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{{UBERON
{{UBERON
|id=UBERON:0007005
|alt_id=
|name=cardiac mesoderm
|namespace=
|def="the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." [http://www.drugs.com/dict/cardiogenic-mesoderm.html, XAO:0000235]
|xref=AAO:0011021;;BILA:0000051;;EHDAA:385;;SCTID:360387000;;VHOG:0001641;;XAO:0000235
|is_a=UBERON:0000479;;UBERON:0004120;;UBERON:0005291
|synonym="cardiogenic mesoderm" RELATED [http://www.drugs.com/dict/cardiogenic-mesoderm.html];;"heart primordia" RELATED [XAO:0000235]
|comment=consider FBbt:00005541
|comment=consider FBbt:00005541
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." [http://www.drugs.com/dict/cardiogenic-mesoderm.html, XAO:0000235]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0004872
|develops_from=UBERON:0004872
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007005
|is_a=UBERON:0004120 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|name=cardiac mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004140;;UBERON:0009881
|part_of=UBERON:0004140;;UBERON:0009881
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="cardiogenic mesoderm" RELATED [http://www.drugs.com/dict/cardiogenic-mesoderm.html];;"heart primordia" RELATED [XAO:0000235]
|union_of=
|xref=AAO:0011021;;BILA:0000051;;EHDAA:385;;SCTID:360387000;;VHOG:0001641;;XAO:0000235
}}
}}

Latest revision as of 17:59, 12 September 2014

Name:cardiac mesoderm
Namespace:FANTOM
Definition:"the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." XAO:0000235
Xrefs:
links:

AAO:0011021
BILA:0000051
EHDAA:385
SCTID:360387000
VHOG:0001641

XAO:0000235
Synonyms: "cardiogenic mesoderm" RELATED [1]
"heart primordia" RELATED [XAO:0000235]
Comments:consider FBbt:00005541

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue)
develops_from:UBERON:0004872(splanchnic layer of lateral plate mesoderm)
part_of:UBERON:0004140(primary heart field),UBERON:0009881(anterior lateral plate mesoderm)



Children

develops from:UBERON:0003084 (heart primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007005 (cardiac mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.09e-81FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_347feb3c69b1a3d9f1fdfe2b2a020e32p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_347feb3c69b1a3d9f1fdfe2b2a020e32p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_347feb3c69b1a3d9f1fdfe2b2a020e32p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_347feb3c69b1a3d9f1fdfe2b2a020e32p@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_347feb3c69b1a3d9f1fdfe2b2a020e32p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_347feb3c69b1a3d9f1fdfe2b2a020e32p@chr9:24549775..24549776, -
1.88e-78FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_3a5b778698262611bcc614f4164a8a85p@chr4:140980456..140980463, +
1.88e-78FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_3a5b778698262611bcc614f4164a8a85p@chr4:140980456..140980463, +
1.92e-77FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_293a06960aba69ec5e07384401a01794p@chr1:137737483..137737497, -
1.92e-77FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_293a06960aba69ec5e07384401a01794p@chr12:113728951..113728965, +
1.92e-77FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_293a06960aba69ec5e07384401a01794p@chr12:113728951..113728965, +
1.92e-77FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_293a06960aba69ec5e07384401a01794p@chr1:137737483..137737497, -
2.14e-77FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_59b4fe2e5cbe883fe09fbeb9ba2be6cap@chr19:36187511..36187515, -
2.14e-77FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_59b4fe2e5cbe883fe09fbeb9ba2be6cap@chr4:147375200..147375220, +
2.14e-77FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_59b4fe2e5cbe883fe09fbeb9ba2be6cap@chr19:36187511..36187515, -
2.14e-77FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_59b4fe2e5cbe883fe09fbeb9ba2be6cap@chr4:147375200..147375220, +
8.14e-77FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_2b851ade18a3aae8ebb23fc64ec4f445p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_2b851ade18a3aae8ebb23fc64ec4f445p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_2b851ade18a3aae8ebb23fc64ec4f445p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_2b851ade18a3aae8ebb23fc64ec4f445p@chr4:147375901..147375913, +
1.2e-73FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_cdcf68eeffd62fef6ce03dbcc9cd3831p@chr1:137742152..137742184, -
1.2e-73FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_cdcf68eeffd62fef6ce03dbcc9cd3831p@chr1:137742152..137742184, -
1.46e-72FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_0d6fbabfaf067f498df019460e879cc8p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_0d6fbabfaf067f498df019460e879cc8p@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_0d6fbabfaf067f498df019460e879cc8p2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_0d6fbabfaf067f498df019460e879cc8p2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_0d6fbabfaf067f498df019460e879cc8p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_0d6fbabfaf067f498df019460e879cc8p@chr1:137742470..137742481, +
1.46e-72FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_0d6fbabfaf067f498df019460e879cc8p@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_0d6fbabfaf067f498df019460e879cc8p@chr1:137742470..137742481, +
1.63e-72FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_629b260a31dceed2c2360b15df7e93f8p1@ENSMUST00000154140
1.63e-72FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_629b260a31dceed2c2360b15df7e93f8p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_629b260a31dceed2c2360b15df7e93f8p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_629b260a31dceed2c2360b15df7e93f8p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_629b260a31dceed2c2360b15df7e93f8p5@Nebl
1.63e-72FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_629b260a31dceed2c2360b15df7e93f8p11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_629b260a31dceed2c2360b15df7e93f8p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_629b260a31dceed2c2360b15df7e93f8p5@Nebl
1.63e-72FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_629b260a31dceed2c2360b15df7e93f8p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_629b260a31dceed2c2360b15df7e93f8p11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_629b260a31dceed2c2360b15df7e93f8p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_629b260a31dceed2c2360b15df7e93f8p1@ENSMUST00000154140
1.82e-72FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_b8a1497d7d34d09934fa709b80229c7bp@chr9:24529233..24529237, -
1.82e-72FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_b8a1497d7d34d09934fa709b80229c7bp@chr9:24529233..24529237, -
2.03e-72FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_603ad33f08f1e203a5fd69ba7a06db13p6@Usp20
2.03e-72FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_603ad33f08f1e203a5fd69ba7a06db13p6@Usp20

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