40f09da0699789786p4@Smurf2
4.87e-26FFCP PHASE1:Mm9::chr11:106781922..106781957,-#_c77e94aa4f3436e40f09da0699789786p4@Smurf2
4.9e-26FFCP PHASE2:Mm9::chr1:58852462..58852483,+#_a29bdff3088278642e73f7b84a374af5p4@Casp8
4.9e-26FFCP PHASE1:Mm9::chr1:58852462..58852483,+#_a29bdff3088278642e73f7b84a374af5p4@Casp8
5.37e-26FFCP PHASE1:Hg19::chr3:142315294..142315315,+#_fa03c80b72cb0594a70d606c77653a24p3@PLS1
5.37e-26FFCP PHASE2:Hg19::chr3:142315294..142315315,+#_fa03c80b72cb0594a70d606c77653a24p3@PLS1
5.52e-26FFCP PHASE1:Mm9::chr4:124428852..124428893,+#_a3087dd69f4ae9063a2834e62bfb9d1ap1@Inpp5b
5.52e-26FFCP PHASE2:Mm9::chr4:124428852..124428893,+#_a3087dd69f4ae9063a2834e62bfb9d1ap1@Inpp5b
5.79e-26FFCP PHASE2:Mm9::chr13:101322621..101322632,-#_56d0850b586aa75719f81482035de77dp4@Ocln
5.79e-26FFCP PHASE1:Mm9::chr13:101322621..101322632,-#_56d0850b586aa75719f81482035de77dp4@Ocln
6.23e-26FFCP PHASE1:Hg19::chr19:3708338..3708374,+#_59e5f90a1c767915874150dcac7cebd0p2@TJP3
6.23e-26FFCP PHASE2:Hg19::chr19:3708338..3708374,+#_59e5f90a1c767915874150dcac7cebd0p2@TJP3
6.37e-26FFCP PHASE2:Mm9::chr10:128180925..128180966,-#_4a4422d1cad5fb8ed23f1750727f0593p2@Dgka
6.37e-26FFCP PHASE1:Mm9::chr10:128180925..128180966,-#_4a4422d1cad5fb8ed23f1750727f0593p2@Dgka
7.63e-26FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_d7bcd2e1f49bfcc2d57a9c1baa7a6b23p2@ALDH3A1
7.63e-26FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_d7bcd2e1f49bfcc2d57a9c1baa7a6b23p2@ALDH3A1
8.05e-26FFCP PHASE1:Mm9::chr9:110782790..110782819,+#_174bf36ce63b9f12bdab1b43aa429086p1@Als2cl
8.05e-26FFCP PHASE2:Mm9::chr9:110782790..110782819,+#_174bf36ce63b9f12bdab1b43aa429086p1@Als2cl
8.42e-26FFCP PHASE2:Mm9::chr11:116072277..116072320,+#_551637baa2d88691a6a15c58841825f1p2@2310004N24Rik
8.42e-26FFCP PHASE1:Mm9::chr11:116072277..116072320,+#_551637baa2d88691a6a15c58841825f1p2@2310004N24Rik
9.38e-26FFCP PHASE2:Hg19::chr7:1595831..1595858,-#_b8b978d53c21f7842ef2919cbf473b7ep1@TMEM184A
9.38e-26FFCP PHASE1:Hg19::chr7:1595831..1595858,-#_b8b978d53c21f7842ef2919cbf473b7ep1@TMEM184A
1.03e-25FFCP PHASE1:Hg19::chr10:101690650..101690683,-#_d27a68484c477f2b31be9c4bf478c365p2@DNMBP
1.03e-25FFCP PHASE2:Hg19::chr10:101690650..101690683,-#_d27a68484c477f2b31be9c4bf478c365p2@DNMBP
1.14e-25FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_ba1e0ddd1739bdede33c2ea8d428aea2p2@ELF3
1.14e-25FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_ba1e0ddd1739bdede33c2ea8d428aea2p2@ELF3
1.37e-25FFCP PHASE1:Hg19::chr10:114133905..114133922,+#_88534b5a8815c20e031cf35f183e5985p2@ACSL5
1.37e-25FFCP PHASE2:Hg19::chr10:114133905..114133922,+#_88534b5a8815c20e031cf35f183e5985p2@ACSL5
1.44e-25FFCP PHASE2:Hg19::chr18:61144160..61144214,+#_10ded415a16f78dd72ec3647f213a53ep1@SERPINB5
1.44e-25FFCP PHASE1:Hg19::chr18:61144160..61144214,+#_10ded415a16f78dd72ec3647f213a53ep1@SERPINB5
1.48e-25FFCP PHASE2:Mm9::chr6:117867010..117867024,+#_6cea206a5961cfbb998905d0613768abp3@Hnrnpf
1.48e-25FFCP PHASE1:Mm9::chr6:117867010..117867024,+#_6cea206a5961cfbb998905d0613768abp3@Hnrnpf
1.51e-25FFCP PHASE1:Hg19::chr3:111451321..111451372,+#_4e2f3598f69b7834da440f5962f10433p3@PHLDB2
1.51e-25FFCP PHASE2:Hg19::chr3:111451321..111451372,+#_4e2f3598f69b7834da440f5962f10433p3@PHLDB2

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